Wall clock time and date at job start Tue Mar 31 2020 20:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47301 * 269.79502 * 3 2 1 5 5 C 1.36938 * 119.99841 * 273.01675 * 4 3 2 6 6 H 1.07994 * 119.99790 * 187.47540 * 5 4 3 7 7 C 1.38810 * 119.99701 * 7.48369 * 5 4 3 8 8 N 1.31611 * 120.00580 * 27.06920 * 7 5 4 9 9 Si 1.86801 * 119.99478 * 207.06232 * 7 5 4 10 10 H 1.48506 * 109.47147 * 90.00306 * 9 7 5 11 11 H 1.48503 * 109.46913 * 210.00076 * 9 7 5 12 12 H 1.48496 * 109.47332 * 329.99973 * 9 7 5 13 13 S 1.65596 * 119.99834 * 93.01867 * 4 3 2 14 14 O 1.42095 * 106.40623 * 336.46092 * 13 4 3 15 15 O 1.42104 * 106.39869 * 203.53729 * 13 4 3 16 16 C 1.76206 * 107.21949 * 90.00151 * 13 4 3 17 17 C 1.38729 * 120.01066 * 89.99693 * 16 13 4 18 18 C 1.37171 * 120.60773 * 179.97438 * 17 16 13 19 19 C 1.41108 * 120.43772 * 0.27591 * 18 17 16 20 20 N 1.34811 * 128.76489 * 180.39190 * 19 18 17 21 21 C 1.28685 * 117.92782 * 179.60210 * 20 19 18 22 22 O 1.35322 * 124.80938 * 179.71616 * 21 20 19 23 23 S 1.75810 * 110.38203 * 359.72255 * 21 20 19 24 24 C 1.39785 * 118.36650 * 359.45961 * 19 18 17 25 25 C 1.37683 * 120.01193 * 269.97579 * 16 13 4 26 26 H 4.40642 * 5.51464 * 179.97438 * 4 1 2 27 27 H 1.09009 * 109.47209 * 149.79474 * 3 2 1 28 28 H 1.09006 * 109.47516 * 29.79700 * 3 2 1 29 29 H 0.97005 * 120.00097 * 180.02562 * 8 7 5 30 30 H 1.08002 * 119.69661 * 359.95612 * 17 16 13 31 31 H 1.08000 * 119.78911 * 180.02562 * 18 17 16 32 32 H 0.96701 * 114.00118 * 0.02562 * 22 21 20 33 33 H 1.08001 * 119.90156 * 0.04361 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1343 0.0058 1.3812 5 6 3.3032 1.1926 2.0433 6 1 3.7752 1.2066 3.0145 7 6 2.8674 2.3774 1.4661 8 7 1.8694 2.3635 0.6082 9 14 3.6974 3.9917 1.9072 10 1 4.8241 4.2406 0.9723 11 1 2.7134 5.0990 1.8025 12 1 4.2145 3.9188 3.2973 13 16 3.4821 -1.4235 2.1417 14 8 2.7244 -2.4259 1.4783 15 8 3.3834 -1.1701 3.5365 16 6 5.1763 -1.7863 1.8207 17 6 6.1601 -1.3257 2.6836 18 6 7.4826 -1.6014 2.4457 19 6 7.8637 -2.3542 1.3147 20 7 9.0997 -2.7261 0.9256 21 6 9.2084 -3.4251 -0.1494 22 8 10.3773 -3.8671 -0.6685 23 16 7.6231 -3.7242 -0.8481 24 6 6.8620 -2.8171 0.4566 25 6 5.5241 -2.5275 0.7137 26 1 -1.0501 0.0002 0.0000 27 1 3.0089 0.8890 -0.5171 28 1 3.0097 -0.8910 -0.5107 29 1 1.5651 3.1914 0.2046 30 1 5.8822 -0.7444 3.5503 31 1 8.2376 -1.2366 3.1264 32 1 11.1567 -3.6121 -0.1561 33 1 4.7572 -2.8851 0.0427 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001655087679.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:13 Heat of formation + Delta-G solvation = 30.688917 kcal Electronic energy + Delta-G solvation = -24139.734905 eV Core-core repulsion = 20387.588260 eV Total energy + Delta-G solvation = -3752.146645 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.023 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -40.45664 -38.59902 -36.38757 -36.21966 -35.97948 -34.88421 -31.86234 -31.10296 -31.06807 -29.55157 -26.53512 -24.93668 -23.87389 -23.09468 -22.23637 -19.17008 -18.72175 -18.37930 -18.00065 -17.55038 -16.60635 -16.30339 -15.79892 -15.71723 -15.03143 -14.82444 -14.55540 -14.29037 -13.83392 -13.58034 -13.48668 -13.37548 -13.01187 -12.54591 -12.50303 -11.78475 -11.41387 -11.37850 -11.19675 -11.01235 -10.98819 -10.94239 -10.52654 -10.46008 -10.24513 -10.23252 -10.08357 -9.65807 -9.15774 -8.77954 -8.60663 -8.26143 -8.21863 -6.38737 -3.88415 0.18441 0.50340 1.15707 1.24836 1.42769 2.06282 3.16057 3.21895 3.24650 3.26209 3.47704 3.82096 4.13432 4.21145 4.29196 4.46168 4.61630 4.64489 4.95625 5.03721 5.28076 5.29500 5.53881 5.63690 5.71868 5.88923 6.04790 6.08812 6.28626 6.54385 6.67570 6.76226 6.96104 7.22987 7.31430 7.44354 8.23553 8.77277 9.02169 9.14393 10.57427 Molecular weight = 338.02amu Principal moments of inertia in cm(-1) A = 0.014671 B = 0.004074 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.004660 B = 6871.062035 C = 7442.293795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.098 4.098 3 C 0.249 3.751 4 N -0.827 5.827 5 C -0.318 4.318 6 H 0.115 0.885 7 C 0.049 3.951 8 N -0.834 5.834 9 Si 0.901 3.099 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.268 1.268 13 S 2.634 3.366 14 O -0.974 6.974 15 O -0.960 6.960 16 C -0.659 4.659 17 C -0.004 4.004 18 C -0.099 4.099 19 C 0.146 3.854 20 N -0.540 5.540 21 C 0.307 3.693 22 O -0.429 6.429 23 S 0.130 5.870 24 C -0.217 4.217 25 C 0.036 3.964 26 H 0.198 0.802 27 H 0.103 0.897 28 H 0.062 0.938 29 H 0.270 0.730 30 H 0.152 0.848 31 H 0.139 0.861 32 H 0.414 0.586 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.620 -7.494 -3.517 14.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.101 4.101 3 C 0.123 3.877 4 N -0.657 5.657 5 C -0.452 4.452 6 H 0.133 0.867 7 C -0.160 4.160 8 N -0.471 5.471 9 Si 0.727 3.273 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.192 1.192 13 S 2.723 3.277 14 O -0.964 6.964 15 O -0.949 6.949 16 C -0.740 4.740 17 C -0.026 4.026 18 C -0.121 4.121 19 C 0.027 3.973 20 N -0.274 5.274 21 C -0.015 4.015 22 O -0.228 6.228 23 S 0.378 5.622 24 C -0.335 4.335 25 C 0.013 3.987 26 H 0.215 0.785 27 H 0.121 0.879 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.169 0.831 31 H 0.157 0.843 32 H 0.271 0.729 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.030 -8.755 -4.286 14.720 hybrid contribution 1.402 1.817 0.865 2.453 sum 12.433 -6.938 -3.421 14.643 Atomic orbital electron populations 1.24170 0.95292 1.07123 1.01614 1.22800 0.94027 0.94741 0.98494 1.17802 0.85049 1.01013 0.83809 1.53497 1.69025 1.21395 1.21771 1.19352 1.40470 0.83086 1.02273 0.86701 1.25081 0.95030 0.98940 0.96963 1.70223 1.19426 1.28373 1.29090 0.86350 0.79617 0.81985 0.79383 1.20322 1.21044 1.19203 1.05115 0.75145 0.73039 0.74398 1.93488 1.68726 1.57987 1.76168 1.93469 1.86228 1.84920 1.30321 1.32439 1.29937 1.08775 1.02869 1.20729 0.90931 0.93775 0.97151 1.20700 0.96667 0.99234 0.95479 1.18689 0.84607 0.97792 0.96170 1.66625 1.25901 1.19264 1.15606 1.25255 0.92285 0.93108 0.90898 1.85105 1.13869 1.72530 1.51255 1.85037 0.94844 1.56305 1.26051 1.23617 0.99628 1.09279 1.00996 1.20072 0.92560 0.91649 0.94465 0.78510 0.87878 0.91996 0.91857 0.83083 0.84347 0.72870 0.83779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 55. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.72 19.25 29.55 0.57 -5.15 16 2 C -0.10 -2.28 11.20 -37.13 -0.42 -2.69 16 3 C 0.25 5.42 5.10 -6.83 -0.03 5.39 16 4 N -0.83 -18.88 2.88 -62.77 -0.18 -19.06 16 5 C -0.32 -7.69 9.36 -15.06 -0.14 -7.83 16 6 H 0.12 2.72 7.43 -52.49 -0.39 2.33 16 7 C 0.05 1.18 4.86 -17.43 -0.08 1.09 16 8 N -0.83 -20.62 9.10 55.49 0.50 -20.11 16 9 Si 0.90 18.72 29.63 -169.99 -5.04 13.69 16 10 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 11 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 13 S 2.63 56.11 5.60 -107.50 -0.60 55.50 16 14 O -0.97 -21.84 16.28 -57.17 -0.93 -22.77 16 15 O -0.96 -22.50 16.16 -57.17 -0.92 -23.43 16 16 C -0.66 -11.84 5.97 -39.60 -0.24 -12.07 16 17 C 0.00 -0.07 9.47 -39.79 -0.38 -0.44 16 18 C -0.10 -1.49 10.10 -38.88 -0.39 -1.88 16 19 C 0.15 2.27 6.94 -84.89 -0.59 1.68 16 20 N -0.54 -7.54 10.60 -11.85 -0.13 -7.67 16 21 C 0.31 3.69 8.81 51.44 0.45 4.14 16 22 O -0.43 -3.70 13.63 -17.66 -0.24 -3.94 16 23 S 0.13 1.60 23.39 -107.50 -2.51 -0.92 16 24 C -0.22 -3.34 6.52 -38.61 -0.25 -3.59 16 25 C 0.04 0.59 9.53 -39.40 -0.38 0.22 16 26 H 0.20 3.51 7.80 -54.09 -0.42 3.09 16 27 H 0.10 2.28 6.52 -51.92 -0.34 1.94 16 28 H 0.06 1.15 7.68 -51.93 -0.40 0.76 16 29 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 30 H 0.15 2.32 7.61 -52.49 -0.40 1.92 16 31 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.41 1.76 9.06 45.56 0.41 2.17 16 33 H 0.14 2.16 7.60 -52.49 -0.40 1.77 16 LS Contribution 325.77 15.07 4.91 4.91 Total: -1.00 -31.15 325.77 -8.51 -39.66 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -1.49 Total: 5.28 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -1.88 Total: -21.14 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 0.20 Total: -46.84 kcal Atomic # 8 Polarization: -48.05 SS G_CDS: -2.10 Total: -50.15 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.04 Total: 13.69 kcal Atomic # 16 Polarization: 57.70 SS G_CDS: -3.12 Total: 54.59 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.15 -8.51 -39.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001655087679.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.353 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds