Wall clock time and date at job start Tue Mar 31 2020 20:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47301 * 269.79502 * 3 2 1 5 5 C 1.36938 * 119.99841 * 273.01675 * 4 3 2 6 6 H 1.07994 * 119.99790 * 187.47540 * 5 4 3 7 7 C 1.38810 * 119.99701 * 7.48369 * 5 4 3 8 8 N 1.31611 * 120.00580 * 27.06920 * 7 5 4 9 9 Si 1.86801 * 119.99478 * 207.06232 * 7 5 4 10 10 H 1.48506 * 109.47147 * 90.00306 * 9 7 5 11 11 H 1.48503 * 109.46913 * 210.00076 * 9 7 5 12 12 H 1.48496 * 109.47332 * 329.99973 * 9 7 5 13 13 S 1.65596 * 119.99834 * 93.01867 * 4 3 2 14 14 O 1.42095 * 106.40623 * 336.46092 * 13 4 3 15 15 O 1.42104 * 106.39869 * 203.53729 * 13 4 3 16 16 C 1.76206 * 107.21949 * 90.00151 * 13 4 3 17 17 C 1.38729 * 120.01066 * 89.99693 * 16 13 4 18 18 C 1.37171 * 120.60773 * 179.97438 * 17 16 13 19 19 C 1.41108 * 120.43772 * 0.27591 * 18 17 16 20 20 N 1.34811 * 128.76489 * 180.39190 * 19 18 17 21 21 C 1.28685 * 117.92782 * 179.60210 * 20 19 18 22 22 O 1.35322 * 124.80938 * 179.71616 * 21 20 19 23 23 S 1.75810 * 110.38203 * 359.72255 * 21 20 19 24 24 C 1.39785 * 118.36650 * 359.45961 * 19 18 17 25 25 C 1.37683 * 120.01193 * 269.97579 * 16 13 4 26 26 H 4.40642 * 5.51464 * 179.97438 * 4 1 2 27 27 H 1.09009 * 109.47209 * 149.79474 * 3 2 1 28 28 H 1.09006 * 109.47516 * 29.79700 * 3 2 1 29 29 H 0.97005 * 120.00097 * 180.02562 * 8 7 5 30 30 H 1.08002 * 119.69661 * 359.95612 * 17 16 13 31 31 H 1.08000 * 119.78911 * 180.02562 * 18 17 16 32 32 H 0.96701 * 114.00118 * 0.02562 * 22 21 20 33 33 H 1.08001 * 119.90156 * 0.04361 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1343 0.0058 1.3812 5 6 3.3032 1.1926 2.0433 6 1 3.7752 1.2066 3.0145 7 6 2.8674 2.3774 1.4661 8 7 1.8694 2.3635 0.6082 9 14 3.6974 3.9917 1.9072 10 1 4.8241 4.2406 0.9723 11 1 2.7134 5.0990 1.8025 12 1 4.2145 3.9188 3.2973 13 16 3.4821 -1.4235 2.1417 14 8 2.7244 -2.4259 1.4783 15 8 3.3834 -1.1701 3.5365 16 6 5.1763 -1.7863 1.8207 17 6 6.1601 -1.3257 2.6836 18 6 7.4826 -1.6014 2.4457 19 6 7.8637 -2.3542 1.3147 20 7 9.0997 -2.7261 0.9256 21 6 9.2084 -3.4251 -0.1494 22 8 10.3773 -3.8671 -0.6685 23 16 7.6231 -3.7242 -0.8481 24 6 6.8620 -2.8171 0.4566 25 6 5.5241 -2.5275 0.7137 26 1 -1.0501 0.0002 0.0000 27 1 3.0089 0.8890 -0.5171 28 1 3.0097 -0.8910 -0.5107 29 1 1.5651 3.1914 0.2046 30 1 5.8822 -0.7444 3.5503 31 1 8.2376 -1.2366 3.1264 32 1 11.1567 -3.6121 -0.1561 33 1 4.7572 -2.8851 0.0427 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001655087679.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:11 Heat of formation + Delta-G solvation = 5.918762 kcal Electronic energy + Delta-G solvation = -24140.809020 eV Core-core repulsion = 20387.588260 eV Total energy + Delta-G solvation = -3753.220759 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.023 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -41.56473 -39.55850 -38.21487 -37.90209 -37.09335 -36.74079 -33.55016 -32.78705 -32.32493 -30.79539 -28.22094 -26.05229 -25.59900 -24.33589 -23.37155 -20.64164 -19.98555 -19.69265 -19.55988 -18.98024 -18.30067 -17.93833 -16.99806 -16.77360 -16.47254 -16.19908 -15.89624 -15.70740 -15.26789 -15.00918 -14.91212 -14.60620 -14.39877 -14.18622 -13.70878 -13.47569 -13.19058 -13.04689 -12.76946 -12.66756 -12.56219 -12.24204 -12.15612 -12.06002 -11.93636 -11.37298 -11.34120 -11.12046 -10.89267 -10.48599 -9.98979 -9.75875 -9.34282 -8.06178 -5.71638 -1.00986 -0.51794 -0.37675 -0.07275 0.33232 0.89136 1.50869 1.54467 1.62562 2.02078 2.23455 2.34321 2.44411 2.56641 2.76068 2.93141 3.18916 3.23784 3.43227 3.59549 3.99902 4.02591 4.06543 4.17443 4.42721 4.56909 4.65146 4.84462 4.96382 4.99981 5.31293 5.38880 5.58035 5.72762 5.91134 6.33450 6.50363 7.08615 7.31087 7.42827 8.91139 Molecular weight = 338.02amu Principal moments of inertia in cm(-1) A = 0.014671 B = 0.004074 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.004660 B = 6871.062035 C = 7442.293795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.138 4.138 3 C 0.252 3.748 4 N -0.859 5.859 5 C -0.351 4.351 6 H 0.107 0.893 7 C 0.008 3.992 8 N -0.879 5.879 9 Si 0.960 3.040 10 H -0.273 1.273 11 H -0.292 1.292 12 H -0.267 1.267 13 S 2.686 3.314 14 O -0.990 6.990 15 O -0.987 6.987 16 C -0.668 4.668 17 C -0.012 4.012 18 C -0.096 4.096 19 C 0.150 3.850 20 N -0.556 5.556 21 C 0.323 3.677 22 O -0.415 6.415 23 S 0.174 5.826 24 C -0.240 4.240 25 C 0.040 3.960 26 H 0.228 0.772 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.263 0.737 30 H 0.156 0.844 31 H 0.166 0.834 32 H 0.436 0.564 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.762 -9.435 -4.160 18.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.141 4.141 3 C 0.127 3.873 4 N -0.690 5.690 5 C -0.480 4.480 6 H 0.125 0.875 7 C -0.196 4.196 8 N -0.518 5.518 9 Si 0.786 3.214 10 H -0.199 1.199 11 H -0.219 1.219 12 H -0.191 1.191 13 S 2.779 3.221 14 O -0.980 6.980 15 O -0.977 6.977 16 C -0.758 4.758 17 C -0.034 4.034 18 C -0.118 4.118 19 C 0.030 3.970 20 N -0.291 5.291 21 C 0.001 3.999 22 O -0.217 6.217 23 S 0.422 5.578 24 C -0.359 4.359 25 C 0.017 3.983 26 H 0.245 0.755 27 H 0.114 0.886 28 H 0.105 0.895 29 H 0.073 0.927 30 H 0.174 0.826 31 H 0.184 0.816 32 H 0.298 0.702 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 14.125 -10.590 -4.929 18.329 hybrid contribution 0.771 1.875 1.040 2.278 sum 14.896 -8.715 -3.889 17.691 Atomic orbital electron populations 1.25050 0.96441 1.06332 1.00739 1.23623 0.95391 0.95589 0.99457 1.17930 0.84387 1.01718 0.83264 1.52963 1.74889 1.19810 1.21372 1.19325 1.41112 0.83391 1.04143 0.87521 1.25625 0.95331 1.00978 0.97655 1.70333 1.21641 1.28000 1.31797 0.85445 0.78336 0.78684 0.78977 1.19920 1.21870 1.19088 1.01632 0.75132 0.72276 0.73045 1.93483 1.69442 1.58737 1.76372 1.93456 1.86970 1.85378 1.31936 1.31182 1.26029 1.12895 1.05678 1.20835 0.91518 0.93938 0.97134 1.20897 0.96336 0.98679 0.95874 1.18992 0.85375 0.96719 0.95890 1.66703 1.24871 1.20799 1.16763 1.25467 0.93414 0.91211 0.89793 1.85118 1.13819 1.71573 1.51158 1.84982 0.94229 1.54702 1.23861 1.23772 0.99156 1.10266 1.02731 1.20180 0.93887 0.90635 0.93596 0.75537 0.88560 0.89523 0.92693 0.82601 0.81604 0.70213 0.82628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -11.83 19.25 74.32 1.43 -10.40 16 2 C -0.14 -6.61 11.20 31.12 0.35 -6.26 16 3 C 0.25 11.34 5.10 84.57 0.43 11.77 16 4 N -0.86 -40.30 2.88 -352.50 -1.02 -41.32 16 5 C -0.35 -17.70 9.36 84.03 0.79 -16.91 16 6 H 0.11 5.31 7.43 -2.91 -0.02 5.29 16 7 C 0.01 0.39 4.86 84.86 0.41 0.81 16 8 N -0.88 -45.77 9.10 21.65 0.20 -45.58 16 9 Si 0.96 40.21 29.63 68.60 2.03 42.24 16 10 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 13 S 2.69 115.02 5.60 -56.49 -0.32 114.70 16 14 O -0.99 -44.18 16.28 -128.00 -2.08 -46.26 16 15 O -0.99 -46.94 16.16 -128.00 -2.07 -49.01 16 16 C -0.67 -23.30 5.97 22.26 0.13 -23.16 16 17 C -0.01 -0.38 9.47 22.14 0.21 -0.17 16 18 C -0.10 -2.63 10.10 22.72 0.23 -2.40 16 19 C 0.15 4.18 6.94 39.76 0.28 4.46 16 20 N -0.56 -13.32 10.60 -306.21 -3.25 -16.57 16 21 C 0.32 6.34 8.81 130.70 1.15 7.49 16 22 O -0.42 -5.14 13.63 -86.10 -1.17 -6.31 16 23 S 0.17 3.61 23.39 -56.49 -1.32 2.29 16 24 C -0.24 -6.69 6.52 22.90 0.15 -6.54 16 25 C 0.04 1.25 9.53 22.39 0.21 1.46 16 26 H 0.23 8.04 7.80 -4.41 -0.03 8.01 16 27 H 0.10 4.47 6.52 -2.38 -0.02 4.45 16 28 H 0.09 3.27 7.68 -2.38 -0.02 3.25 16 29 H 0.26 13.21 8.31 -92.70 -0.77 12.44 16 30 H 0.16 4.68 7.61 -2.91 -0.02 4.65 16 31 H 0.17 3.54 8.06 -2.91 -0.02 3.51 16 32 H 0.44 1.51 9.06 -74.06 -0.67 0.84 16 33 H 0.16 4.36 7.60 -2.91 -0.02 4.34 16 Total: -1.00 -68.44 325.77 -2.70 -71.14 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.52 Total: 14.54 kcal Atomic # 6 Polarization: -45.63 SS G_CDS: 5.77 Total: -39.86 kcal Atomic # 7 Polarization: -99.40 SS G_CDS: -4.06 Total: -103.46 kcal Atomic # 8 Polarization: -96.26 SS G_CDS: -5.33 Total: -101.59 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Atomic # 16 Polarization: 118.63 SS G_CDS: -1.64 Total: 116.99 kcal Total: -68.44 -2.70 -71.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001655087679.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.059 kcal (2) G-P(sol) polarization free energy of solvation -68.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds