Wall clock time and date at job start Tue Mar 31 2020 21:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86806 * 119.99848 * 2 1 4 4 H 1.48494 * 109.47098 * 270.00037 * 3 2 1 5 5 H 1.48499 * 109.46743 * 30.00609 * 3 2 1 6 6 H 1.48506 * 109.46735 * 150.00021 * 3 2 1 7 7 C 1.38797 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00329 * 179.97438 * 7 2 1 9 9 S 1.76208 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99720 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.46732 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00247 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99871 * 180.02562 * 11 10 9 14 14 C 1.46492 * 120.00001 * 180.02562 * 13 11 10 15 15 H 1.09004 * 110.64735 * 323.29819 * 14 13 11 16 16 C 1.54593 * 110.72570 * 86.45402 * 14 13 11 17 17 C 1.53995 * 105.14333 * 140.31274 * 16 14 13 18 18 N 1.47904 * 107.05643 * 1.22871 * 17 16 14 19 19 C 1.46895 * 110.99800 * 214.15443 * 18 17 16 20 20 C 1.50700 * 109.47237 * 176.31182 * 19 18 17 21 21 Cl 1.73605 * 120.00149 * 292.47490 * 20 19 18 22 22 C 1.31296 * 120.00108 * 112.47246 * 20 19 18 23 23 Cl 1.73598 * 119.99936 * 180.02562 * 22 20 19 24 24 C 1.48532 * 105.81893 * 334.66723 * 18 17 16 25 25 H 0.96999 * 119.99683 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47012 * 59.99974 * 10 9 7 27 27 H 1.08995 * 109.47374 * 299.99789 * 10 9 7 28 28 H 0.97007 * 119.99785 * 359.97438 * 13 11 10 29 29 H 1.09005 * 110.30802 * 21.39625 * 16 14 13 30 30 H 1.08996 * 110.30982 * 259.22986 * 16 14 13 31 31 H 1.08994 * 109.91943 * 241.87034 * 17 16 14 32 32 H 1.09000 * 110.07985 * 120.66894 * 17 16 14 33 33 H 1.09005 * 109.47476 * 56.31591 * 19 18 17 34 34 H 1.08995 * 109.47506 * 296.31442 * 19 18 17 35 35 H 1.08001 * 119.99912 * 0.27755 * 22 20 19 36 36 H 1.09000 * 110.66993 * 157.64221 * 24 18 17 37 37 H 1.09000 * 110.66716 * 280.77520 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5479 1.4402 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0019 10 6 2.5160 -3.8914 -0.0029 11 6 1.9875 -5.3027 -0.0036 12 8 0.7912 -5.5023 -0.0029 13 7 2.8442 -6.3431 -0.0039 14 6 2.3305 -7.7150 -0.0050 15 1 1.4296 -7.7886 0.6041 16 6 2.0556 -8.1950 -1.4486 17 6 2.5195 -9.6631 -1.4796 18 7 2.9980 -9.9957 -0.1202 19 6 4.1226 -10.9392 -0.1742 20 6 4.6406 -11.1838 1.2197 21 17 5.4264 -9.9040 2.0907 22 6 4.4975 -12.3647 1.7755 23 17 5.0936 -12.6461 3.3814 24 6 3.4136 -8.7065 0.4894 25 1 -0.4849 0.8401 0.0004 26 1 3.1245 -3.7321 0.8871 27 1 3.1246 -3.7306 -0.8927 28 1 3.8011 -6.1835 -0.0041 29 1 2.6298 -7.6018 -2.1604 30 1 0.9909 -8.1299 -1.6727 31 1 3.3305 -9.7813 -2.1981 32 1 1.6870 -10.3130 -1.7495 33 1 4.9191 -10.5206 -0.7894 34 1 3.7861 -11.8812 -0.6072 35 1 4.0126 -13.1621 1.2320 36 1 3.4049 -8.7748 1.5772 37 1 4.3990 -8.4107 0.1293 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660961552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:34 Heat of formation + Delta-G solvation = -24.307182 kcal Electronic energy + Delta-G solvation = -21548.677963 eV Core-core repulsion = 17925.503047 eV Total energy + Delta-G solvation = -3623.174916 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.05057 -38.65831 -37.51158 -36.80299 -34.93737 -33.36690 -32.42985 -30.76443 -29.54589 -28.06986 -25.71714 -25.41782 -21.96546 -21.51459 -20.46410 -20.12442 -17.88191 -17.28280 -16.76269 -16.40266 -15.96985 -15.61345 -14.84829 -14.80851 -14.59537 -14.20461 -13.83914 -13.76690 -13.42986 -13.18774 -13.09401 -12.57853 -12.54453 -12.43865 -12.14179 -11.92708 -11.70725 -11.50062 -11.34678 -11.06727 -11.02813 -10.95917 -10.77748 -10.73019 -9.81901 -9.51767 -9.40483 -9.07352 -8.92387 -8.91262 -8.23987 -6.50188 -6.21883 -3.92436 0.98660 1.44403 1.88103 2.95580 3.07119 3.22112 3.25955 3.30165 3.51884 3.82934 4.10899 4.20087 4.26173 4.47369 4.64826 4.81866 4.88323 4.96113 5.01234 5.13148 5.13591 5.16897 5.31019 5.32899 5.59795 5.62162 5.68656 5.86933 5.94515 6.01248 6.13198 6.30157 6.41966 6.66712 7.59326 7.68421 8.34987 8.60141 9.23450 10.85504 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.022747 B = 0.002053 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.633781 B =13632.232281 C =14364.718760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.534 3.466 12 O -0.514 6.514 13 N -0.732 5.732 14 C 0.145 3.855 15 H 0.102 0.898 16 C -0.144 4.144 17 C 0.039 3.961 18 N -0.509 5.509 19 C 0.090 3.910 20 C -0.064 4.064 21 Cl -0.056 7.056 22 C -0.086 4.086 23 Cl -0.067 7.067 24 C 0.023 3.977 25 H 0.268 0.732 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.397 0.603 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.169 0.831 36 H 0.097 0.903 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.685 -27.448 -0.206 30.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.320 3.680 12 O -0.387 6.387 13 N -0.387 5.387 14 C 0.039 3.961 15 H 0.120 0.880 16 C -0.183 4.183 17 C -0.089 4.089 18 N -0.233 5.233 19 C -0.039 4.039 20 C -0.093 4.093 21 Cl -0.027 7.027 22 C -0.132 4.132 23 Cl -0.038 7.038 24 C -0.105 4.105 25 H 0.078 0.922 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.231 0.769 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.121 0.879 35 H 0.186 0.814 36 H 0.115 0.885 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.212 -27.838 0.308 29.654 hybrid contribution 3.228 1.729 -0.361 3.680 sum 13.440 -26.109 -0.054 29.366 Atomic orbital electron populations 1.70019 1.05939 1.27452 1.46852 1.24996 0.95035 0.99031 0.94552 0.86168 0.79417 0.81582 0.78335 1.20280 1.20739 1.19706 1.22864 0.94897 0.91662 1.58944 0.90947 1.85403 1.04872 0.96302 1.96715 1.23535 1.06602 0.95375 1.04911 1.20316 0.86550 0.86216 0.74910 1.90705 1.15300 1.85522 1.47221 1.45989 1.09828 1.05005 1.77848 1.21735 0.97583 0.80649 0.96116 0.87965 1.22862 1.03288 0.94405 0.97779 1.22898 1.00151 0.96999 0.88851 1.64884 1.29913 1.10228 1.18257 1.21349 0.93080 0.99315 0.90121 1.23415 0.99917 0.89860 0.96076 1.98414 1.78223 1.50623 1.75469 1.24590 1.01889 0.98147 0.88618 1.98405 1.86360 1.96475 1.22587 1.23791 0.96856 0.88408 1.01440 0.92180 0.89209 0.89271 0.76884 0.90740 0.89904 0.93317 0.89612 0.91983 0.87916 0.81366 0.88486 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.16 13.22 55.49 0.73 -25.42 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.23 9.50 30.94 0.29 -14.94 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 11 C 0.53 9.78 7.84 -10.98 -0.09 9.69 16 12 O -0.51 -11.48 15.59 5.56 0.09 -11.39 16 13 N -0.73 -9.56 5.14 -52.01 -0.27 -9.83 16 14 C 0.15 1.71 3.35 -66.07 -0.22 1.49 16 15 H 0.10 1.45 7.69 -51.93 -0.40 1.05 16 16 C -0.14 -1.49 6.67 -25.38 -0.17 -1.66 16 17 C 0.04 0.30 6.70 -2.75 -0.02 0.28 16 18 N -0.51 -4.09 5.34 -231.89 -1.24 -5.33 16 19 C 0.09 0.52 5.21 -4.98 -0.03 0.49 16 20 C -0.06 -0.43 5.83 -36.10 -0.21 -0.65 16 21 Cl -0.06 -0.47 24.22 -51.86 -1.26 -1.72 16 22 C -0.09 -0.51 10.43 28.94 0.30 -0.21 16 23 Cl -0.07 -0.50 27.92 -51.86 -1.45 -1.95 16 24 C 0.02 0.21 4.30 -1.90 -0.01 0.20 16 25 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 27 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 28 H 0.40 4.07 8.53 -40.82 -0.35 3.73 16 29 H 0.07 0.78 8.05 -51.93 -0.42 0.36 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.05 0.31 7.68 -51.93 -0.40 -0.09 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.33 7.98 -51.93 -0.41 -0.08 16 34 H 0.10 0.39 7.81 -51.93 -0.41 -0.02 16 35 H 0.17 0.54 7.85 -52.49 -0.41 0.13 16 36 H 0.10 0.97 6.51 -51.93 -0.34 0.63 16 37 H 0.06 0.46 7.47 -51.93 -0.39 0.08 16 LS Contribution 352.60 15.07 5.31 5.31 Total: -1.00 -33.89 352.60 -10.09 -43.98 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -4.76 Total: -0.05 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -0.02 Total: -6.15 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: -0.77 Total: -40.58 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -2.70 Total: -3.67 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.89 -10.09 -43.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660961552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.673 kcal (2) G-P(sol) polarization free energy of solvation -33.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds