Wall clock time and date at job start Tue Mar 31 2020 21:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86806 * 119.99848 * 2 1 4 4 H 1.48494 * 109.47098 * 270.00037 * 3 2 1 5 5 H 1.48499 * 109.46743 * 30.00609 * 3 2 1 6 6 H 1.48506 * 109.46735 * 150.00021 * 3 2 1 7 7 C 1.38797 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00329 * 179.97438 * 7 2 1 9 9 S 1.76208 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99720 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.46732 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00247 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99871 * 180.02562 * 11 10 9 14 14 C 1.46492 * 120.00001 * 180.02562 * 13 11 10 15 15 H 1.09004 * 110.64735 * 323.29819 * 14 13 11 16 16 C 1.54593 * 110.72570 * 86.45402 * 14 13 11 17 17 C 1.53995 * 105.14333 * 140.31274 * 16 14 13 18 18 N 1.47904 * 107.05643 * 1.22871 * 17 16 14 19 19 C 1.46895 * 110.99800 * 214.15443 * 18 17 16 20 20 C 1.50700 * 109.47237 * 176.31182 * 19 18 17 21 21 Cl 1.73605 * 120.00149 * 292.47490 * 20 19 18 22 22 C 1.31296 * 120.00108 * 112.47246 * 20 19 18 23 23 Cl 1.73598 * 119.99936 * 180.02562 * 22 20 19 24 24 C 1.48532 * 105.81893 * 334.66723 * 18 17 16 25 25 H 0.96999 * 119.99683 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47012 * 59.99974 * 10 9 7 27 27 H 1.08995 * 109.47374 * 299.99789 * 10 9 7 28 28 H 0.97007 * 119.99785 * 359.97438 * 13 11 10 29 29 H 1.09005 * 110.30802 * 21.39625 * 16 14 13 30 30 H 1.08996 * 110.30982 * 259.22986 * 16 14 13 31 31 H 1.08994 * 109.91943 * 241.87034 * 17 16 14 32 32 H 1.09000 * 110.07985 * 120.66894 * 17 16 14 33 33 H 1.09005 * 109.47476 * 56.31591 * 19 18 17 34 34 H 1.08995 * 109.47506 * 296.31442 * 19 18 17 35 35 H 1.08001 * 119.99912 * 0.27755 * 22 20 19 36 36 H 1.09000 * 110.66993 * 157.64221 * 24 18 17 37 37 H 1.09000 * 110.66716 * 280.77520 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5479 1.4402 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0019 10 6 2.5160 -3.8914 -0.0029 11 6 1.9875 -5.3027 -0.0036 12 8 0.7912 -5.5023 -0.0029 13 7 2.8442 -6.3431 -0.0039 14 6 2.3305 -7.7150 -0.0050 15 1 1.4296 -7.7886 0.6041 16 6 2.0556 -8.1950 -1.4486 17 6 2.5195 -9.6631 -1.4796 18 7 2.9980 -9.9957 -0.1202 19 6 4.1226 -10.9392 -0.1742 20 6 4.6406 -11.1838 1.2197 21 17 5.4264 -9.9040 2.0907 22 6 4.4975 -12.3647 1.7755 23 17 5.0936 -12.6461 3.3814 24 6 3.4136 -8.7065 0.4894 25 1 -0.4849 0.8401 0.0004 26 1 3.1245 -3.7321 0.8871 27 1 3.1246 -3.7306 -0.8927 28 1 3.8011 -6.1835 -0.0041 29 1 2.6298 -7.6018 -2.1604 30 1 0.9909 -8.1299 -1.6727 31 1 3.3305 -9.7813 -2.1981 32 1 1.6870 -10.3130 -1.7495 33 1 4.9191 -10.5206 -0.7894 34 1 3.7861 -11.8812 -0.6072 35 1 4.0126 -13.1621 1.2320 36 1 3.4049 -8.7748 1.5772 37 1 4.3990 -8.4107 0.1293 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660961552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:33 Heat of formation + Delta-G solvation = -48.685743 kcal Electronic energy + Delta-G solvation = -21549.735097 eV Core-core repulsion = 17925.503047 eV Total energy + Delta-G solvation = -3624.232050 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.08276 -39.73188 -38.11182 -37.34429 -35.86329 -34.58765 -34.22439 -31.76535 -30.60229 -29.10631 -27.65753 -26.25785 -22.77726 -22.46976 -21.30346 -21.00786 -19.84128 -18.05063 -17.93389 -17.32974 -16.94940 -16.87715 -16.33527 -16.18429 -15.97018 -15.18583 -14.85440 -14.70055 -14.44586 -14.31694 -14.06271 -13.74804 -13.71241 -13.16959 -13.14696 -12.92325 -12.85308 -12.77205 -12.62841 -12.48574 -12.21500 -11.88652 -11.73700 -11.72344 -11.45434 -11.14513 -10.97490 -10.27961 -10.15039 -10.00331 -9.48728 -8.66865 -8.34882 -6.12919 0.51705 0.93988 1.26108 1.42238 1.42461 1.46327 1.56816 1.59729 2.18606 2.27458 2.99180 3.03721 3.32357 3.48043 3.56452 3.84985 3.98364 4.05173 4.15717 4.25115 4.29500 4.33741 4.49201 4.50240 4.63349 4.64266 4.80895 4.85787 4.95118 5.04501 5.15642 5.40468 5.41722 5.73110 5.86294 6.19628 6.47922 7.06402 7.23258 8.74280 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.022747 B = 0.002053 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.633781 B =13632.232281 C =14364.718760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.129 4.129 11 C 0.537 3.463 12 O -0.562 6.562 13 N -0.706 5.706 14 C 0.139 3.861 15 H 0.073 0.927 16 C -0.143 4.143 17 C 0.048 3.952 18 N -0.518 5.518 19 C 0.092 3.908 20 C -0.076 4.076 21 Cl -0.078 7.078 22 C -0.078 4.078 23 Cl -0.085 7.085 24 C 0.037 3.963 25 H 0.271 0.729 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.415 0.585 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.130 0.870 35 H 0.200 0.800 36 H 0.088 0.912 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.221 -28.678 -1.021 32.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.281 4.281 11 C 0.323 3.677 12 O -0.439 6.439 13 N -0.360 5.360 14 C 0.033 3.967 15 H 0.091 0.909 16 C -0.182 4.182 17 C -0.080 4.080 18 N -0.243 5.243 19 C -0.036 4.036 20 C -0.104 4.104 21 Cl -0.049 7.049 22 C -0.124 4.124 23 Cl -0.056 7.056 24 C -0.091 4.091 25 H 0.080 0.920 26 H 0.127 0.873 27 H 0.129 0.871 28 H 0.252 0.748 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.148 0.852 35 H 0.216 0.784 36 H 0.106 0.894 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.806 -29.114 -0.510 31.810 hybrid contribution 2.463 1.941 -0.111 3.138 sum 15.269 -27.173 -0.621 31.176 Atomic orbital electron populations 1.70185 1.07958 1.28600 1.48004 1.26138 0.95984 1.03343 0.93775 0.84950 0.78177 0.76017 0.78811 1.19244 1.20330 1.18237 1.23200 0.95334 0.91997 1.58834 0.89921 1.85586 1.10508 0.99209 1.97047 1.23372 1.03575 0.94335 1.06785 1.20052 0.86246 0.86583 0.74855 1.90696 1.17348 1.86013 1.49877 1.45709 1.10143 1.04620 1.75558 1.21835 0.97669 0.80096 0.97088 0.90909 1.22804 1.02226 0.96707 0.96442 1.22846 1.01192 0.94759 0.89178 1.64880 1.31254 1.09734 1.18440 1.21482 0.92586 0.99885 0.89644 1.23624 1.00605 0.89567 0.96652 1.98411 1.78746 1.51692 1.76065 1.25035 1.00955 0.98755 0.87665 1.98409 1.86612 1.96513 1.24092 1.23624 0.96192 0.88313 1.00974 0.91998 0.87333 0.87117 0.74789 0.90596 0.91912 0.91077 0.88744 0.90949 0.85183 0.78363 0.89384 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.14 13.22 21.65 0.29 -55.85 16 2 C 0.01 0.70 5.49 84.86 0.47 1.17 16 3 Si 1.00 43.65 29.55 68.60 2.03 45.67 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 7 C -0.55 -31.19 9.50 67.95 0.65 -30.55 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 9 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 10 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 11 C 0.54 19.69 7.84 87.66 0.69 20.38 16 12 O -0.56 -26.01 15.59 -3.04 -0.05 -26.06 16 13 N -0.71 -17.72 5.14 -436.84 -2.25 -19.97 16 14 C 0.14 3.18 3.35 46.20 0.15 3.33 16 15 H 0.07 2.14 7.69 -2.39 -0.02 2.12 16 16 C -0.14 -2.81 6.67 31.47 0.21 -2.60 16 17 C 0.05 0.60 6.70 86.45 0.58 1.18 16 18 N -0.52 -6.97 5.34 -887.58 -4.74 -11.71 16 19 C 0.09 0.73 5.21 85.56 0.45 1.18 16 20 C -0.08 -0.84 5.83 25.36 0.15 -0.69 16 21 Cl -0.08 -1.18 24.22 -2.72 -0.07 -1.25 16 22 C -0.08 -0.72 10.43 67.49 0.70 -0.01 16 23 Cl -0.08 -1.16 27.92 -2.72 -0.08 -1.23 16 24 C 0.04 0.62 4.30 86.65 0.37 0.99 16 25 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 26 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 27 H 0.11 3.88 8.14 -2.40 -0.02 3.87 16 28 H 0.41 7.57 8.53 -92.70 -0.79 6.78 16 29 H 0.08 1.47 8.05 -2.38 -0.02 1.45 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 0.62 7.68 -2.39 -0.02 0.60 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 0.48 7.98 -2.38 -0.02 0.46 16 34 H 0.13 0.37 7.81 -2.39 -0.02 0.36 16 35 H 0.20 0.53 7.85 -2.91 -0.02 0.50 16 36 H 0.09 1.66 6.51 -2.39 -0.02 1.64 16 37 H 0.07 0.96 7.47 -2.39 -0.02 0.95 16 Total: -1.00 -76.73 352.60 -0.86 -77.60 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.31 Total: 12.64 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 4.85 Total: -10.29 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -6.70 Total: -87.53 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.05 Total: -26.06 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Atomic # 17 Polarization: -2.34 SS G_CDS: -0.14 Total: -2.48 kcal Total: -76.73 -0.86 -77.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660961552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.913 kcal (2) G-P(sol) polarization free energy of solvation -76.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds