Wall clock time and date at job start Tue Mar 31 2020 21:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86801 * 119.99754 * 2 1 4 4 H 1.48500 * 109.47061 * 269.99398 * 3 2 1 5 5 H 1.48501 * 109.47369 * 29.99939 * 3 2 1 6 6 H 1.48499 * 109.47062 * 149.99681 * 3 2 1 7 7 C 1.38800 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99694 * 0.02562 * 7 2 1 9 9 S 1.76192 * 120.00077 * 180.02562 * 7 2 1 10 10 C 1.81005 * 99.99891 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47057 * 179.97438 * 10 9 7 12 12 O 1.21289 * 120.00000 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99986 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99984 * 179.97438 * 13 11 10 15 15 H 1.09006 * 110.87210 * 37.39857 * 14 13 11 16 16 C 1.55133 * 110.99455 * 273.55147 * 14 13 11 17 17 C 1.54320 * 103.01965 * 206.25484 * 16 14 13 18 18 N 1.47449 * 107.23199 * 22.28393 * 17 16 14 19 19 C 1.46895 * 110.99874 * 123.25884 * 18 17 16 20 20 C 1.50702 * 109.47568 * 69.87156 * 19 18 17 21 21 Cl 1.73598 * 119.99781 * 294.72688 * 20 19 18 22 22 C 1.31294 * 119.99991 * 114.99578 * 20 19 18 23 23 Cl 1.73601 * 119.99717 * 359.72734 * 22 20 19 24 24 C 1.47841 * 108.56623 * 0.98628 * 18 17 16 25 25 H 0.97001 * 120.00236 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47015 * 60.00079 * 10 9 7 27 27 H 1.09001 * 109.47020 * 299.99953 * 10 9 7 28 28 H 0.96998 * 120.00250 * 0.02562 * 13 11 10 29 29 H 1.08999 * 110.70977 * 87.87366 * 16 14 13 30 30 H 1.09008 * 110.70348 * 324.63815 * 16 14 13 31 31 H 1.08996 * 109.89069 * 262.87230 * 17 16 14 32 32 H 1.09000 * 110.01885 * 141.76124 * 17 16 14 33 33 H 1.09003 * 109.47103 * 309.87153 * 19 18 17 34 34 H 1.09000 * 109.46948 * 189.87206 * 19 18 17 35 35 H 1.07999 * 119.99936 * 179.72931 * 22 20 19 36 36 H 1.08998 * 110.37134 * 94.73265 * 24 18 17 37 37 H 1.08994 * 110.37340 * 217.07718 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7723 -1.2019 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5731 -3.2324 0.0008 12 8 6.3441 -2.2961 0.0014 13 7 6.0458 -4.4946 0.0011 14 6 7.4908 -4.7356 0.0005 15 1 8.0073 -4.0011 0.6185 16 6 8.0530 -4.7392 -1.4454 17 6 9.3069 -5.6313 -1.3287 18 7 9.1265 -6.4849 -0.1400 19 6 9.2235 -7.9073 -0.4938 20 6 10.6478 -8.2384 -0.8583 21 17 11.3717 -7.5254 -2.2659 22 6 11.3395 -9.0701 -0.1143 23 17 10.6156 -9.7829 1.2934 24 6 7.8130 -6.1778 0.4652 25 1 -0.4850 0.8400 -0.0004 26 1 3.6441 -3.4313 -0.8894 27 1 3.6434 -3.4317 0.8907 28 1 5.4292 -5.2434 0.0011 29 1 8.3253 -3.7304 -1.7556 30 1 7.3328 -5.1753 -2.1378 31 1 10.1941 -5.0098 -1.2078 32 1 9.4075 -6.2519 -2.2191 33 1 8.5733 -8.1155 -1.3435 34 1 8.9156 -8.5151 0.3569 35 1 12.3588 -9.3107 -0.3779 36 1 7.0557 -6.8719 0.1007 37 1 7.8768 -6.2209 1.5524 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660961555.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:44 Heat of formation + Delta-G solvation = -23.463707 kcal Electronic energy + Delta-G solvation = -21513.517539 eV Core-core repulsion = 17890.379199 eV Total energy + Delta-G solvation = -3623.138340 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.11803 -38.78620 -37.59385 -37.10147 -34.87087 -33.35017 -32.45099 -30.85523 -29.66420 -28.20900 -25.79649 -25.55771 -21.97460 -21.51044 -20.67149 -20.05704 -17.91756 -17.45671 -16.68577 -16.52560 -15.86068 -15.78023 -15.02313 -15.00880 -14.75095 -13.92648 -13.81310 -13.76897 -13.60325 -13.31330 -12.97371 -12.84394 -12.80041 -12.58073 -12.27573 -12.16304 -11.80121 -11.61384 -11.34609 -11.27590 -11.01969 -10.90841 -10.82180 -10.61902 -9.87227 -9.59040 -9.51476 -9.05659 -8.99979 -8.79666 -8.51867 -6.93477 -6.30204 -4.02131 0.93731 1.03651 2.26415 2.70204 2.91892 3.18020 3.32272 3.49572 3.52729 3.76625 3.92755 4.25013 4.32048 4.49312 4.57678 4.71998 4.88367 4.91444 4.96589 5.08801 5.10213 5.12915 5.20627 5.29089 5.36281 5.57123 5.69220 5.73203 5.87864 5.97520 6.00043 6.36772 6.48931 6.55899 7.54988 7.92770 8.40130 8.44735 9.15921 10.78960 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.030052 B = 0.001950 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.487717 B =14358.595880 C =14900.933028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.124 4.124 11 C 0.533 3.467 12 O -0.516 6.516 13 N -0.730 5.730 14 C 0.142 3.858 15 H 0.104 0.896 16 C -0.155 4.155 17 C 0.035 3.965 18 N -0.517 5.517 19 C 0.075 3.925 20 C -0.053 4.053 21 Cl -0.049 7.049 22 C -0.090 4.090 23 Cl -0.058 7.058 24 C 0.038 3.962 25 H 0.271 0.729 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.399 0.601 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.108 0.892 35 H 0.159 0.841 36 H 0.055 0.945 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.913 -22.527 -1.700 32.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.319 3.681 12 O -0.390 6.390 13 N -0.384 5.384 14 C 0.035 3.965 15 H 0.122 0.878 16 C -0.195 4.195 17 C -0.093 4.093 18 N -0.241 5.241 19 C -0.053 4.053 20 C -0.081 4.081 21 Cl -0.021 7.021 22 C -0.136 4.136 23 Cl -0.030 7.030 24 C -0.090 4.090 25 H 0.081 0.919 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.233 0.767 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.125 0.875 35 H 0.177 0.823 36 H 0.073 0.927 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 24.412 -20.743 -1.335 32.062 hybrid contribution -1.657 -0.909 -0.743 2.030 sum 22.755 -21.652 -2.079 31.479 Atomic orbital electron populations 1.69938 1.05912 1.27782 1.48030 1.24720 0.94464 0.98990 0.93179 0.86731 0.81904 0.83261 0.79933 1.19215 1.19930 1.15901 1.22313 0.88269 0.97531 1.58822 0.89391 1.84801 1.09281 0.99953 1.97426 1.23281 0.93911 1.04480 1.05814 1.20293 0.90590 0.82225 0.74988 1.90708 1.58731 1.42113 1.47405 1.45881 1.06637 1.08198 1.77640 1.21948 0.81629 0.96448 0.96448 0.87793 1.23220 0.97221 1.01532 0.97496 1.23124 0.98698 0.95629 0.91858 1.63622 1.30698 1.02697 1.27076 1.21566 0.90449 0.91484 1.01794 1.23110 0.96572 0.97474 0.90929 1.98405 1.82546 1.82458 1.38687 1.24342 0.99776 0.99256 0.90257 1.98391 1.83181 1.82015 1.39383 1.23235 0.89431 0.95371 1.00916 0.91930 0.88533 0.88404 0.76665 0.89748 0.91064 0.89834 0.91503 0.92183 0.87453 0.82340 0.92668 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.46 13.97 55.49 0.78 -25.68 16 2 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.72 27.74 -169.99 -4.72 17.00 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.24 -5.95 6.74 56.52 0.38 -5.56 16 7 C -0.52 -14.93 10.04 30.94 0.31 -14.62 16 8 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 9 S -0.14 -3.54 18.55 -107.50 -1.99 -5.53 16 10 C -0.12 -2.34 6.16 36.00 0.22 -2.11 16 11 C 0.53 9.10 7.85 -10.99 -0.09 9.02 16 12 O -0.52 -10.81 15.61 5.55 0.09 -10.73 16 13 N -0.73 -8.71 5.23 -51.74 -0.27 -8.98 16 14 C 0.14 1.53 3.31 -65.80 -0.22 1.31 16 15 H 0.10 1.35 7.73 -51.93 -0.40 0.95 16 16 C -0.16 -1.59 6.64 -24.91 -0.17 -1.76 16 17 C 0.03 0.30 5.52 -2.83 -0.02 0.28 16 18 N -0.52 -4.29 5.15 -232.69 -1.20 -5.49 16 19 C 0.08 0.51 4.82 -4.98 -0.02 0.49 16 20 C -0.05 -0.35 6.00 -36.10 -0.22 -0.56 16 21 Cl -0.05 -0.34 25.93 -51.86 -1.34 -1.69 16 22 C -0.09 -0.51 10.54 28.94 0.31 -0.21 16 23 Cl -0.06 -0.36 26.97 -51.86 -1.40 -1.76 16 24 C 0.04 0.31 6.31 -2.30 -0.01 0.30 16 25 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.10 1.69 8.14 -51.91 -0.42 1.26 16 27 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 28 H 0.40 3.60 8.52 -40.82 -0.35 3.25 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.54 5.57 -51.93 -0.29 0.25 16 33 H 0.06 0.39 7.96 -51.93 -0.41 -0.03 16 34 H 0.11 0.69 5.94 -51.93 -0.31 0.38 16 35 H 0.16 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 349.40 15.07 5.27 5.27 Total: -1.00 -32.93 349.40 -9.49 -42.42 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -4.69 Total: 0.34 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 0.00 Total: -5.18 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: -0.69 Total: -40.15 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.72 Total: 17.00 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.53 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -2.74 Total: -3.45 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.93 -9.49 -42.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660961555.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.955 kcal (2) G-P(sol) polarization free energy of solvation -32.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds