Wall clock time and date at job start Tue Mar 31 2020 21:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86801 * 119.99754 * 2 1 4 4 H 1.48500 * 109.47061 * 269.99398 * 3 2 1 5 5 H 1.48501 * 109.47369 * 29.99939 * 3 2 1 6 6 H 1.48499 * 109.47062 * 149.99681 * 3 2 1 7 7 C 1.38800 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99694 * 0.02562 * 7 2 1 9 9 S 1.76192 * 120.00077 * 180.02562 * 7 2 1 10 10 C 1.81005 * 99.99891 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47057 * 179.97438 * 10 9 7 12 12 O 1.21289 * 120.00000 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99986 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99984 * 179.97438 * 13 11 10 15 15 H 1.09006 * 110.87210 * 37.39857 * 14 13 11 16 16 C 1.55133 * 110.99455 * 273.55147 * 14 13 11 17 17 C 1.54320 * 103.01965 * 206.25484 * 16 14 13 18 18 N 1.47449 * 107.23199 * 22.28393 * 17 16 14 19 19 C 1.46895 * 110.99874 * 123.25884 * 18 17 16 20 20 C 1.50702 * 109.47568 * 69.87156 * 19 18 17 21 21 Cl 1.73598 * 119.99781 * 294.72688 * 20 19 18 22 22 C 1.31294 * 119.99991 * 114.99578 * 20 19 18 23 23 Cl 1.73601 * 119.99717 * 359.72734 * 22 20 19 24 24 C 1.47841 * 108.56623 * 0.98628 * 18 17 16 25 25 H 0.97001 * 120.00236 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47015 * 60.00079 * 10 9 7 27 27 H 1.09001 * 109.47020 * 299.99953 * 10 9 7 28 28 H 0.96998 * 120.00250 * 0.02562 * 13 11 10 29 29 H 1.08999 * 110.70977 * 87.87366 * 16 14 13 30 30 H 1.09008 * 110.70348 * 324.63815 * 16 14 13 31 31 H 1.08996 * 109.89069 * 262.87230 * 17 16 14 32 32 H 1.09000 * 110.01885 * 141.76124 * 17 16 14 33 33 H 1.09003 * 109.47103 * 309.87153 * 19 18 17 34 34 H 1.09000 * 109.46948 * 189.87206 * 19 18 17 35 35 H 1.07999 * 119.99936 * 179.72931 * 22 20 19 36 36 H 1.08998 * 110.37134 * 94.73265 * 24 18 17 37 37 H 1.08994 * 110.37340 * 217.07718 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7723 -1.2019 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5731 -3.2324 0.0008 12 8 6.3441 -2.2961 0.0014 13 7 6.0458 -4.4946 0.0011 14 6 7.4908 -4.7356 0.0005 15 1 8.0073 -4.0011 0.6185 16 6 8.0530 -4.7392 -1.4454 17 6 9.3069 -5.6313 -1.3287 18 7 9.1265 -6.4849 -0.1400 19 6 9.2235 -7.9073 -0.4938 20 6 10.6478 -8.2384 -0.8583 21 17 11.3717 -7.5254 -2.2659 22 6 11.3395 -9.0701 -0.1143 23 17 10.6156 -9.7829 1.2934 24 6 7.8130 -6.1778 0.4652 25 1 -0.4850 0.8400 -0.0004 26 1 3.6441 -3.4313 -0.8894 27 1 3.6434 -3.4317 0.8907 28 1 5.4292 -5.2434 0.0011 29 1 8.3253 -3.7304 -1.7556 30 1 7.3328 -5.1753 -2.1378 31 1 10.1941 -5.0098 -1.2078 32 1 9.4075 -6.2519 -2.2191 33 1 8.5733 -8.1155 -1.3435 34 1 8.9156 -8.5151 0.3569 35 1 12.3588 -9.3107 -0.3779 36 1 7.0557 -6.8719 0.1007 37 1 7.8768 -6.2209 1.5524 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660961555.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:44 Heat of formation + Delta-G solvation = -46.736526 kcal Electronic energy + Delta-G solvation = -21514.526724 eV Core-core repulsion = 17890.379199 eV Total energy + Delta-G solvation = -3624.147525 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.11407 -39.79558 -38.17754 -37.59002 -35.78791 -34.67179 -34.13352 -31.80957 -30.70912 -29.15634 -27.84805 -26.38371 -22.82270 -22.30371 -21.73780 -20.73477 -19.89756 -18.19268 -17.91122 -17.35624 -17.10275 -16.79501 -16.43926 -16.30473 -15.96569 -15.27018 -14.89420 -14.74522 -14.58480 -14.40543 -14.18705 -13.80717 -13.51725 -13.39095 -13.34076 -13.14598 -13.01476 -12.74178 -12.68629 -12.56109 -12.39372 -12.03037 -11.86628 -11.57205 -11.40223 -11.17211 -11.02995 -10.53216 -10.16764 -9.99632 -9.42122 -8.99464 -8.51596 -6.22187 0.46510 0.56240 0.98709 1.31257 1.46609 1.54887 1.55128 1.80027 2.13943 2.25108 2.69979 2.86638 2.99688 3.38829 3.51287 3.76239 3.86345 3.99411 4.15065 4.23206 4.25516 4.30651 4.47006 4.47646 4.59411 4.68566 4.78643 4.86253 4.90512 5.03073 5.14135 5.41570 5.70733 5.79421 5.87279 6.11561 6.45055 6.93711 7.18617 8.60651 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.030052 B = 0.001950 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.487717 B =14358.595880 C =14900.933028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.260 1.260 6 H -0.237 1.237 7 C -0.528 4.528 8 H 0.063 0.937 9 S -0.177 6.177 10 C -0.111 4.111 11 C 0.538 3.462 12 O -0.560 6.560 13 N -0.703 5.703 14 C 0.138 3.862 15 H 0.080 0.920 16 C -0.152 4.152 17 C 0.044 3.956 18 N -0.525 5.525 19 C 0.075 3.925 20 C -0.065 4.065 21 Cl -0.055 7.055 22 C -0.081 4.081 23 Cl -0.062 7.062 24 C 0.048 3.952 25 H 0.277 0.723 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.418 0.582 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.114 0.886 35 H 0.175 0.825 36 H 0.077 0.923 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.166 -24.164 -1.682 34.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.161 4.161 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.161 1.161 7 C -0.675 4.675 8 H 0.081 0.919 9 S 0.050 5.950 10 C -0.262 4.262 11 C 0.324 3.676 12 O -0.437 6.437 13 N -0.357 5.357 14 C 0.032 3.968 15 H 0.099 0.901 16 C -0.192 4.192 17 C -0.084 4.084 18 N -0.249 5.249 19 C -0.052 4.052 20 C -0.093 4.093 21 Cl -0.026 7.026 22 C -0.127 4.127 23 Cl -0.033 7.033 24 C -0.079 4.079 25 H 0.086 0.914 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.255 0.745 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.132 0.868 35 H 0.192 0.808 36 H 0.095 0.905 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 25.661 -22.444 -1.315 34.117 hybrid contribution -1.995 -0.594 -0.745 2.210 sum 23.667 -23.037 -2.060 33.092 Atomic orbital electron populations 1.70015 1.07268 1.29000 1.49173 1.25568 0.95287 1.02262 0.92966 0.85869 0.80686 0.79653 0.80180 1.18746 1.18394 1.16074 1.22459 0.90251 0.96684 1.58152 0.91860 1.84743 1.06415 1.06286 1.97587 1.23268 0.95774 0.99564 1.07560 1.19954 0.89370 0.83324 0.74975 1.90702 1.59291 1.43809 1.49934 1.45597 1.07769 1.06965 1.75354 1.22009 0.80181 0.97845 0.96765 0.90134 1.23156 0.98160 1.00820 0.97014 1.23008 0.97430 0.95420 0.92519 1.63618 1.30790 1.03622 1.26883 1.21610 0.90845 0.90406 1.02369 1.23111 0.96712 0.98280 0.91242 1.98405 1.82612 1.82608 1.39010 1.24566 1.00267 0.98379 0.89508 1.98395 1.83330 1.82000 1.39607 1.23180 0.89993 0.93484 1.01287 0.91386 0.86797 0.86649 0.74468 0.91896 0.90369 0.90640 0.90599 0.91428 0.86817 0.80752 0.90473 0.88359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.59 13.97 21.65 0.30 -55.29 16 2 C 0.04 2.61 5.50 84.86 0.47 3.07 16 3 Si 0.91 44.92 27.74 68.60 1.90 46.83 16 4 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.24 -11.63 6.74 99.48 0.67 -10.96 16 7 C -0.53 -30.46 10.04 67.95 0.68 -29.78 16 8 H 0.06 3.84 8.03 -2.91 -0.02 3.81 16 9 S -0.18 -8.83 18.55 -56.49 -1.05 -9.88 16 10 C -0.11 -4.01 6.16 71.24 0.44 -3.58 16 11 C 0.54 17.70 7.85 87.66 0.69 18.39 16 12 O -0.56 -23.37 15.61 -3.06 -0.05 -23.41 16 13 N -0.70 -15.28 5.23 -435.99 -2.28 -17.56 16 14 C 0.14 2.77 3.31 46.37 0.15 2.93 16 15 H 0.08 2.07 7.73 -2.38 -0.02 2.05 16 16 C -0.15 -2.94 6.64 31.77 0.21 -2.73 16 17 C 0.04 0.70 5.52 86.65 0.48 1.18 16 18 N -0.52 -7.57 5.15 -890.11 -4.58 -12.15 16 19 C 0.08 0.84 4.82 85.56 0.41 1.25 16 20 C -0.07 -0.73 6.00 25.36 0.15 -0.58 16 21 Cl -0.05 -0.67 25.93 -2.72 -0.07 -0.74 16 22 C -0.08 -0.75 10.54 67.49 0.71 -0.04 16 23 Cl -0.06 -0.65 26.97 -2.72 -0.07 -0.72 16 24 C 0.05 0.65 6.31 86.77 0.55 1.20 16 25 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 26 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 27 H 0.12 3.81 8.14 -2.39 -0.02 3.79 16 28 H 0.42 6.15 8.52 -92.71 -0.79 5.36 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.08 5.57 -2.39 -0.01 1.06 16 33 H 0.07 0.67 7.96 -2.39 -0.02 0.65 16 34 H 0.11 1.14 5.94 -2.39 -0.01 1.12 16 35 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 36 H 0.08 0.74 7.67 -2.39 -0.02 0.72 16 37 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -71.57 349.40 -0.68 -72.25 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 0.28 Total: 9.37 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: 4.94 Total: -8.68 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -6.56 Total: -85.01 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.05 Total: -23.41 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.90 Total: 46.83 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.05 Total: -9.88 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.14 Total: -1.46 kcal Total: -71.57 -0.68 -72.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660961555.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.515 kcal (2) G-P(sol) polarization free energy of solvation -71.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds