Wall clock time and date at job start Tue Mar 31 2020 21:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00194 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00241 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47595 * 179.97438 * 14 13 11 16 16 H 1.09000 * 112.74993 * 284.23281 * 15 14 13 17 17 C 1.53504 * 113.47929 * 153.37643 * 15 14 13 18 18 C 1.53515 * 83.57973 * 219.21491 * 17 15 14 19 19 N 1.47484 * 87.92973 * 26.02556 * 18 17 15 20 20 C 1.46896 * 110.99657 * 221.30071 * 19 18 17 21 21 C 1.50708 * 109.47081 * 265.97020 * 20 19 18 22 22 Cl 1.73599 * 119.99846 * 295.00290 * 21 20 19 23 23 C 1.31283 * 120.00073 * 115.00256 * 21 20 19 24 24 Cl 1.73599 * 120.00081 * 0.02562 * 23 21 20 25 25 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 27 27 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 28 28 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 29 29 H 1.09008 * 109.46975 * 299.99840 * 14 13 11 30 30 H 1.09007 * 109.47007 * 59.99239 * 14 13 11 31 31 H 1.09009 * 114.17504 * 332.86085 * 17 15 14 32 32 H 1.09003 * 114.17378 * 105.56917 * 17 15 14 33 33 H 1.09004 * 113.47167 * 271.25906 * 18 17 15 34 34 H 1.08995 * 113.53046 * 140.80264 * 18 17 15 35 35 H 1.08999 * 109.48074 * 25.97034 * 20 19 18 36 36 H 1.09005 * 109.47105 * 145.97600 * 20 19 18 37 37 H 1.07996 * 120.00628 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2124 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 6 3.5021 -8.6986 -0.0388 16 1 3.9839 -8.7751 -1.0135 17 6 3.1614 -10.0591 0.5850 18 6 4.5784 -9.9538 1.1663 19 7 4.4509 -8.4876 1.0706 20 6 5.6987 -7.8812 0.5879 21 6 6.5389 -7.4564 1.7647 22 17 5.9758 -6.2033 2.8260 23 6 7.6967 -8.0341 1.9873 24 17 8.2601 -9.2867 0.9256 25 1 -0.4849 0.8401 0.0004 26 1 3.1244 -3.7267 -0.9039 27 1 3.1244 -3.7361 0.8761 28 1 3.8007 -6.1835 -0.0260 29 1 1.7212 -7.8796 0.8553 30 1 1.7219 -7.8705 -0.9248 31 1 2.3686 -10.0217 1.3322 32 1 3.0351 -10.8634 -0.1398 33 1 5.3474 -10.3664 0.5132 34 1 4.6565 -10.3169 2.1910 35 1 6.2497 -8.6087 -0.0081 36 1 5.4661 -7.0106 -0.0255 37 1 8.2986 -7.7301 2.8308 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670606489.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:09 Heat of formation + Delta-G solvation = 5.262635 kcal Electronic energy + Delta-G solvation = -21941.675634 eV Core-core repulsion = 18319.782961 eV Total energy + Delta-G solvation = -3621.892673 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.89749 -38.82771 -37.65482 -36.92765 -34.39175 -33.91019 -32.39835 -30.37277 -29.74623 -27.54303 -25.44661 -25.02407 -23.27855 -20.70850 -20.34514 -19.97930 -17.85826 -17.31501 -16.66584 -16.31533 -16.07256 -15.57778 -15.08541 -14.81167 -14.77935 -14.34676 -13.86590 -13.72181 -13.28868 -13.21311 -13.03587 -12.58533 -12.44489 -12.22573 -12.01791 -11.82530 -11.63903 -11.55324 -11.50085 -11.05118 -10.98608 -10.94305 -10.91904 -10.71378 -9.77453 -9.46989 -9.31874 -9.25269 -9.04863 -8.78078 -8.18972 -6.45924 -6.18968 -3.88706 1.05508 1.16263 2.40282 3.04705 3.18414 3.23377 3.28876 3.33166 3.46616 3.77907 3.96726 4.14131 4.23208 4.38626 4.53258 4.77884 4.81791 4.89555 4.95673 5.16224 5.17544 5.22726 5.28615 5.32156 5.40827 5.54573 5.65927 5.73796 5.86003 5.91889 5.95935 6.19340 6.54176 6.70060 7.62854 7.77313 8.38487 8.69195 9.26559 10.88545 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.014304 B = 0.002818 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.064917 B = 9933.669355 C =11410.874421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.519 6.519 13 N -0.732 5.732 14 C 0.140 3.860 15 C 0.015 3.985 16 H 0.086 0.914 17 C -0.133 4.133 18 C -0.003 4.003 19 N -0.453 5.453 20 C 0.038 3.962 21 C -0.043 4.043 22 Cl -0.032 7.032 23 C -0.105 4.105 24 Cl -0.068 7.068 25 H 0.267 0.733 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.393 0.607 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.132 -23.175 1.913 28.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.303 4.303 11 C 0.318 3.682 12 O -0.393 6.393 13 N -0.387 5.387 14 C 0.016 3.984 15 C -0.095 4.095 16 H 0.104 0.896 17 C -0.171 4.171 18 C -0.131 4.131 19 N -0.175 5.175 20 C -0.090 4.090 21 C -0.071 4.071 22 Cl -0.003 7.003 23 C -0.151 4.151 24 Cl -0.040 7.040 25 H 0.077 0.923 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.227 0.773 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 14.787 -22.972 2.487 27.433 hybrid contribution 2.948 1.071 -0.623 3.198 sum 17.735 -21.901 1.864 28.243 Atomic orbital electron populations 1.70035 1.05932 1.27276 1.47073 1.24992 0.95020 0.98999 0.94609 0.86127 0.79608 0.81949 0.77880 1.19625 1.20582 1.20582 1.22914 0.94935 0.91692 1.58654 0.90929 1.85379 1.04987 0.96268 1.96683 1.23520 1.06487 0.95558 1.04768 1.20263 0.86504 0.86246 0.75159 1.90695 1.15320 1.85598 1.47726 1.45894 1.09696 1.05373 1.77711 1.21227 0.94381 0.80198 1.02613 1.23747 0.94849 0.96038 0.94827 0.89596 1.23169 0.97651 0.95733 1.00553 1.23873 0.97268 0.89329 1.02665 1.69016 1.06862 1.10617 1.31030 1.22096 0.92288 1.01478 0.93146 1.23056 0.94941 0.93687 0.95423 1.98453 1.88919 1.49333 1.63588 1.24386 0.97666 0.94473 0.98618 1.98370 1.88634 1.51720 1.65243 0.92280 0.89467 0.89310 0.77277 0.90847 0.91177 0.88120 0.90017 0.91014 0.89325 0.90016 0.88864 0.82280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.43 13.22 55.49 0.73 -25.70 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.65 29.55 -169.99 -5.02 16.63 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -15.41 9.50 30.94 0.29 -15.12 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.59 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.18 6.16 36.00 0.22 -2.96 16 11 C 0.53 10.25 7.85 -10.99 -0.09 10.16 16 12 O -0.52 -12.02 15.86 5.56 0.09 -11.93 16 13 N -0.73 -10.20 5.46 -60.29 -0.33 -10.53 16 14 C 0.14 1.62 5.81 -4.04 -0.02 1.60 16 15 C 0.01 0.12 3.23 -71.43 -0.23 -0.11 16 16 H 0.09 0.58 7.91 -51.93 -0.41 0.17 16 17 C -0.13 -0.83 8.00 -26.20 -0.21 -1.04 16 18 C 0.00 -0.02 7.71 -7.54 -0.06 -0.07 16 19 N -0.45 -3.78 5.88 -237.92 -1.40 -5.18 16 20 C 0.04 0.30 4.74 -4.97 -0.02 0.27 16 21 C -0.04 -0.35 6.09 -36.09 -0.22 -0.57 16 22 Cl -0.03 -0.33 28.99 -51.86 -1.50 -1.83 16 23 C -0.10 -0.72 10.54 28.94 0.31 -0.42 16 24 Cl -0.07 -0.44 26.97 -51.86 -1.40 -1.84 16 25 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 27 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 28 H 0.39 4.66 6.22 -40.82 -0.25 4.41 16 29 H 0.07 0.95 7.88 -51.92 -0.41 0.54 16 30 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 31 H 0.10 0.69 7.94 -51.92 -0.41 0.28 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.40 7.42 -51.93 -0.39 0.01 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.54 5.17 -51.93 -0.27 0.27 16 36 H 0.09 0.74 6.27 -51.93 -0.33 0.41 16 37 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 356.63 15.07 5.37 5.37 Total: -1.00 -34.31 356.63 -10.34 -44.65 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -4.55 Total: 0.48 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -0.13 Total: -6.26 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: -1.00 Total: -41.41 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -2.90 Total: -3.67 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.31 -10.34 -44.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670606489.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.916 kcal (2) G-P(sol) polarization free energy of solvation -34.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds