Wall clock time and date at job start Tue Mar 31 2020 21:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00194 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00241 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47595 * 179.97438 * 14 13 11 16 16 H 1.09000 * 112.74993 * 284.23281 * 15 14 13 17 17 C 1.53504 * 113.47929 * 153.37643 * 15 14 13 18 18 C 1.53515 * 83.57973 * 219.21491 * 17 15 14 19 19 N 1.47484 * 87.92973 * 26.02556 * 18 17 15 20 20 C 1.46896 * 110.99657 * 221.30071 * 19 18 17 21 21 C 1.50708 * 109.47081 * 265.97020 * 20 19 18 22 22 Cl 1.73599 * 119.99846 * 295.00290 * 21 20 19 23 23 C 1.31283 * 120.00073 * 115.00256 * 21 20 19 24 24 Cl 1.73599 * 120.00081 * 0.02562 * 23 21 20 25 25 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 27 27 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 28 28 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 29 29 H 1.09008 * 109.46975 * 299.99840 * 14 13 11 30 30 H 1.09007 * 109.47007 * 59.99239 * 14 13 11 31 31 H 1.09009 * 114.17504 * 332.86085 * 17 15 14 32 32 H 1.09003 * 114.17378 * 105.56917 * 17 15 14 33 33 H 1.09004 * 113.47167 * 271.25906 * 18 17 15 34 34 H 1.08995 * 113.53046 * 140.80264 * 18 17 15 35 35 H 1.08999 * 109.48074 * 25.97034 * 20 19 18 36 36 H 1.09005 * 109.47105 * 145.97600 * 20 19 18 37 37 H 1.07996 * 120.00628 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2124 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 6 3.5021 -8.6986 -0.0388 16 1 3.9839 -8.7751 -1.0135 17 6 3.1614 -10.0591 0.5850 18 6 4.5784 -9.9538 1.1663 19 7 4.4509 -8.4876 1.0706 20 6 5.6987 -7.8812 0.5879 21 6 6.5389 -7.4564 1.7647 22 17 5.9758 -6.2033 2.8260 23 6 7.6967 -8.0341 1.9873 24 17 8.2601 -9.2867 0.9256 25 1 -0.4849 0.8401 0.0004 26 1 3.1244 -3.7267 -0.9039 27 1 3.1244 -3.7361 0.8761 28 1 3.8007 -6.1835 -0.0260 29 1 1.7212 -7.8796 0.8553 30 1 1.7219 -7.8705 -0.9248 31 1 2.3686 -10.0217 1.3322 32 1 3.0351 -10.8634 -0.1398 33 1 5.3474 -10.3664 0.5132 34 1 4.6565 -10.3169 2.1910 35 1 6.2497 -8.6087 -0.0081 36 1 5.4661 -7.0106 -0.0255 37 1 8.2986 -7.7301 2.8308 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670606489.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:08 Heat of formation + Delta-G solvation = -19.487723 kcal Electronic energy + Delta-G solvation = -21942.748890 eV Core-core repulsion = 18319.782961 eV Total energy + Delta-G solvation = -3622.965929 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.58270 -40.26858 -38.26099 -37.56287 -35.60789 -34.61283 -34.58146 -31.59563 -30.59032 -28.65506 -27.62157 -25.58406 -24.08575 -21.82142 -21.22468 -20.66824 -19.81858 -17.97223 -17.85880 -17.38601 -17.09607 -16.88431 -16.49083 -16.28677 -15.82974 -15.55137 -15.03050 -14.68777 -14.57423 -14.37787 -13.93005 -13.87720 -13.53468 -13.16230 -12.97994 -12.89578 -12.82914 -12.62119 -12.59875 -12.40641 -12.18151 -12.08141 -11.74530 -11.58604 -11.55193 -11.16005 -10.91882 -10.27971 -10.09049 -9.99270 -9.85677 -8.66556 -8.34969 -6.12740 0.47246 0.55611 1.26752 1.40900 1.46558 1.58002 1.63180 1.81318 2.24487 2.28665 2.89250 2.99107 3.31523 3.39211 3.58883 3.79184 3.84830 4.04428 4.10544 4.24490 4.27818 4.37910 4.39972 4.48466 4.59818 4.65489 4.75011 4.81294 4.89362 5.02489 5.20257 5.23849 5.41830 5.49055 5.97549 6.19942 6.47694 7.06384 7.24415 8.74587 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.014304 B = 0.002818 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.064917 B = 9933.669355 C =11410.874421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.081 0.919 9 S -0.147 6.147 10 C -0.129 4.129 11 C 0.533 3.467 12 O -0.565 6.565 13 N -0.707 5.707 14 C 0.138 3.862 15 C 0.021 3.979 16 H 0.107 0.893 17 C -0.125 4.125 18 C 0.003 3.997 19 N -0.475 5.475 20 C 0.039 3.961 21 C -0.056 4.056 22 Cl -0.057 7.057 23 C -0.091 4.091 24 Cl -0.060 7.060 25 H 0.271 0.729 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.406 0.594 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.874 -24.190 1.460 31.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.694 4.694 8 H 0.099 0.901 9 S 0.080 5.920 10 C -0.281 4.281 11 C 0.319 3.681 12 O -0.443 6.443 13 N -0.360 5.360 14 C 0.014 3.986 15 C -0.088 4.088 16 H 0.124 0.876 17 C -0.163 4.163 18 C -0.125 4.125 19 N -0.197 5.197 20 C -0.089 4.089 21 C -0.085 4.085 22 Cl -0.029 7.029 23 C -0.138 4.138 24 Cl -0.031 7.031 25 H 0.080 0.920 26 H 0.126 0.874 27 H 0.120 0.880 28 H 0.243 0.757 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.122 0.878 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 17.583 -24.034 2.034 29.849 hybrid contribution 2.181 1.212 -0.476 2.540 sum 19.763 -22.822 1.559 30.230 Atomic orbital electron populations 1.70192 1.07942 1.28541 1.48062 1.26127 0.95980 1.03280 0.93742 0.84910 0.78582 0.76343 0.78140 1.18108 1.19766 1.19921 1.23228 0.95288 0.92052 1.58785 0.90094 1.85536 1.10339 0.99074 1.97007 1.23357 1.03592 0.94793 1.06319 1.20010 0.86257 0.86619 0.75239 1.90682 1.17223 1.86072 1.50354 1.45687 1.09765 1.05363 1.75186 1.21421 0.96116 0.79252 1.01838 1.23757 0.93622 0.95533 0.95925 0.87572 1.23150 0.97359 0.95194 1.00559 1.23874 0.97673 0.88043 1.02926 1.68997 1.07354 1.12070 1.31321 1.22122 0.92178 1.01621 0.92972 1.23086 0.95723 0.93930 0.95731 1.98445 1.89270 1.50633 1.64512 1.24548 0.97118 0.93641 0.98461 1.98378 1.88436 1.51282 1.65044 0.91974 0.87434 0.87975 0.75720 0.92418 0.91247 0.89026 0.87843 0.89533 0.89586 0.88644 0.89245 0.81115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.57 13.22 21.65 0.29 -56.28 16 2 C 0.01 0.77 5.49 84.86 0.47 1.24 16 3 Si 1.00 44.19 29.55 68.60 2.03 46.22 16 4 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.55 -31.73 9.50 67.96 0.65 -31.09 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.33 20.57 -56.49 -1.16 -9.49 16 10 C -0.13 -5.37 6.16 71.23 0.44 -4.93 16 11 C 0.53 20.54 7.85 87.66 0.69 21.23 16 12 O -0.56 -26.87 15.86 -3.02 -0.05 -26.91 16 13 N -0.71 -18.98 5.46 -463.06 -2.53 -21.51 16 14 C 0.14 3.05 5.81 86.38 0.50 3.55 16 15 C 0.02 0.28 3.23 42.19 0.14 0.42 16 16 H 0.11 1.06 7.91 -2.39 -0.02 1.04 16 17 C -0.12 -1.26 8.00 30.94 0.25 -1.01 16 18 C 0.00 0.03 7.71 83.58 0.64 0.68 16 19 N -0.47 -6.96 5.88 -906.64 -5.33 -12.29 16 20 C 0.04 0.52 4.74 85.56 0.41 0.92 16 21 C -0.06 -0.83 6.09 25.37 0.15 -0.67 16 22 Cl -0.06 -1.13 28.99 -2.72 -0.08 -1.21 16 23 C -0.09 -1.06 10.54 67.50 0.71 -0.35 16 24 Cl -0.06 -0.63 26.97 -2.72 -0.07 -0.70 16 25 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 26 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 27 H 0.10 3.96 8.14 -2.39 -0.02 3.94 16 28 H 0.41 8.94 6.22 -92.71 -0.58 8.36 16 29 H 0.06 1.49 7.88 -2.38 -0.02 1.47 16 30 H 0.07 1.58 8.14 -2.38 -0.02 1.57 16 31 H 0.09 1.13 7.94 -2.38 -0.02 1.11 16 32 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 0.65 7.42 -2.38 -0.02 0.63 16 34 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.10 0.97 5.17 -2.39 -0.01 0.96 16 36 H 0.09 1.21 6.27 -2.38 -0.01 1.20 16 37 H 0.17 1.56 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -76.26 356.63 -1.34 -77.61 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.53 Total: 14.58 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 5.04 Total: -10.01 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -7.58 Total: -90.08 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.05 Total: -26.91 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.49 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -0.15 Total: -1.91 kcal Total: -76.26 -1.34 -77.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670606489.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.121 kcal (2) G-P(sol) polarization free energy of solvation -76.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds