Wall clock time and date at job start Tue Mar 31 2020 21:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86798 * 119.99975 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99921 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99671 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99382 * 3 2 1 7 7 C 1.38798 * 119.99397 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00429 * 0.02562 * 7 2 1 9 9 S 1.76209 * 119.99599 * 180.02562 * 7 2 1 10 10 C 1.81000 * 99.99875 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47038 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99654 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99768 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99561 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47105 * 180.02562 * 14 13 11 16 16 H 1.08995 * 112.95767 * 72.85357 * 15 14 13 17 17 C 1.53931 * 113.76286 * 204.50917 * 15 14 13 18 18 C 1.53931 * 86.34482 * 138.03469 * 17 15 14 19 19 N 1.47961 * 86.18200 * 336.27893 * 18 17 15 20 20 C 1.46900 * 111.00138 * 137.58106 * 19 18 17 21 21 C 1.50699 * 109.47129 * 70.64140 * 20 19 18 22 22 Cl 1.73600 * 119.99779 * 295.00061 * 21 20 19 23 23 C 1.31292 * 120.00086 * 115.00087 * 21 20 19 24 24 Cl 1.73596 * 120.00117 * 179.97438 * 23 21 20 25 25 H 0.97005 * 119.99723 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47385 * 299.99956 * 10 9 7 27 27 H 1.09005 * 109.47046 * 60.00118 * 10 9 7 28 28 H 0.96993 * 120.00373 * 0.02562 * 13 11 10 29 29 H 1.09000 * 109.47217 * 300.00298 * 14 13 11 30 30 H 1.09005 * 109.47093 * 60.00385 * 14 13 11 31 31 H 1.09000 * 113.73631 * 252.39619 * 17 15 14 32 32 H 1.09006 * 113.73034 * 23.67693 * 17 15 14 33 33 H 1.09006 * 113.75738 * 90.59810 * 18 17 15 34 34 H 1.09004 * 113.76488 * 221.85144 * 18 17 15 35 35 H 1.08995 * 109.47085 * 190.64564 * 20 19 18 36 36 H 1.09002 * 109.47066 * 310.64315 * 20 19 18 37 37 H 1.07998 * 119.99674 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 1.4000 5 1 3.5479 1.4400 -0.7000 6 1 1.4479 2.6526 -0.7002 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2022 0.0012 10 6 4.0865 -2.9847 0.0009 11 6 5.5730 -3.2327 0.0008 12 8 6.3439 -2.2965 0.0014 13 7 6.0455 -4.4949 0.0011 14 6 7.4906 -4.7360 0.0016 15 6 7.7562 -6.2427 0.0012 16 1 7.5390 -6.7125 -0.9580 17 6 9.1261 -6.6312 0.5860 18 6 8.3879 -7.7829 1.2919 19 7 7.1710 -6.9515 1.1608 20 6 6.0184 -7.7659 0.7532 21 6 5.6029 -8.6561 1.8960 22 17 6.6750 -9.8983 2.4627 23 6 4.4302 -8.4921 2.4630 24 17 3.9513 -9.5179 3.7791 25 1 -0.4850 0.8401 -0.0004 26 1 3.6432 -3.4319 0.8906 27 1 3.6439 -3.4315 -0.8894 28 1 5.4289 -5.2436 0.0011 29 1 7.9338 -4.2891 -0.8883 30 1 7.9332 -4.2889 0.8917 31 1 9.8444 -6.9643 -0.1630 32 1 9.5373 -5.8890 1.2704 33 1 8.3548 -8.7046 0.7110 34 1 8.7048 -7.9412 2.3228 35 1 5.1895 -7.1123 0.4818 36 1 6.2927 -8.3801 -0.1046 37 1 3.7634 -7.7190 2.1107 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670606490.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:12 Heat of formation + Delta-G solvation = -24.399971 kcal Electronic energy + Delta-G solvation = -21733.788403 eV Core-core repulsion = 18110.609464 eV Total energy + Delta-G solvation = -3623.178940 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.41217 -40.26967 -38.19267 -37.36375 -35.64432 -34.75182 -34.65710 -31.64608 -30.42275 -28.69745 -27.80940 -25.38485 -24.28646 -21.88572 -21.22726 -20.65780 -19.84800 -18.02959 -17.78815 -17.40083 -17.06826 -16.92009 -16.49189 -16.37976 -15.77009 -15.61878 -15.02566 -14.90061 -14.60355 -14.25543 -14.14133 -13.72973 -13.60982 -13.33505 -13.08718 -12.96892 -12.71422 -12.67933 -12.60173 -12.41866 -12.29171 -11.89602 -11.84800 -11.73155 -11.42177 -11.16109 -10.95530 -10.51633 -10.11673 -10.01662 -9.76788 -8.97907 -8.50637 -6.20954 0.49700 0.90379 1.00661 1.32471 1.37602 1.47968 1.57127 1.60766 2.21665 2.26774 2.71323 2.87901 2.88935 3.44863 3.69715 3.73724 3.87782 4.09735 4.10205 4.24162 4.31390 4.36199 4.40224 4.47769 4.58656 4.63032 4.80381 4.84864 4.90355 5.01935 5.20070 5.26229 5.46405 5.71789 5.96581 6.12522 6.47683 6.94946 7.22158 8.61703 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.013521 B = 0.002652 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.302093 B =10557.003464 C =12377.233694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.046 3.954 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.236 1.236 6 H -0.260 1.260 7 C -0.527 4.527 8 H 0.063 0.937 9 S -0.177 6.177 10 C -0.111 4.111 11 C 0.534 3.466 12 O -0.564 6.564 13 N -0.705 5.705 14 C 0.141 3.859 15 C 0.027 3.973 16 H 0.111 0.889 17 C -0.129 4.129 18 C 0.006 3.994 19 N -0.485 5.485 20 C 0.060 3.940 21 C -0.063 4.063 22 Cl -0.068 7.068 23 C -0.092 4.092 24 Cl -0.082 7.082 25 H 0.277 0.723 26 H 0.111 0.889 27 H 0.115 0.885 28 H 0.410 0.590 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.231 -24.172 0.929 29.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.160 4.160 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.160 1.160 6 H -0.184 1.184 7 C -0.675 4.675 8 H 0.081 0.919 9 S 0.050 5.950 10 C -0.262 4.262 11 C 0.319 3.681 12 O -0.442 6.442 13 N -0.359 5.359 14 C 0.017 3.983 15 C -0.082 4.082 16 H 0.129 0.871 17 C -0.168 4.168 18 C -0.122 4.122 19 N -0.209 5.209 20 C -0.068 4.068 21 C -0.091 4.091 22 Cl -0.039 7.039 23 C -0.138 4.138 24 Cl -0.054 7.054 25 H 0.086 0.914 26 H 0.130 0.870 27 H 0.133 0.867 28 H 0.246 0.754 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.127 0.873 36 H 0.103 0.897 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 18.141 -22.387 1.642 28.861 hybrid contribution -1.455 -1.291 -0.267 1.963 sum 16.687 -23.678 1.374 29.000 Atomic orbital electron populations 1.70019 1.07297 1.28988 1.49259 1.25553 0.95251 1.02228 0.92943 0.85880 0.80739 0.79681 0.80170 1.18820 1.15965 1.18413 1.22465 0.90268 0.96672 1.58091 0.91862 1.84744 1.06377 1.06332 1.97572 1.23270 0.96029 0.99548 1.07354 1.19943 0.89341 0.83438 0.75365 1.90693 1.59319 1.43834 1.50373 1.45629 1.08752 1.06398 1.75090 1.21349 0.79988 0.94928 1.02006 1.23791 0.96257 0.93142 0.94994 0.87096 1.23351 0.95235 0.98018 1.00169 1.23960 0.89946 0.95947 1.02330 1.68720 1.02462 1.18723 1.30974 1.21865 0.97390 0.94716 0.92866 1.23461 0.91803 0.94133 0.99683 1.98393 1.65373 1.51874 1.88306 1.24943 0.97908 0.98535 0.92443 1.98396 1.92011 1.67314 1.47649 0.91401 0.87045 0.86723 0.75360 0.90927 0.92356 0.88406 0.89287 0.89624 0.89757 0.87304 0.89687 0.79703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.58 13.97 21.65 0.30 -55.28 16 2 C 0.05 2.66 5.50 84.86 0.47 3.12 16 3 Si 0.91 44.79 27.74 68.60 1.90 46.69 16 4 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.24 -11.51 6.74 99.48 0.67 -10.84 16 6 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.53 -30.34 10.04 67.95 0.68 -29.66 16 8 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 9 S -0.18 -8.81 18.55 -56.49 -1.05 -9.86 16 10 C -0.11 -4.02 6.16 71.24 0.44 -3.58 16 11 C 0.53 17.56 7.85 87.66 0.69 18.24 16 12 O -0.56 -23.51 15.86 -3.04 -0.05 -23.55 16 13 N -0.71 -15.19 5.50 -463.05 -2.55 -17.74 16 14 C 0.14 2.56 5.80 86.38 0.50 3.06 16 15 C 0.03 0.29 3.41 45.01 0.15 0.44 16 16 H 0.11 0.75 7.80 -2.39 -0.02 0.73 16 17 C -0.13 -1.15 7.84 31.24 0.24 -0.91 16 18 C 0.01 0.06 5.94 86.40 0.51 0.58 16 19 N -0.49 -5.92 5.94 -888.34 -5.27 -11.19 16 20 C 0.06 0.58 5.01 85.56 0.43 1.00 16 21 C -0.06 -0.81 6.01 25.36 0.15 -0.65 16 22 Cl -0.07 -0.97 25.33 -2.72 -0.07 -1.04 16 23 C -0.09 -1.26 10.43 67.49 0.70 -0.56 16 24 Cl -0.08 -1.40 27.92 -2.72 -0.08 -1.48 16 25 H 0.28 15.50 8.31 -92.70 -0.77 14.73 16 26 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 27 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 28 H 0.41 6.35 6.59 -92.71 -0.61 5.74 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.29 7.91 -2.38 -0.02 1.27 16 31 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.09 0.98 7.94 -2.38 -0.02 0.96 16 33 H 0.09 0.68 7.31 -2.38 -0.02 0.66 16 34 H 0.08 1.02 8.02 -2.38 -0.02 1.01 16 35 H 0.11 0.82 6.21 -2.39 -0.01 0.81 16 36 H 0.09 0.55 7.69 -2.39 -0.02 0.54 16 37 H 0.19 1.87 7.85 -2.91 -0.02 1.84 16 Total: -1.00 -73.63 351.96 -1.43 -75.06 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 0.45 Total: 7.30 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: 4.97 Total: -8.91 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -7.52 Total: -84.21 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.05 Total: -23.55 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.90 Total: 46.69 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.05 Total: -9.86 kcal Atomic # 17 Polarization: -2.38 SS G_CDS: -0.14 Total: -2.52 kcal Total: -73.63 -1.43 -75.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670606490.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.660 kcal (2) G-P(sol) polarization free energy of solvation -73.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds