Wall clock time and date at job start Tue Mar 31 2020 21:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86801 * 119.99300 * 2 1 4 4 H 1.48499 * 109.47211 * 269.99805 * 3 2 1 5 5 H 1.48501 * 109.47545 * 29.99746 * 3 2 1 6 6 H 1.48504 * 109.47142 * 149.99748 * 3 2 1 7 7 C 1.38796 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00229 * 0.02562 * 7 2 1 9 9 S 1.76198 * 119.99666 * 180.02562 * 7 2 1 10 10 C 1.81001 * 99.99842 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46995 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00489 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00050 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00073 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47207 * 180.02562 * 14 13 11 16 16 H 1.09000 * 112.74865 * 75.77250 * 15 14 13 17 17 C 1.53512 * 113.53051 * 206.59640 * 15 14 13 18 18 C 1.53511 * 83.57597 * 140.79846 * 17 15 14 19 19 N 1.47481 * 87.93183 * 333.97269 * 18 17 15 20 20 C 1.46908 * 110.99818 * 138.70321 * 19 18 17 21 21 C 1.50701 * 109.46891 * 74.03189 * 20 19 18 22 22 Cl 1.73599 * 119.99856 * 294.99436 * 21 20 19 23 23 C 1.31294 * 119.99652 * 115.27611 * 21 20 19 24 24 Cl 1.73598 * 120.00100 * 359.72202 * 23 21 20 25 25 H 0.96998 * 120.00541 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47324 * 60.00147 * 10 9 7 27 27 H 1.08999 * 109.47191 * 299.99579 * 10 9 7 28 28 H 0.97003 * 119.99828 * 0.02562 * 13 11 10 29 29 H 1.09007 * 109.47032 * 60.00716 * 14 13 11 30 30 H 1.08994 * 109.47655 * 300.00659 * 14 13 11 31 31 H 1.09004 * 114.17125 * 254.44191 * 17 15 14 32 32 H 1.08997 * 114.17230 * 26.96061 * 17 15 14 33 33 H 1.08998 * 113.47833 * 219.20927 * 18 17 15 34 34 H 1.09001 * 113.47685 * 88.73974 * 18 17 15 35 35 H 1.09000 * 109.46841 * 314.02544 * 20 19 18 36 36 H 1.09005 * 109.46746 * 194.03203 * 20 19 18 37 37 H 1.08004 * 119.99566 * 179.72139 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4405 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4705 -2.1372 0.0005 9 16 3.7723 -1.2018 0.0012 10 6 4.0868 -2.9843 0.0009 11 6 5.5733 -3.2321 0.0008 12 8 6.3442 -2.2958 0.0014 13 7 6.0461 -4.4942 0.0011 14 6 7.4911 -4.7352 0.0005 15 6 7.7569 -6.2419 0.0004 16 1 7.5864 -6.6999 -0.9739 17 6 9.1031 -6.6268 0.6298 18 6 8.3004 -7.7994 1.2106 19 7 7.0954 -6.9552 1.1088 20 6 5.9474 -7.7329 0.6236 21 6 5.4496 -8.6338 1.7244 22 17 6.4595 -9.9129 2.3225 23 6 4.2501 -8.4547 2.2272 24 17 3.2402 -7.1757 1.6290 25 1 -0.4851 0.8400 -0.0004 26 1 3.6443 -3.4311 -0.8893 27 1 3.6436 -3.4315 0.8907 28 1 5.4295 -5.2431 0.0011 29 1 7.9344 -4.2877 0.8901 30 1 7.9336 -4.2884 -0.8898 31 1 9.8652 -6.9215 -0.0916 32 1 9.4664 -5.9185 1.3744 33 1 8.5725 -8.0458 2.2369 34 1 8.2749 -8.6730 0.5592 35 1 6.2529 -8.3373 -0.2305 36 1 5.1501 -7.0537 0.3214 37 1 3.8917 -9.1032 3.0130 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670606491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:16 Heat of formation + Delta-G solvation = 5.917340 kcal Electronic energy + Delta-G solvation = -22088.545000 eV Core-core repulsion = 18466.680718 eV Total energy + Delta-G solvation = -3621.864283 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.94036 -38.96593 -37.66227 -36.97703 -34.46810 -33.97259 -32.41671 -30.47396 -29.79171 -27.62752 -25.58635 -25.01964 -23.40876 -20.71772 -20.40370 -20.05905 -17.93086 -17.42803 -16.54836 -16.35499 -16.16603 -15.78838 -15.19355 -14.97911 -14.80455 -14.22079 -13.82518 -13.59689 -13.44400 -13.25314 -13.09891 -12.77694 -12.64866 -12.23859 -12.11787 -11.99857 -11.88011 -11.77102 -11.26515 -11.19218 -11.08892 -10.98834 -10.70542 -10.54850 -9.83634 -9.56608 -9.43637 -9.24659 -8.98963 -8.88953 -8.47346 -6.88857 -6.26783 -3.98109 1.04037 1.14548 2.37476 2.78603 3.03418 3.26627 3.34901 3.50512 3.52947 3.71243 3.86321 4.14429 4.31474 4.35351 4.59725 4.71739 4.78196 4.80580 4.87132 4.93983 5.12309 5.18832 5.27449 5.33424 5.35165 5.41149 5.53236 5.69837 5.77281 5.81547 5.84386 6.03891 6.51382 6.58724 7.64582 7.96316 8.43765 8.54225 9.19498 10.82510 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.016163 B = 0.002973 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.982664 B = 9416.069277 C =10970.181154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.087 0.913 9 S -0.140 6.140 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.520 6.520 13 N -0.731 5.731 14 C 0.140 3.860 15 C 0.014 3.986 16 H 0.087 0.913 17 C -0.134 4.134 18 C -0.002 4.002 19 N -0.454 5.454 20 C 0.044 3.956 21 C -0.061 4.061 22 Cl -0.055 7.055 23 C -0.086 4.086 24 Cl -0.045 7.045 25 H 0.270 0.730 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.394 0.606 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.690 -23.791 2.155 28.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.105 0.895 9 S 0.087 5.913 10 C -0.274 4.274 11 C 0.317 3.683 12 O -0.395 6.395 13 N -0.385 5.385 14 C 0.015 3.985 15 C -0.096 4.096 16 H 0.105 0.895 17 C -0.172 4.172 18 C -0.131 4.131 19 N -0.176 5.176 20 C -0.085 4.085 21 C -0.089 4.089 22 Cl -0.026 7.026 23 C -0.132 4.132 24 Cl -0.017 7.017 25 H 0.080 0.920 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.228 0.772 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.124 0.876 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 16.523 -21.763 2.731 27.461 hybrid contribution -1.075 -1.397 -0.655 1.880 sum 15.448 -23.160 2.076 27.916 Atomic orbital electron populations 1.69939 1.05919 1.27741 1.48179 1.24709 0.94443 0.98951 0.93192 0.86737 0.81943 0.83276 0.79917 1.19224 1.19960 1.15866 1.22317 0.88338 0.97502 1.58667 0.89465 1.84764 1.09175 1.00006 1.97404 1.23270 0.94217 1.04388 1.05574 1.20238 0.90514 0.82295 0.75288 1.90694 1.58735 1.42141 1.47902 1.45883 1.07358 1.07832 1.77456 1.21253 0.81885 0.92618 1.02696 1.23779 0.95232 0.95712 0.94871 0.89517 1.23193 0.95198 0.98320 1.00535 1.23855 0.90794 0.95641 1.02831 1.69160 1.01401 1.16406 1.30682 1.22052 0.97527 0.95404 0.93497 1.22915 0.92636 0.93596 0.99747 1.98393 1.68369 1.48689 1.87176 1.24467 0.92719 0.95060 1.00998 1.98443 1.67200 1.49118 1.86894 0.91966 0.88779 0.88637 0.77167 0.90755 0.91053 0.90021 0.88174 0.89144 0.90926 0.91560 0.87602 0.82314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.83 13.97 55.49 0.78 -26.05 16 2 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 3 Si 0.86 22.01 27.74 -169.99 -4.72 17.30 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.23 -6.03 6.74 56.52 0.38 -5.65 16 7 C -0.52 -15.19 10.04 30.94 0.31 -14.88 16 8 H 0.09 2.66 8.03 -52.49 -0.42 2.23 16 9 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 10 C -0.12 -2.48 6.16 36.01 0.22 -2.26 16 11 C 0.53 9.76 7.85 -10.98 -0.09 9.67 16 12 O -0.52 -11.43 15.86 5.56 0.09 -11.34 16 13 N -0.73 -9.84 5.46 -60.29 -0.33 -10.17 16 14 C 0.14 1.56 5.82 -4.04 -0.02 1.53 16 15 C 0.01 0.10 3.25 -71.43 -0.23 -0.13 16 16 H 0.09 0.57 7.77 -51.93 -0.40 0.16 16 17 C -0.13 -0.82 8.00 -26.20 -0.21 -1.03 16 18 C 0.00 -0.02 5.79 -7.55 -0.04 -0.06 16 19 N -0.45 -3.80 5.97 -237.93 -1.42 -5.22 16 20 C 0.04 0.34 4.82 -4.97 -0.02 0.32 16 21 C -0.06 -0.48 6.03 -36.10 -0.22 -0.69 16 22 Cl -0.05 -0.39 26.85 -51.86 -1.39 -1.78 16 23 C -0.09 -0.68 10.54 28.94 0.31 -0.38 16 24 Cl -0.04 -0.45 26.97 -51.86 -1.40 -1.85 16 25 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 26 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 27 H 0.10 1.83 8.14 -51.92 -0.42 1.41 16 28 H 0.39 4.58 6.22 -40.82 -0.25 4.33 16 29 H 0.07 0.92 7.88 -51.92 -0.41 0.51 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.67 7.94 -51.93 -0.41 0.25 16 33 H 0.09 0.62 7.96 -51.93 -0.41 0.21 16 34 H 0.07 0.41 7.51 -51.93 -0.39 0.02 16 35 H 0.07 0.43 7.56 -51.93 -0.39 0.04 16 36 H 0.11 0.90 4.19 -51.93 -0.22 0.69 16 37 H 0.16 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 350.11 15.07 5.28 5.28 Total: -1.00 -33.88 350.11 -9.79 -43.66 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -4.58 Total: 0.97 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -0.10 Total: -5.19 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: -0.98 Total: -41.45 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.72 Total: 17.30 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -2.79 Total: -3.63 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.88 -9.79 -43.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670606491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.582 kcal (2) G-P(sol) polarization free energy of solvation -33.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds