Wall clock time and date at job start Tue Mar 31 2020 21:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86801 * 119.99300 * 2 1 4 4 H 1.48499 * 109.47211 * 269.99805 * 3 2 1 5 5 H 1.48501 * 109.47545 * 29.99746 * 3 2 1 6 6 H 1.48504 * 109.47142 * 149.99748 * 3 2 1 7 7 C 1.38796 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00229 * 0.02562 * 7 2 1 9 9 S 1.76198 * 119.99666 * 180.02562 * 7 2 1 10 10 C 1.81001 * 99.99842 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46995 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00489 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00050 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00073 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47207 * 180.02562 * 14 13 11 16 16 H 1.09000 * 112.74865 * 75.77250 * 15 14 13 17 17 C 1.53512 * 113.53051 * 206.59640 * 15 14 13 18 18 C 1.53511 * 83.57597 * 140.79846 * 17 15 14 19 19 N 1.47481 * 87.93183 * 333.97269 * 18 17 15 20 20 C 1.46908 * 110.99818 * 138.70321 * 19 18 17 21 21 C 1.50701 * 109.46891 * 74.03189 * 20 19 18 22 22 Cl 1.73599 * 119.99856 * 294.99436 * 21 20 19 23 23 C 1.31294 * 119.99652 * 115.27611 * 21 20 19 24 24 Cl 1.73598 * 120.00100 * 359.72202 * 23 21 20 25 25 H 0.96998 * 120.00541 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47324 * 60.00147 * 10 9 7 27 27 H 1.08999 * 109.47191 * 299.99579 * 10 9 7 28 28 H 0.97003 * 119.99828 * 0.02562 * 13 11 10 29 29 H 1.09007 * 109.47032 * 60.00716 * 14 13 11 30 30 H 1.08994 * 109.47655 * 300.00659 * 14 13 11 31 31 H 1.09004 * 114.17125 * 254.44191 * 17 15 14 32 32 H 1.08997 * 114.17230 * 26.96061 * 17 15 14 33 33 H 1.08998 * 113.47833 * 219.20927 * 18 17 15 34 34 H 1.09001 * 113.47685 * 88.73974 * 18 17 15 35 35 H 1.09000 * 109.46841 * 314.02544 * 20 19 18 36 36 H 1.09005 * 109.46746 * 194.03203 * 20 19 18 37 37 H 1.08004 * 119.99566 * 179.72139 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4405 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4705 -2.1372 0.0005 9 16 3.7723 -1.2018 0.0012 10 6 4.0868 -2.9843 0.0009 11 6 5.5733 -3.2321 0.0008 12 8 6.3442 -2.2958 0.0014 13 7 6.0461 -4.4942 0.0011 14 6 7.4911 -4.7352 0.0005 15 6 7.7569 -6.2419 0.0004 16 1 7.5864 -6.6999 -0.9739 17 6 9.1031 -6.6268 0.6298 18 6 8.3004 -7.7994 1.2106 19 7 7.0954 -6.9552 1.1088 20 6 5.9474 -7.7329 0.6236 21 6 5.4496 -8.6338 1.7244 22 17 6.4595 -9.9129 2.3225 23 6 4.2501 -8.4547 2.2272 24 17 3.2402 -7.1757 1.6290 25 1 -0.4851 0.8400 -0.0004 26 1 3.6443 -3.4311 -0.8893 27 1 3.6436 -3.4315 0.8907 28 1 5.4295 -5.2431 0.0011 29 1 7.9344 -4.2877 0.8901 30 1 7.9336 -4.2884 -0.8898 31 1 9.8652 -6.9215 -0.0916 32 1 9.4664 -5.9185 1.3744 33 1 8.5725 -8.0458 2.2369 34 1 8.2749 -8.6730 0.5592 35 1 6.2529 -8.3373 -0.2305 36 1 5.1501 -7.0537 0.3214 37 1 3.8917 -9.1032 3.0130 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670606491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:15 Heat of formation + Delta-G solvation = -18.771119 kcal Electronic energy + Delta-G solvation = -22089.615572 eV Core-core repulsion = 18466.680718 eV Total energy + Delta-G solvation = -3622.934854 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.61501 -40.33714 -38.29920 -37.62551 -35.65037 -34.68318 -34.64598 -31.69426 -30.60368 -28.67582 -27.83058 -25.59329 -24.17792 -21.91105 -21.13971 -20.75023 -19.88854 -18.15078 -17.86676 -17.45571 -17.08741 -16.95247 -16.58109 -16.43140 -15.75391 -15.63812 -15.03538 -14.90671 -14.64311 -14.27894 -14.18167 -13.70893 -13.67766 -13.35617 -13.16896 -13.01532 -12.79131 -12.77901 -12.70292 -12.51788 -12.43856 -11.90420 -11.78825 -11.71605 -11.35869 -11.17669 -10.97436 -10.56019 -10.16448 -10.06221 -9.84951 -9.00836 -8.52198 -6.23336 0.42697 0.52433 0.97210 1.31090 1.46266 1.54395 1.55715 1.75232 2.18979 2.25423 2.69009 2.85968 2.92744 3.28334 3.58659 3.71925 3.80588 4.05777 4.07163 4.16300 4.26902 4.29720 4.39422 4.40678 4.59933 4.63847 4.76218 4.83214 4.87123 5.02502 5.16074 5.23597 5.43247 5.69863 5.95335 6.10253 6.39815 6.92698 7.15461 8.60381 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.016163 B = 0.002973 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.982664 B = 9416.069277 C =10970.181154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.046 3.954 3 Si 0.915 3.085 4 H -0.261 1.261 5 H -0.258 1.258 6 H -0.237 1.237 7 C -0.530 4.530 8 H 0.060 0.940 9 S -0.168 6.168 10 C -0.112 4.112 11 C 0.534 3.466 12 O -0.560 6.560 13 N -0.708 5.708 14 C 0.137 3.863 15 C 0.019 3.981 16 H 0.107 0.893 17 C -0.125 4.125 18 C 0.002 3.998 19 N -0.476 5.476 20 C 0.041 3.959 21 C -0.060 4.060 22 Cl -0.045 7.045 23 C -0.090 4.090 24 Cl -0.068 7.068 25 H 0.277 0.723 26 H 0.110 0.890 27 H 0.105 0.895 28 H 0.405 0.595 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.551 -25.139 1.907 30.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.159 4.159 3 Si 0.736 3.264 4 H -0.185 1.185 5 H -0.183 1.183 6 H -0.160 1.160 7 C -0.678 4.678 8 H 0.078 0.922 9 S 0.058 5.942 10 C -0.263 4.263 11 C 0.320 3.680 12 O -0.438 6.438 13 N -0.361 5.361 14 C 0.013 3.987 15 C -0.091 4.091 16 H 0.124 0.876 17 C -0.163 4.163 18 C -0.126 4.126 19 N -0.199 5.199 20 C -0.087 4.087 21 C -0.088 4.088 22 Cl -0.017 7.017 23 C -0.137 4.137 24 Cl -0.040 7.040 25 H 0.087 0.913 26 H 0.128 0.872 27 H 0.123 0.877 28 H 0.242 0.758 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.122 0.878 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.114 0.886 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 18.385 -23.171 2.486 29.683 hybrid contribution -1.603 -1.190 -0.555 2.071 sum 16.782 -24.360 1.932 29.644 Atomic orbital electron populations 1.70016 1.07324 1.29064 1.49100 1.25569 0.95282 1.02274 0.92807 0.85865 0.80689 0.79500 0.80314 1.18523 1.18263 1.16040 1.22451 0.90295 0.96648 1.58383 0.92202 1.84647 1.06347 1.05606 1.97551 1.23254 0.96221 0.99998 1.06834 1.19894 0.89266 0.83431 0.75440 1.90682 1.59165 1.43623 1.50329 1.45728 1.08969 1.06374 1.75043 1.21464 0.79694 0.95340 1.02196 1.23804 0.96291 0.93094 0.95861 0.87563 1.23176 0.94852 0.97719 1.00549 1.23860 0.89787 0.95979 1.02998 1.69142 1.02220 1.17385 1.31126 1.22074 0.97167 0.95412 0.94035 1.22983 0.92614 0.93661 0.99565 1.98398 1.67999 1.48219 1.87080 1.24643 0.92717 0.94737 1.01572 1.98437 1.67948 1.50344 1.87261 0.91328 0.87218 0.87721 0.75830 0.92027 0.90831 0.87822 0.88884 0.89556 0.89556 0.89860 0.88580 0.80810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.45 13.97 21.65 0.30 -56.15 16 2 C 0.05 2.74 5.50 84.86 0.47 3.21 16 3 Si 0.91 45.46 27.74 68.60 1.90 47.36 16 4 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 6 H -0.24 -11.75 6.74 99.48 0.67 -11.08 16 7 C -0.53 -31.42 10.04 67.95 0.68 -30.74 16 8 H 0.06 3.75 8.03 -2.92 -0.02 3.73 16 9 S -0.17 -8.68 18.55 -56.49 -1.05 -9.73 16 10 C -0.11 -4.44 6.16 71.24 0.44 -4.00 16 11 C 0.53 19.20 7.85 87.66 0.69 19.89 16 12 O -0.56 -24.38 15.86 -3.04 -0.05 -24.43 16 13 N -0.71 -18.03 5.46 -463.06 -2.53 -20.56 16 14 C 0.14 2.81 5.82 86.38 0.50 3.31 16 15 C 0.02 0.24 3.25 42.19 0.14 0.38 16 16 H 0.11 1.00 7.77 -2.39 -0.02 0.98 16 17 C -0.12 -1.18 8.00 30.94 0.25 -0.93 16 18 C 0.00 0.02 5.79 83.57 0.48 0.51 16 19 N -0.48 -6.87 5.97 -906.68 -5.41 -12.29 16 20 C 0.04 0.55 4.82 85.56 0.41 0.97 16 21 C -0.06 -0.83 6.03 25.36 0.15 -0.67 16 22 Cl -0.05 -0.55 26.85 -2.72 -0.07 -0.62 16 23 C -0.09 -1.32 10.54 67.49 0.71 -0.61 16 24 Cl -0.07 -1.33 26.97 -2.72 -0.07 -1.41 16 25 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 26 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 27 H 0.10 3.96 8.14 -2.40 -0.02 3.94 16 28 H 0.41 8.73 6.22 -92.71 -0.58 8.15 16 29 H 0.06 1.46 7.88 -2.38 -0.02 1.44 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.09 1.04 7.94 -2.39 -0.02 1.03 16 33 H 0.09 0.98 7.96 -2.39 -0.02 0.96 16 34 H 0.09 0.66 7.51 -2.39 -0.02 0.65 16 35 H 0.08 0.82 7.56 -2.39 -0.02 0.80 16 36 H 0.10 1.47 4.19 -2.38 -0.01 1.46 16 37 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -73.19 350.11 -1.57 -74.76 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.49 Total: 11.76 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: 4.92 Total: -8.70 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -7.64 Total: -88.99 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.05 Total: -24.43 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.90 Total: 47.36 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.05 Total: -9.73 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -0.15 Total: -2.03 kcal Total: -73.19 -1.57 -74.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670606491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.987 kcal (2) G-P(sol) polarization free energy of solvation -73.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds