Wall clock time and date at job start Tue Mar 31 2020 20:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39692 * 120.10748 * 308.77322 * 3 2 1 5 5 C 1.37948 * 120.00272 * 180.23259 * 4 3 2 6 6 C 1.38340 * 120.22295 * 359.48700 * 5 4 3 7 7 Br 1.89098 * 119.89349 * 180.23691 * 6 5 4 8 8 C 1.39086 * 120.21573 * 0.25812 * 6 5 4 9 9 N 1.39757 * 120.00480 * 180.02562 * 8 6 5 10 10 N 1.40106 * 119.99987 * 180.02562 * 9 8 6 11 11 C 1.34776 * 119.99718 * 179.97438 * 10 9 8 12 12 O 1.21585 * 119.99870 * 180.02562 * 11 10 9 13 13 N 1.34775 * 119.99991 * 359.97438 * 11 10 9 14 14 C 1.46507 * 119.99801 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.46956 * 180.02562 * 14 13 11 16 16 H 1.07997 * 119.99798 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99373 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00622 * 359.97438 * 17 15 14 19 19 Si 1.86811 * 119.99548 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47097 * 89.99664 * 19 17 15 21 21 H 1.48501 * 109.46801 * 209.99772 * 19 17 15 22 22 H 1.48498 * 109.47084 * 329.99771 * 19 17 15 23 23 C 1.38607 * 119.99318 * 359.97438 * 8 6 5 24 24 H 1.08001 * 119.99944 * 359.97438 * 4 3 2 25 25 H 1.08002 * 119.89178 * 179.77137 * 5 4 3 26 26 H 0.96999 * 119.99856 * 359.97438 * 9 8 6 27 27 H 0.96994 * 119.99642 * 359.97438 * 10 9 8 28 28 H 0.96994 * 120.00383 * 0.02562 * 13 11 10 29 29 H 1.09003 * 109.47220 * 300.00548 * 14 13 11 30 30 H 1.09002 * 109.46703 * 60.00426 * 14 13 11 31 31 H 0.97001 * 120.00183 * 180.02562 * 18 17 15 32 32 H 1.07997 * 120.11202 * 179.97438 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 -0.7558 0.9422 5 6 4.6486 -0.7499 0.9432 6 6 5.3425 -0.0047 0.0067 7 35 7.2334 -0.0086 0.0125 8 6 4.6537 0.7476 -0.9389 9 7 5.3592 1.4983 -1.8834 10 7 4.6653 2.2566 -2.8355 11 6 5.3456 2.9809 -3.7460 12 8 4.7435 3.6393 -4.5720 13 7 6.6934 2.9763 -3.7402 14 6 7.4329 3.7633 -4.7302 15 6 8.9130 3.5863 -4.5086 16 1 9.2673 2.9508 -3.7105 17 6 9.8146 4.2356 -5.3249 18 7 9.3831 5.0090 -6.2971 19 14 11.6494 4.0157 -5.0508 20 1 12.1346 2.8622 -5.8503 21 1 12.3640 5.2468 -5.4737 22 1 11.9079 3.7633 -3.6104 23 6 3.2677 0.7519 -0.9452 24 1 2.7311 -1.3421 1.6724 25 1 5.1888 -1.3325 1.6748 26 1 6.3291 1.4950 -1.8792 27 1 3.6954 2.2602 -2.8394 28 1 7.1737 2.4514 -3.0810 29 1 7.1726 3.4232 -5.7326 30 1 7.1727 4.8165 -4.6249 31 1 10.0175 5.4656 -6.8716 32 1 2.7310 1.3357 -1.6783 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001680659614.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:33 Heat of formation + Delta-G solvation = 51.849387 kcal Electronic energy + Delta-G solvation = -19628.813742 eV Core-core repulsion = 16250.653171 eV Total energy + Delta-G solvation = -3378.160570 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.48900 -40.52184 -38.03621 -37.09940 -36.26754 -34.36878 -33.81296 -32.74093 -30.84854 -29.36933 -29.05157 -25.25024 -24.53225 -23.58651 -21.92632 -20.95629 -20.09100 -18.61142 -18.03353 -17.12873 -16.87430 -16.74349 -16.68448 -16.25705 -15.79736 -15.42710 -15.04581 -14.83055 -14.60768 -14.25174 -14.07751 -14.06693 -13.94260 -12.95037 -12.90147 -12.88420 -12.69853 -12.48871 -12.23964 -11.80779 -11.60752 -11.47366 -11.31842 -10.82901 -10.60955 -9.95484 -9.87974 -8.47096 -8.28163 -6.44382 -0.49269 0.32011 0.57046 0.78658 1.45267 1.47027 1.53995 1.58065 1.76073 2.00901 2.11786 2.42215 2.72208 2.74458 3.07545 3.55267 3.68549 4.04055 4.15312 4.38739 4.63705 4.69343 4.99284 5.08940 5.17745 5.24144 5.25510 5.38903 5.52791 5.56896 5.81864 6.14052 6.26486 6.36234 6.65887 7.13584 7.25309 7.44388 8.83836 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.014385 B = 0.003555 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.065803 B = 7875.041583 C = 9805.961264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.278 3.722 3 C 0.038 3.962 4 C -0.105 4.105 5 C -0.026 4.026 6 C -0.145 4.145 7 Br -0.039 7.039 8 C 0.235 3.765 9 N -0.538 5.538 10 N -0.525 5.525 11 C 0.703 3.297 12 O -0.623 6.623 13 N -0.718 5.718 14 C 0.282 3.718 15 C -0.555 4.555 16 H 0.083 0.917 17 C 0.008 3.992 18 N -0.928 5.928 19 Si 0.981 3.019 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.255 1.255 23 C -0.149 4.149 24 H 0.170 0.830 25 H 0.175 0.825 26 H 0.428 0.572 27 H 0.438 0.562 28 H 0.398 0.602 29 H -0.007 1.007 30 H -0.006 1.006 31 H 0.269 0.731 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.620 -16.189 20.355 26.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.037 4.037 3 C 0.034 3.966 4 C -0.128 4.128 5 C -0.046 4.046 6 C -0.231 4.231 7 Br 0.047 6.953 8 C 0.128 3.872 9 N -0.269 5.269 10 N -0.280 5.280 11 C 0.402 3.598 12 O -0.501 6.501 13 N -0.372 5.372 14 C 0.159 3.841 15 C -0.593 4.593 16 H 0.101 0.899 17 C -0.192 4.192 18 N -0.566 5.566 19 Si 0.804 3.196 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.179 1.179 23 C -0.176 4.176 24 H 0.188 0.812 25 H 0.193 0.807 26 H 0.274 0.726 27 H 0.285 0.715 28 H 0.233 0.767 29 H 0.011 0.989 30 H 0.012 0.988 31 H 0.078 0.922 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.944 -15.408 19.380 25.714 hybrid contribution 0.882 0.252 -0.334 0.976 sum -6.062 -15.156 19.045 25.084 Atomic orbital electron populations 1.81318 1.13308 1.09144 1.08912 1.25743 0.92601 0.92707 0.92668 1.15713 0.83224 0.99783 0.97909 1.21259 0.93342 0.99511 0.98728 1.21135 0.93511 0.94663 0.95330 1.21525 0.90937 1.07819 1.02865 1.96831 1.02103 1.98109 1.98305 1.17145 0.91062 0.90902 0.88102 1.43757 1.06348 1.48355 1.28445 1.44271 1.07768 1.47753 1.28239 1.15916 0.82797 0.80077 0.80973 1.90963 1.68893 1.48699 1.41569 1.45372 1.03548 1.51562 1.36764 1.18548 0.90522 0.89127 0.85864 1.21553 0.90226 1.30342 1.17207 0.89857 1.25983 1.05004 0.94032 0.94181 1.70121 1.37030 1.30386 1.19107 0.85213 0.77356 0.77652 0.79372 1.19651 1.21057 1.17858 1.20408 0.90885 1.04204 1.02059 0.81250 0.80726 0.72584 0.71488 0.76657 0.98858 0.98834 0.92202 0.84316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.07 18.54 19.00 0.35 -9.72 16 2 C 0.28 4.64 15.33 88.33 1.35 6.00 16 3 C 0.04 0.47 5.73 -21.37 -0.12 0.35 16 4 C -0.11 -0.79 9.75 22.55 0.22 -0.57 16 5 C -0.03 -0.21 9.76 22.23 0.22 0.00 16 6 C -0.15 -2.02 6.25 22.50 0.14 -1.87 16 7 Br -0.04 -0.61 32.09 -20.37 -0.65 -1.26 16 8 C 0.23 4.01 6.71 38.17 0.26 4.26 16 9 N -0.54 -11.95 6.39 -51.40 -0.33 -12.27 16 10 N -0.52 -14.40 6.22 -184.75 -1.15 -15.54 16 11 C 0.70 27.67 8.68 179.05 1.55 29.22 16 12 O -0.62 -30.23 17.18 -3.98 -0.07 -30.30 16 13 N -0.72 -29.55 5.51 -482.27 -2.66 -32.21 16 14 C 0.28 14.98 5.43 85.63 0.46 15.44 16 15 C -0.56 -29.15 9.28 25.60 0.24 -28.91 16 16 H 0.08 3.93 7.60 -2.91 -0.02 3.91 16 17 C 0.01 0.43 5.46 84.65 0.46 0.90 16 18 N -0.93 -54.52 13.29 21.44 0.28 -54.23 16 19 Si 0.98 41.06 29.54 68.60 2.03 43.08 16 20 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 21 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16 23 C -0.15 -2.23 9.19 22.67 0.21 -2.02 16 24 H 0.17 0.37 8.06 -2.91 -0.02 0.34 16 25 H 0.18 0.49 8.06 -2.91 -0.02 0.46 16 26 H 0.43 9.78 5.08 -213.32 -1.08 8.69 16 27 H 0.44 10.08 6.70 -213.32 -1.43 8.65 16 28 H 0.40 13.75 6.24 -92.71 -0.58 13.18 16 29 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 30 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 31 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 32 H 0.14 1.99 6.20 -2.91 -0.02 1.97 16 Total: -1.00 -70.83 314.14 0.93 -69.90 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -1.87 Total: 19.76 kcal Atomic # 6 Polarization: 17.81 SS G_CDS: 4.99 Total: 22.80 kcal Atomic # 7 Polarization: -120.48 SS G_CDS: -3.50 Total: -123.98 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.07 Total: -30.30 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Atomic # 35 Polarization: -0.61 SS G_CDS: -0.65 Total: -1.26 kcal Total: -70.83 0.93 -69.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680659614.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.752 kcal (2) G-P(sol) polarization free energy of solvation -70.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds