Wall clock time and date at job start Tue Mar 31 2020 21:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.46807 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46906 * 120.00270 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00008 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99910 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99766 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99894 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46896 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00232 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99423 * 180.02562 * 11 10 9 14 14 C 1.47021 * 125.64992 * 359.69048 * 13 11 10 15 15 C 1.54338 * 107.26155 * 178.84864 * 14 13 11 16 16 C 1.55151 * 103.02507 * 338.14263 * 15 14 13 17 17 H 1.09002 * 111.03814 * 277.21846 * 16 15 14 18 18 N 1.46901 * 111.00682 * 153.37920 * 16 15 14 19 19 C 1.46897 * 110.99893 * 161.34738 * 18 16 15 20 20 C 1.50706 * 109.47037 * 179.97438 * 19 18 16 21 21 Cl 1.73599 * 119.99965 * 295.00435 * 20 19 18 22 22 C 1.31288 * 119.99727 * 115.00214 * 20 19 18 23 23 Cl 1.73599 * 120.00309 * 0.02562 * 22 20 19 24 24 C 1.47422 * 125.64362 * 179.97438 * 13 11 10 25 25 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46895 * 300.00170 * 10 9 7 27 27 H 1.09003 * 109.47006 * 60.00004 * 10 9 7 28 28 H 1.08996 * 109.88629 * 298.39392 * 14 13 11 29 29 H 1.08998 * 109.87993 * 59.56543 * 14 13 11 30 30 H 1.09003 * 110.84801 * 219.66798 * 15 14 13 31 31 H 1.09003 * 110.66421 * 96.52847 * 15 14 13 32 32 H 1.00903 * 110.99659 * 37.39529 * 18 16 15 33 33 H 1.08995 * 109.47665 * 300.00145 * 19 18 16 34 34 H 1.09004 * 109.47130 * 60.00293 * 19 18 16 35 35 H 1.08000 * 120.00401 * 180.02562 * 22 20 19 36 36 H 1.09003 * 110.37421 * 322.92887 * 24 13 11 37 37 H 1.08997 * 110.36947 * 85.25257 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1041 1.6963 1.2125 6 1 3.1041 1.6964 -1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3431 0.0003 14 6 4.3110 -6.2451 -0.0051 15 6 4.8664 -7.6847 0.0273 16 6 3.6844 -8.5024 0.6118 17 1 3.6692 -8.4448 1.7002 18 7 3.7374 -9.8998 0.1619 19 6 2.9223 -10.7627 1.0273 20 6 3.0006 -12.1851 0.5355 21 17 2.3508 -12.6030 -1.0192 22 6 3.5602 -13.1081 1.2828 23 17 4.2094 -12.6904 2.8377 24 6 2.4655 -7.7679 0.0003 25 1 -0.4850 0.8401 0.0004 26 1 3.1244 -3.7314 -0.8895 27 1 3.1245 -3.7314 0.8906 28 1 4.6453 -5.7370 -0.9096 29 1 4.6493 -5.6994 0.8758 30 1 5.7389 -7.7494 0.6774 31 1 5.1108 -8.0254 -0.9789 32 1 4.6901 -10.2293 0.1169 33 1 3.2969 -10.7102 2.0495 34 1 1.8856 -10.4267 1.0026 35 1 3.6168 -14.1274 0.9303 36 1 1.5798 -7.9252 0.6160 37 1 2.2867 -8.1129 -1.0180 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713145806.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:22 Heat of formation + Delta-G solvation = -48.384958 kcal Electronic energy + Delta-G solvation = -21406.197319 eV Core-core repulsion = 17781.978313 eV Total energy + Delta-G solvation = -3624.219007 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.08177 -39.15687 -38.29879 -37.56016 -36.33636 -34.58822 -33.72621 -31.76288 -30.82736 -28.87256 -27.66096 -26.28959 -23.97143 -21.85654 -21.11393 -20.70374 -19.60570 -18.13059 -17.79580 -17.71136 -16.88465 -16.71654 -16.27196 -16.22304 -15.60810 -15.49127 -14.99302 -14.72844 -14.40151 -14.32745 -13.96912 -13.74651 -13.65395 -13.38349 -13.16202 -13.04370 -12.86252 -12.71839 -12.63757 -12.52756 -12.22811 -12.03397 -11.85795 -11.75597 -11.53756 -11.12878 -11.00308 -10.29324 -10.00182 -9.73910 -9.52384 -8.68954 -8.34556 -6.13745 0.45531 0.54926 1.23238 1.44366 1.44682 1.54796 1.55095 1.81419 2.05705 2.27356 2.99341 3.02071 3.21511 3.39944 3.59745 3.66284 3.90409 4.05937 4.17781 4.22027 4.33040 4.43800 4.45583 4.49560 4.64515 4.66625 4.76950 4.82728 4.88912 4.97605 5.14381 5.31462 5.41157 5.84268 6.19429 6.30290 6.40556 7.06106 7.09778 8.74534 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.026746 B = 0.001929 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.644795 B =14514.997488 C =14878.559171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.279 1.279 5 H -0.261 1.261 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.118 4.118 11 C 0.545 3.455 12 O -0.569 6.569 13 N -0.617 5.617 14 C 0.092 3.908 15 C -0.115 4.115 16 C 0.087 3.913 17 H 0.069 0.931 18 N -0.668 5.668 19 C 0.083 3.917 20 C -0.063 4.063 21 Cl -0.051 7.051 22 C -0.085 4.085 23 Cl -0.064 7.064 24 C 0.114 3.886 25 H 0.271 0.729 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.097 0.903 32 H 0.361 0.639 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.178 0.822 36 H 0.053 0.947 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.511 -28.699 2.836 33.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.204 1.204 5 H -0.185 1.185 6 H -0.186 1.186 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.269 4.269 11 C 0.333 3.667 12 O -0.448 6.448 13 N -0.352 5.352 14 C -0.030 4.030 15 C -0.153 4.153 16 C -0.024 4.024 17 H 0.087 0.913 18 N -0.301 5.301 19 C -0.046 4.046 20 C -0.091 4.091 21 Cl -0.022 7.022 22 C -0.132 4.132 23 Cl -0.036 7.036 24 C -0.009 4.009 25 H 0.080 0.920 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.131 0.869 31 H 0.115 0.885 32 H 0.182 0.818 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.195 0.805 36 H 0.072 0.928 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.068 -28.763 2.364 32.106 hybrid contribution 1.554 1.162 0.629 2.040 sum 15.622 -27.602 2.994 31.857 Atomic orbital electron populations 1.70187 1.08025 1.28701 1.47896 1.26169 0.95995 1.03405 0.93694 0.84980 0.77782 0.75516 0.79568 1.20430 1.18526 1.18580 1.23153 0.95339 0.91785 1.59045 0.89805 1.85619 1.10632 0.99366 1.97048 1.23286 1.03345 0.93799 1.06442 1.19812 0.85442 0.86060 0.75404 1.90685 1.17178 1.85787 1.51110 1.48368 1.08088 1.05570 1.73189 1.22342 0.77716 0.99641 1.03339 1.22775 0.97252 0.91222 1.04015 1.22478 0.94472 0.87721 0.97699 0.91280 1.60147 1.17197 1.00230 1.52543 1.21274 1.00340 0.87412 0.95539 1.23074 1.00515 0.96626 0.88931 1.98423 1.84388 1.93058 1.26371 1.24662 0.99685 1.01165 0.87667 1.98401 1.84393 1.93676 1.27126 1.22219 0.98148 0.79127 1.01405 0.91978 0.87517 0.87394 0.90164 0.90055 0.86881 0.88478 0.81824 0.90794 0.89884 0.80531 0.92831 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.54 13.22 21.65 0.29 -56.25 16 2 C 0.01 0.69 5.49 84.86 0.47 1.16 16 3 Si 1.00 43.64 29.55 68.60 2.03 45.66 16 4 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 6 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.55 -31.40 9.50 67.96 0.65 -30.75 16 8 H 0.08 4.44 7.80 -2.92 -0.02 4.42 16 9 S -0.15 -8.74 20.57 -56.49 -1.16 -9.91 16 10 C -0.12 -4.85 5.35 71.24 0.38 -4.47 16 11 C 0.54 21.67 7.87 87.66 0.69 22.36 16 12 O -0.57 -28.17 16.12 -3.01 -0.05 -28.22 16 13 N -0.62 -17.42 3.33 -811.82 -2.70 -20.12 16 14 C 0.09 1.65 6.49 86.73 0.56 2.21 16 15 C -0.11 -1.24 6.42 31.79 0.20 -1.04 16 16 C 0.09 1.25 3.32 46.30 0.15 1.41 16 17 H 0.07 0.98 7.92 -2.39 -0.02 0.96 16 18 N -0.67 -8.01 6.36 -488.44 -3.11 -11.12 16 19 C 0.08 1.03 5.72 85.56 0.49 1.52 16 20 C -0.06 -0.71 6.02 25.36 0.15 -0.56 16 21 Cl -0.05 -0.71 28.99 -2.72 -0.08 -0.79 16 22 C -0.09 -0.73 10.54 67.50 0.71 -0.01 16 23 Cl -0.06 -0.63 26.97 -2.72 -0.07 -0.70 16 24 C 0.11 2.76 6.55 86.85 0.57 3.33 16 25 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 26 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 27 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.36 3.01 8.52 -89.69 -0.76 2.24 16 33 H 0.07 0.82 5.96 -2.39 -0.01 0.81 16 34 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 36 H 0.05 1.51 8.04 -2.39 -0.02 1.49 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -77.21 359.45 0.50 -76.71 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.33 Total: 9.57 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 5.03 Total: -4.84 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -5.52 Total: -87.49 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.05 Total: -28.22 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.16 Total: -9.91 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.15 Total: -1.49 kcal Total: -77.21 0.50 -76.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713145806.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.329 kcal (2) G-P(sol) polarization free energy of solvation -77.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds