Wall clock time and date at job start Tue Mar 31 2020 21:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 119.99643 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 120.00353 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00445 * 3 2 1 7 7 C 1.38798 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99506 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99738 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47234 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99701 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00005 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99680 * 180.02562 * 13 11 10 15 15 H 1.08993 * 112.85483 * 336.19549 * 14 13 11 16 16 C 1.53786 * 113.61199 * 107.50341 * 14 13 11 17 17 C 1.53779 * 87.08139 * 89.11600 * 16 14 13 18 18 H 1.09003 * 113.61403 * 270.87844 * 17 16 14 19 19 N 1.46907 * 113.68933 * 139.99378 * 17 16 14 20 20 C 1.46895 * 110.99846 * 107.46348 * 19 17 16 21 21 C 1.50702 * 109.46934 * 179.97438 * 20 19 17 22 22 C 1.31332 * 119.99926 * 125.00087 * 21 20 19 23 23 Cl 1.73597 * 120.00186 * 359.97438 * 22 21 20 24 24 Cl 1.73603 * 119.99843 * 180.02562 * 22 21 20 25 25 C 1.53777 * 87.08348 * 25.43076 * 17 16 14 26 26 H 0.97005 * 119.99723 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47255 * 299.99975 * 10 9 7 28 28 H 1.09001 * 109.46783 * 60.00283 * 10 9 7 29 29 H 0.96995 * 120.00238 * 359.97438 * 13 11 10 30 30 H 1.09004 * 113.61420 * 203.66591 * 16 14 13 31 31 H 1.08999 * 113.61496 * 334.56563 * 16 14 13 32 32 H 1.00902 * 110.99691 * 231.41397 * 19 17 16 33 33 H 1.08997 * 109.47433 * 299.99596 * 20 19 17 34 34 H 1.09000 * 109.47811 * 60.00180 * 20 19 17 35 35 H 1.07999 * 120.00111 * 305.00096 * 21 20 19 36 36 H 1.08998 * 113.61528 * 220.02131 * 25 17 16 37 37 H 1.09009 * 113.69031 * 89.12557 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6966 -1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0021 11 6 1.9876 -5.3027 -0.0017 12 8 0.7913 -5.5023 -0.0009 13 7 2.8444 -6.3430 -0.0022 14 6 2.3307 -7.7150 -0.0024 15 1 1.3218 -7.7893 0.4033 16 6 2.5112 -8.4401 -1.3465 17 6 3.8839 -8.8975 -0.8258 18 1 4.6908 -8.2001 -1.0508 19 7 4.2154 -10.2853 -1.1756 20 6 5.2528 -10.3328 -2.2146 21 6 5.5662 -11.7691 -2.5461 22 6 5.4844 -12.1894 -3.7877 23 17 5.0145 -11.0906 -5.0468 24 17 5.8449 -13.8441 -4.1694 25 6 3.3108 -8.7398 0.5925 26 1 -0.4850 -0.8401 0.0004 27 1 3.1239 -3.7308 -0.8925 28 1 3.1252 -3.7316 0.8875 29 1 3.8011 -6.1834 -0.0032 30 1 1.8073 -9.2583 -1.4992 31 1 2.5707 -7.7666 -2.2014 32 1 4.4974 -10.8066 -0.3590 33 1 4.8949 -9.8229 -3.1090 34 1 6.1541 -9.8393 -1.8511 35 1 5.8581 -12.4528 -1.7627 36 1 4.0160 -8.3082 1.3028 37 1 2.8254 -9.6394 0.9713 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713941412.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:54 Heat of formation + Delta-G solvation = -17.435910 kcal Electronic energy + Delta-G solvation = -20902.746525 eV Core-core repulsion = 17279.869569 eV Total energy + Delta-G solvation = -3622.876955 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.27677 -38.50557 -37.93440 -37.04361 -35.86924 -33.36759 -32.54230 -31.78755 -29.16664 -26.15669 -25.77376 -24.85574 -23.23003 -21.15405 -20.76429 -19.42600 -18.36625 -17.34410 -16.89530 -16.44044 -16.19058 -15.55237 -15.13544 -15.02504 -14.71630 -14.30150 -13.90166 -13.85243 -13.38578 -13.13557 -12.85078 -12.60948 -12.55207 -12.41632 -12.20149 -11.95111 -11.91432 -11.77672 -11.65890 -11.30299 -10.93364 -10.83947 -10.66700 -10.18704 -9.65912 -9.60356 -9.54107 -9.06326 -9.00813 -8.84447 -8.24330 -6.68976 -6.63639 -4.01754 0.82547 0.96222 1.90020 2.86736 2.93479 3.33357 3.36605 3.51628 3.57596 3.76220 4.13917 4.23533 4.28539 4.46109 4.58047 4.70806 4.73073 4.84202 4.99140 5.20952 5.23393 5.26455 5.40361 5.45445 5.46662 5.60262 5.72643 5.77205 5.88141 5.93892 5.98324 6.44604 6.66518 6.83087 7.57971 7.89820 8.47993 8.48586 9.25450 10.80217 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.023166 B = 0.001695 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.372376 B =16513.935932 C =17114.175860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.035 3.965 3 Si 1.084 2.916 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.609 4.609 8 H 0.065 0.935 9 S -0.115 6.115 10 C -0.131 4.131 11 C 0.533 3.467 12 O -0.515 6.515 13 N -0.721 5.721 14 C 0.124 3.876 15 H 0.106 0.894 16 C -0.137 4.137 17 C 0.058 3.942 18 H 0.075 0.925 19 N -0.669 5.669 20 C 0.076 3.924 21 C -0.108 4.108 22 C -0.038 4.038 23 Cl -0.033 7.033 24 Cl -0.041 7.041 25 C -0.148 4.148 26 H 0.278 0.722 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.397 0.603 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.343 0.657 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.145 0.855 36 H 0.073 0.927 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.836 -27.626 -4.239 32.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.175 4.175 3 Si 0.910 3.090 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.757 4.757 8 H 0.084 0.916 9 S 0.112 5.888 10 C -0.283 4.283 11 C 0.319 3.681 12 O -0.388 6.388 13 N -0.374 5.374 14 C 0.017 3.983 15 H 0.124 0.876 16 C -0.176 4.176 17 C -0.051 4.051 18 H 0.093 0.907 19 N -0.300 5.300 20 C -0.053 4.053 21 C -0.129 4.129 22 C -0.092 4.092 23 Cl -0.005 7.005 24 Cl -0.013 7.013 25 C -0.187 4.187 26 H 0.090 0.910 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.231 0.769 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.162 0.838 33 H 0.113 0.887 34 H 0.072 0.928 35 H 0.162 0.838 36 H 0.092 0.908 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.079 -26.421 -4.825 29.873 hybrid contribution 3.172 -1.239 0.306 3.419 sum 16.250 -27.660 -4.520 32.397 Atomic orbital electron populations 1.70805 1.06695 1.30972 1.43246 1.26058 0.96329 1.02137 0.93007 0.83330 0.74766 0.74218 0.76692 1.20253 1.21150 1.21141 1.23700 0.96012 0.92212 1.63731 0.91630 1.84836 1.08005 0.98770 1.97223 1.23323 1.05187 0.94523 1.05225 1.20298 0.86596 0.86227 0.74937 1.90707 1.15336 1.85498 1.47306 1.45689 1.09638 1.04766 1.77356 1.21621 0.99038 0.80740 0.96906 0.87580 1.23545 0.96504 0.99872 0.97705 1.23165 0.97237 0.88646 0.96099 0.90716 1.60655 1.42690 1.13091 1.13578 1.21296 0.94187 0.91774 0.98018 1.23098 0.97073 0.98886 0.93836 1.24059 1.08085 0.85719 0.91330 1.98432 1.90323 1.59315 1.52408 1.98432 1.92992 1.15001 1.94855 1.23607 0.99136 1.00018 0.95913 0.90982 0.88963 0.88953 0.76883 0.88370 0.91178 0.83831 0.88729 0.92794 0.83759 0.90799 0.88047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.44 13.67 55.49 0.76 -26.68 16 2 C 0.04 1.02 5.49 -17.43 -0.10 0.93 16 3 Si 1.08 24.81 29.92 -169.99 -5.09 19.72 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.61 -17.47 9.50 30.94 0.29 -17.17 16 8 H 0.07 1.80 7.80 -52.49 -0.41 1.39 16 9 S -0.11 -3.07 19.60 -107.50 -2.11 -5.18 16 10 C -0.13 -2.60 6.16 36.01 0.22 -2.38 16 11 C 0.53 9.64 7.85 -10.99 -0.09 9.55 16 12 O -0.51 -11.44 15.46 5.55 0.09 -11.35 16 13 N -0.72 -9.01 5.26 -53.01 -0.28 -9.29 16 14 C 0.12 1.34 4.32 -67.11 -0.29 1.05 16 15 H 0.11 1.39 7.46 -51.93 -0.39 1.00 16 16 C -0.14 -1.34 7.68 -25.92 -0.20 -1.53 16 17 C 0.06 0.42 4.01 -66.90 -0.27 0.15 16 18 H 0.07 0.52 7.87 -51.93 -0.41 0.11 16 19 N -0.67 -4.16 6.55 -107.13 -0.70 -4.86 16 20 C 0.08 0.45 5.82 -4.98 -0.03 0.42 16 21 C -0.11 -0.59 9.51 -36.11 -0.34 -0.94 16 22 C -0.04 -0.26 6.97 28.93 0.20 -0.05 16 23 Cl -0.03 -0.25 26.92 -51.86 -1.40 -1.65 16 24 Cl -0.04 -0.27 29.06 -51.86 -1.51 -1.78 16 25 C -0.15 -1.06 7.40 -25.92 -0.19 -1.25 16 26 H 0.28 8.82 7.12 -40.82 -0.29 8.53 16 27 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 28 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 29 H 0.40 3.80 8.70 -40.82 -0.36 3.44 16 30 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.34 1.58 8.54 -39.29 -0.34 1.25 16 33 H 0.09 0.69 6.01 -51.93 -0.31 0.38 16 34 H 0.05 0.27 8.13 -51.93 -0.42 -0.15 16 35 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 LS Contribution 361.02 15.07 5.44 5.44 Total: -1.00 -34.29 361.02 -10.25 -44.55 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -4.68 Total: 2.31 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -0.79 Total: -11.23 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: -0.22 Total: -40.83 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.09 Total: 19.72 kcal Atomic # 16 Polarization: -3.07 SS G_CDS: -2.11 Total: -5.18 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -2.90 Total: -3.43 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.29 -10.25 -44.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713941412.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.110 kcal (2) G-P(sol) polarization free energy of solvation -34.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds