Wall clock time and date at job start Tue Mar 31 2020 21:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 119.99643 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 120.00353 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00445 * 3 2 1 7 7 C 1.38798 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99506 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99738 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47234 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99701 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00005 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99680 * 180.02562 * 13 11 10 15 15 H 1.08993 * 112.85483 * 336.19549 * 14 13 11 16 16 C 1.53786 * 113.61199 * 107.50341 * 14 13 11 17 17 C 1.53779 * 87.08139 * 89.11600 * 16 14 13 18 18 H 1.09003 * 113.61403 * 270.87844 * 17 16 14 19 19 N 1.46907 * 113.68933 * 139.99378 * 17 16 14 20 20 C 1.46895 * 110.99846 * 107.46348 * 19 17 16 21 21 C 1.50702 * 109.46934 * 179.97438 * 20 19 17 22 22 C 1.31332 * 119.99926 * 125.00087 * 21 20 19 23 23 Cl 1.73597 * 120.00186 * 359.97438 * 22 21 20 24 24 Cl 1.73603 * 119.99843 * 180.02562 * 22 21 20 25 25 C 1.53777 * 87.08348 * 25.43076 * 17 16 14 26 26 H 0.97005 * 119.99723 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47255 * 299.99975 * 10 9 7 28 28 H 1.09001 * 109.46783 * 60.00283 * 10 9 7 29 29 H 0.96995 * 120.00238 * 359.97438 * 13 11 10 30 30 H 1.09004 * 113.61420 * 203.66591 * 16 14 13 31 31 H 1.08999 * 113.61496 * 334.56563 * 16 14 13 32 32 H 1.00902 * 110.99691 * 231.41397 * 19 17 16 33 33 H 1.08997 * 109.47433 * 299.99596 * 20 19 17 34 34 H 1.09000 * 109.47811 * 60.00180 * 20 19 17 35 35 H 1.07999 * 120.00111 * 305.00096 * 21 20 19 36 36 H 1.08998 * 113.61528 * 220.02131 * 25 17 16 37 37 H 1.09009 * 113.69031 * 89.12557 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6966 -1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0021 11 6 1.9876 -5.3027 -0.0017 12 8 0.7913 -5.5023 -0.0009 13 7 2.8444 -6.3430 -0.0022 14 6 2.3307 -7.7150 -0.0024 15 1 1.3218 -7.7893 0.4033 16 6 2.5112 -8.4401 -1.3465 17 6 3.8839 -8.8975 -0.8258 18 1 4.6908 -8.2001 -1.0508 19 7 4.2154 -10.2853 -1.1756 20 6 5.2528 -10.3328 -2.2146 21 6 5.5662 -11.7691 -2.5461 22 6 5.4844 -12.1894 -3.7877 23 17 5.0145 -11.0906 -5.0468 24 17 5.8449 -13.8441 -4.1694 25 6 3.3108 -8.7398 0.5925 26 1 -0.4850 -0.8401 0.0004 27 1 3.1239 -3.7308 -0.8925 28 1 3.1252 -3.7316 0.8875 29 1 3.8011 -6.1834 -0.0032 30 1 1.8073 -9.2583 -1.4992 31 1 2.5707 -7.7666 -2.2014 32 1 4.4974 -10.8066 -0.3590 33 1 4.8949 -9.8229 -3.1090 34 1 6.1541 -9.8393 -1.8511 35 1 5.8581 -12.4528 -1.7627 36 1 4.0160 -8.3082 1.3028 37 1 2.8254 -9.6394 0.9713 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713941412.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:53 Heat of formation + Delta-G solvation = -41.785317 kcal Electronic energy + Delta-G solvation = -20903.802394 eV Core-core repulsion = 17279.869569 eV Total energy + Delta-G solvation = -3623.932825 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.29193 -39.58338 -38.50782 -37.54801 -36.50406 -34.74996 -34.41024 -32.52798 -30.61432 -27.12186 -26.80613 -26.37148 -23.97221 -22.24733 -21.43912 -20.45805 -20.24793 -18.20373 -17.76554 -17.42734 -17.10624 -16.52614 -16.44918 -16.06977 -15.73470 -15.47816 -15.39896 -14.87603 -14.49777 -14.42134 -14.01507 -13.92066 -13.67044 -13.35892 -13.12366 -13.05567 -12.73267 -12.65223 -12.48022 -12.21157 -11.95374 -11.83947 -11.59189 -11.55805 -11.39734 -11.09464 -11.06604 -10.32487 -10.14366 -10.12203 -9.37637 -8.92261 -8.87055 -6.27596 0.34886 0.50879 1.19477 1.40989 1.49640 1.52371 1.60920 1.81066 2.15856 2.35232 3.02534 3.13688 3.25256 3.48911 3.56881 3.82263 3.91541 4.03905 4.12356 4.15686 4.17848 4.36978 4.39632 4.58047 4.79016 4.84324 4.85506 4.96803 5.01882 5.06916 5.14699 5.52082 5.64195 6.00698 6.14838 6.42922 6.45753 7.06437 7.16823 8.51088 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.023166 B = 0.001695 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.372376 B =16513.935932 C =17114.175860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.020 4.020 3 Si 1.136 2.864 4 H -0.281 1.281 5 H -0.262 1.262 6 H -0.263 1.263 7 C -0.614 4.614 8 H 0.076 0.924 9 S -0.197 6.197 10 C -0.110 4.110 11 C 0.535 3.465 12 O -0.565 6.565 13 N -0.693 5.693 14 C 0.107 3.893 15 H 0.079 0.921 16 C -0.139 4.139 17 C 0.073 3.927 18 H 0.085 0.915 19 N -0.673 5.673 20 C 0.076 3.924 21 C -0.092 4.092 22 C -0.055 4.055 23 Cl -0.049 7.049 24 Cl -0.043 7.043 25 C -0.125 4.125 26 H 0.260 0.740 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.416 0.584 30 H 0.095 0.905 31 H 0.051 0.949 32 H 0.357 0.643 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.167 0.833 36 H 0.091 0.909 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.067 -28.601 -3.471 34.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.223 4.223 3 Si 0.954 3.046 4 H -0.206 1.206 5 H -0.187 1.187 6 H -0.188 1.188 7 C -0.761 4.761 8 H 0.094 0.906 9 S 0.030 5.970 10 C -0.261 4.261 11 C 0.321 3.679 12 O -0.443 6.443 13 N -0.346 5.346 14 C 0.001 3.999 15 H 0.098 0.902 16 C -0.179 4.179 17 C -0.036 4.036 18 H 0.103 0.897 19 N -0.306 5.306 20 C -0.053 4.053 21 C -0.112 4.112 22 C -0.109 4.109 23 Cl -0.021 7.021 24 Cl -0.015 7.015 25 C -0.164 4.164 26 H 0.071 0.929 27 H 0.130 0.870 28 H 0.132 0.868 29 H 0.254 0.746 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.178 0.822 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.184 0.816 36 H 0.109 0.891 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 16.376 -27.469 -4.053 32.236 hybrid contribution 2.206 -1.105 0.072 2.469 sum 18.583 -28.574 -3.982 34.317 Atomic orbital electron populations 1.70924 1.08032 1.29989 1.45884 1.27843 0.96319 1.06415 0.91714 0.82719 0.73938 0.69485 0.78453 1.20614 1.18713 1.18800 1.24037 0.96538 0.92777 1.62789 0.90578 1.85094 1.13246 1.01199 1.97483 1.23230 1.02154 0.93601 1.07121 1.20025 0.86312 0.86613 0.74950 1.90698 1.17481 1.86005 1.50150 1.45392 1.09955 1.04341 1.74904 1.21827 0.99110 0.80311 0.98693 0.90227 1.23532 0.98709 0.99375 0.96263 1.22981 0.95872 0.89472 0.95323 0.89715 1.60514 1.43229 1.12539 1.14316 1.21282 0.94634 0.91979 0.97409 1.23297 0.95264 0.98915 0.93745 1.24144 1.09728 0.85612 0.91409 1.98426 1.90589 1.59838 1.53270 1.98429 1.93095 1.15088 1.94919 1.23509 0.97873 0.98818 0.96185 0.92892 0.87033 0.86820 0.74630 0.88661 0.92975 0.82246 0.90228 0.91130 0.81621 0.89087 0.86698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.07 13.67 21.65 0.30 -57.78 16 2 C -0.02 -1.15 5.49 84.86 0.47 -0.68 16 3 Si 1.14 48.95 29.92 68.60 2.05 51.00 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 6 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 7 C -0.61 -35.20 9.50 67.95 0.65 -34.55 16 8 H 0.08 4.06 7.80 -2.91 -0.02 4.04 16 9 S -0.20 -10.80 19.60 -56.49 -1.11 -11.90 16 10 C -0.11 -4.23 6.16 71.24 0.44 -3.79 16 11 C 0.54 19.09 7.85 87.66 0.69 19.78 16 12 O -0.57 -25.85 15.46 -3.04 -0.05 -25.89 16 13 N -0.69 -16.06 5.26 -440.03 -2.32 -18.38 16 14 C 0.11 2.18 4.32 45.52 0.20 2.37 16 15 H 0.08 2.10 7.46 -2.39 -0.02 2.08 16 16 C -0.14 -2.56 7.68 31.12 0.24 -2.32 16 17 C 0.07 0.83 4.01 45.44 0.18 1.01 16 18 H 0.09 0.84 7.87 -2.39 -0.02 0.82 16 19 N -0.67 -6.20 6.55 -492.86 -3.23 -9.43 16 20 C 0.08 0.68 5.82 85.56 0.50 1.18 16 21 C -0.09 -0.77 9.51 25.32 0.24 -0.52 16 22 C -0.06 -0.66 6.97 67.46 0.47 -0.19 16 23 Cl -0.05 -0.73 26.92 -2.72 -0.07 -0.80 16 24 Cl -0.04 -0.53 29.06 -2.72 -0.08 -0.61 16 25 C -0.13 -1.38 7.40 31.12 0.23 -1.15 16 26 H 0.26 17.23 7.12 -92.70 -0.66 16.57 16 27 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 28 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 29 H 0.42 6.58 8.70 -92.71 -0.81 5.78 16 30 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.36 1.83 8.54 -89.69 -0.77 1.07 16 33 H 0.08 1.01 6.01 -2.39 -0.01 0.99 16 34 H 0.07 0.44 8.13 -2.39 -0.02 0.42 16 35 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 36 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 Total: -1.00 -77.88 361.02 -0.55 -78.43 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -0.35 Total: 14.23 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: 4.30 Total: -18.86 kcal Atomic # 7 Polarization: -80.34 SS G_CDS: -5.25 Total: -85.59 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.05 Total: -25.89 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 2.05 Total: 51.00 kcal Atomic # 16 Polarization: -10.80 SS G_CDS: -1.11 Total: -11.90 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.15 Total: -1.41 kcal Total: -77.88 -0.55 -78.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713941412.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.645 kcal (2) G-P(sol) polarization free energy of solvation -77.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds