Wall clock time and date at job start Tue Mar 31 2020 21:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 120.00169 * 2 1 4 4 H 1.48497 * 109.47141 * 269.99831 * 3 2 1 5 5 H 1.48505 * 109.47177 * 29.99625 * 3 2 1 6 6 H 1.48496 * 109.47259 * 149.99598 * 3 2 1 7 7 C 1.38799 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99356 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 180.02562 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 H 1.08993 * 112.85549 * 334.66568 * 14 13 11 16 16 C 1.53788 * 113.61630 * 105.86295 * 14 13 11 17 17 C 1.53953 * 87.02124 * 139.94853 * 16 14 13 18 18 H 1.08998 * 113.60864 * 89.20180 * 17 16 14 19 19 N 1.46902 * 113.66550 * 220.06702 * 17 16 14 20 20 C 1.46900 * 110.99830 * 252.56236 * 19 17 16 21 21 C 1.50704 * 109.46695 * 180.02562 * 20 19 17 22 22 C 1.31338 * 119.99669 * 125.00097 * 21 20 19 23 23 Cl 1.73591 * 120.00264 * 359.97438 * 22 21 20 24 24 Cl 1.73603 * 119.99478 * 179.97438 * 22 21 20 25 25 C 1.53782 * 87.11170 * 334.63880 * 17 16 14 26 26 H 0.97003 * 119.99714 * 0.02562 * 1 2 3 27 27 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 28 28 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 29 29 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 30 30 H 1.08996 * 113.61247 * 254.53083 * 16 14 13 31 31 H 1.09002 * 113.61228 * 25.42653 * 16 14 13 32 32 H 1.00898 * 110.99747 * 128.60855 * 19 17 16 33 33 H 1.09006 * 109.46882 * 299.99696 * 20 19 17 34 34 H 1.08990 * 109.47407 * 60.00117 * 20 19 17 35 35 H 1.07999 * 120.00011 * 304.99337 * 21 20 19 36 36 H 1.09004 * 113.61315 * 270.81186 * 25 17 16 37 37 H 1.08994 * 113.68983 * 139.91942 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6528 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0025 11 6 5.5731 -3.2325 0.0026 12 8 6.3440 -2.2963 0.0014 13 7 6.0456 -4.4947 -0.0021 14 6 7.4906 -4.7357 -0.0081 15 1 8.0559 -3.9090 -0.4380 16 6 8.0400 -5.2202 1.3442 17 6 8.9370 -6.1822 0.5441 18 1 9.8991 -5.7522 0.2657 19 7 9.0616 -7.5143 1.1509 20 6 10.3943 -7.7019 1.7397 21 6 10.4845 -9.0767 2.3505 22 6 11.4479 -9.8934 1.9902 23 17 12.6170 -9.3895 0.8101 24 17 11.5521 -11.4767 2.6943 25 6 7.8835 -6.1107 -0.5739 26 1 -0.4850 0.8401 -0.0004 27 1 3.6439 -3.4322 -0.8874 28 1 3.6433 -3.4309 0.8926 29 1 5.4290 -5.2435 -0.0014 30 1 8.5944 -4.4562 1.8891 31 1 7.2975 -5.7266 1.9610 32 1 8.8582 -8.2384 0.4783 33 1 11.1523 -7.5993 0.9631 34 1 10.5600 -6.9498 2.5109 35 1 9.7569 -9.3903 3.0845 36 1 7.0981 -6.8610 -0.4825 37 1 8.3105 -6.0647 -1.5757 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713979314.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:58 Heat of formation + Delta-G solvation = -14.122789 kcal Electronic energy + Delta-G solvation = -20722.574058 eV Core-core repulsion = 17099.840770 eV Total energy + Delta-G solvation = -3622.733288 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.14838 -38.56574 -37.99982 -37.11690 -35.88255 -33.48622 -32.43674 -31.80504 -29.20857 -26.19169 -25.77290 -25.57744 -23.10003 -21.00092 -20.49264 -19.88898 -17.83279 -17.57603 -16.90041 -16.38940 -15.94611 -15.50665 -15.33051 -14.96446 -14.92139 -14.60311 -13.96735 -13.78560 -13.33957 -12.96908 -12.85176 -12.79615 -12.70810 -12.48080 -12.04193 -12.01168 -11.84169 -11.68820 -11.45151 -11.26050 -11.15688 -11.00576 -10.83502 -10.57531 -9.85331 -9.65407 -9.49790 -9.04072 -8.99574 -8.84915 -8.49841 -6.91507 -6.28741 -4.00414 0.75994 0.88241 1.82828 2.77156 2.94997 3.29756 3.33905 3.50689 3.60916 3.84458 4.13548 4.27058 4.33402 4.41417 4.60365 4.66999 4.74422 4.79120 4.87604 5.10382 5.14774 5.24261 5.31109 5.39287 5.42484 5.52926 5.73694 5.78050 5.82870 5.97172 6.02806 6.52808 6.61007 6.81005 7.63033 7.94300 8.41850 8.49742 9.17502 10.80465 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.040785 B = 0.001528 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.359364 B =18314.694122 C =18634.971893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.125 4.125 11 C 0.532 3.468 12 O -0.521 6.521 13 N -0.724 5.724 14 C 0.127 3.873 15 H 0.113 0.887 16 C -0.137 4.137 17 C 0.061 3.939 18 H 0.079 0.921 19 N -0.669 5.669 20 C 0.077 3.923 21 C -0.103 4.103 22 C -0.048 4.048 23 Cl -0.040 7.040 24 Cl -0.038 7.038 25 C -0.149 4.149 26 H 0.271 0.729 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.400 0.600 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.345 0.655 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.153 0.847 36 H 0.094 0.906 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.460 -23.561 2.859 34.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.276 4.276 11 C 0.318 3.682 12 O -0.395 6.395 13 N -0.377 5.377 14 C 0.021 3.979 15 H 0.131 0.869 16 C -0.177 4.177 17 C -0.049 4.049 18 H 0.097 0.903 19 N -0.301 5.301 20 C -0.052 4.052 21 C -0.124 4.124 22 C -0.102 4.102 23 Cl -0.012 7.012 24 Cl -0.010 7.010 25 C -0.187 4.187 26 H 0.080 0.920 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.235 0.765 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.164 0.836 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.170 0.830 36 H 0.113 0.887 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 25.393 -21.785 3.401 33.630 hybrid contribution -0.462 -1.031 -0.765 1.364 sum 24.932 -22.816 2.636 33.898 Atomic orbital electron populations 1.69940 1.05914 1.27751 1.48084 1.24713 0.94448 0.98958 0.93181 0.86734 0.81907 0.83286 0.79917 1.19230 1.19944 1.15919 1.22323 0.88299 0.97540 1.58767 0.89387 1.84780 1.09255 1.00139 1.97428 1.23291 0.94109 1.04345 1.05813 1.20316 0.90553 0.82462 0.74873 1.90691 1.58790 1.42249 1.47789 1.45903 1.06846 1.07984 1.76995 1.22202 0.82102 0.96748 0.96856 0.86864 1.23619 0.99042 0.97753 0.97295 1.22883 0.97328 0.89566 0.95147 0.90315 1.60532 1.27061 1.04002 1.38464 1.21272 0.91279 0.93152 0.99465 1.23266 0.95448 0.94797 0.98855 1.24178 0.97211 0.90193 0.98569 1.98420 1.58148 1.88947 1.55652 1.98439 1.97695 1.23361 1.81520 1.23620 0.98939 0.97831 0.98339 0.91952 0.88510 0.88435 0.76519 0.91151 0.88746 0.83632 0.92878 0.88555 0.83002 0.88725 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.51 13.97 55.49 0.78 -25.74 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.75 27.74 -169.99 -4.72 17.03 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 7 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 8 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 9 S -0.14 -3.59 18.55 -107.50 -1.99 -5.59 16 10 C -0.12 -2.38 6.16 36.01 0.22 -2.16 16 11 C 0.53 9.19 7.85 -10.98 -0.09 9.11 16 12 O -0.52 -11.01 15.48 5.55 0.09 -10.93 16 13 N -0.72 -8.72 5.36 -53.02 -0.28 -9.00 16 14 C 0.13 1.30 4.21 -67.12 -0.28 1.02 16 15 H 0.11 1.36 7.50 -51.93 -0.39 0.97 16 16 C -0.14 -1.24 7.69 -25.82 -0.20 -1.44 16 17 C 0.06 0.41 4.14 -66.81 -0.28 0.13 16 18 H 0.08 0.51 7.87 -51.93 -0.41 0.10 16 19 N -0.67 -3.92 6.55 -107.03 -0.70 -4.62 16 20 C 0.08 0.41 5.83 -4.97 -0.03 0.38 16 21 C -0.10 -0.52 9.51 -36.11 -0.34 -0.86 16 22 C -0.05 -0.27 6.97 28.93 0.20 -0.07 16 23 Cl -0.04 -0.24 26.92 -51.86 -1.40 -1.64 16 24 Cl -0.04 -0.23 29.06 -51.86 -1.51 -1.74 16 25 C -0.15 -1.02 7.40 -25.92 -0.19 -1.21 16 26 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.10 1.71 8.14 -51.91 -0.42 1.28 16 28 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 29 H 0.40 3.73 8.71 -40.82 -0.36 3.37 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.34 1.75 8.54 -39.29 -0.34 1.42 16 33 H 0.05 0.28 6.00 -51.93 -0.31 -0.03 16 34 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.09 0.58 8.11 -51.93 -0.42 0.16 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 359.85 15.07 5.42 5.42 Total: -1.00 -33.03 359.85 -9.84 -42.88 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -4.76 Total: 1.02 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -0.77 Total: -7.10 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: -0.21 Total: -39.36 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.72 Total: 17.03 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.59 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -2.90 Total: -3.38 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.03 -9.84 -42.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713979314.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.753 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds