Wall clock time and date at job start Tue Mar 31 2020 21:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 120.00169 * 2 1 4 4 H 1.48497 * 109.47141 * 269.99831 * 3 2 1 5 5 H 1.48505 * 109.47177 * 29.99625 * 3 2 1 6 6 H 1.48496 * 109.47259 * 149.99598 * 3 2 1 7 7 C 1.38799 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99356 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 180.02562 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 H 1.08993 * 112.85549 * 334.66568 * 14 13 11 16 16 C 1.53788 * 113.61630 * 105.86295 * 14 13 11 17 17 C 1.53953 * 87.02124 * 139.94853 * 16 14 13 18 18 H 1.08998 * 113.60864 * 89.20180 * 17 16 14 19 19 N 1.46902 * 113.66550 * 220.06702 * 17 16 14 20 20 C 1.46900 * 110.99830 * 252.56236 * 19 17 16 21 21 C 1.50704 * 109.46695 * 180.02562 * 20 19 17 22 22 C 1.31338 * 119.99669 * 125.00097 * 21 20 19 23 23 Cl 1.73591 * 120.00264 * 359.97438 * 22 21 20 24 24 Cl 1.73603 * 119.99478 * 179.97438 * 22 21 20 25 25 C 1.53782 * 87.11170 * 334.63880 * 17 16 14 26 26 H 0.97003 * 119.99714 * 0.02562 * 1 2 3 27 27 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 28 28 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 29 29 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 30 30 H 1.08996 * 113.61247 * 254.53083 * 16 14 13 31 31 H 1.09002 * 113.61228 * 25.42653 * 16 14 13 32 32 H 1.00898 * 110.99747 * 128.60855 * 19 17 16 33 33 H 1.09006 * 109.46882 * 299.99696 * 20 19 17 34 34 H 1.08990 * 109.47407 * 60.00117 * 20 19 17 35 35 H 1.07999 * 120.00011 * 304.99337 * 21 20 19 36 36 H 1.09004 * 113.61315 * 270.81186 * 25 17 16 37 37 H 1.08994 * 113.68983 * 139.91942 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6528 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0025 11 6 5.5731 -3.2325 0.0026 12 8 6.3440 -2.2963 0.0014 13 7 6.0456 -4.4947 -0.0021 14 6 7.4906 -4.7357 -0.0081 15 1 8.0559 -3.9090 -0.4380 16 6 8.0400 -5.2202 1.3442 17 6 8.9370 -6.1822 0.5441 18 1 9.8991 -5.7522 0.2657 19 7 9.0616 -7.5143 1.1509 20 6 10.3943 -7.7019 1.7397 21 6 10.4845 -9.0767 2.3505 22 6 11.4479 -9.8934 1.9902 23 17 12.6170 -9.3895 0.8101 24 17 11.5521 -11.4767 2.6943 25 6 7.8835 -6.1107 -0.5739 26 1 -0.4850 0.8401 -0.0004 27 1 3.6439 -3.4322 -0.8874 28 1 3.6433 -3.4309 0.8926 29 1 5.4290 -5.2435 -0.0014 30 1 8.5944 -4.4562 1.8891 31 1 7.2975 -5.7266 1.9610 32 1 8.8582 -8.2384 0.4783 33 1 11.1523 -7.5993 0.9631 34 1 10.5600 -6.9498 2.5109 35 1 9.7569 -9.3903 3.0845 36 1 7.0981 -6.8610 -0.4825 37 1 8.3105 -6.0647 -1.5757 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713979314.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:57 Heat of formation + Delta-G solvation = -37.269542 kcal Electronic energy + Delta-G solvation = -20723.577776 eV Core-core repulsion = 17099.840770 eV Total energy + Delta-G solvation = -3623.737006 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.11057 -39.55785 -38.52610 -37.56389 -36.47422 -34.67327 -34.47714 -32.48218 -30.59779 -27.85671 -26.79699 -26.32493 -23.88798 -21.72120 -21.45682 -20.63053 -19.77454 -18.04966 -17.94645 -17.58740 -17.08057 -16.54907 -16.44027 -16.26192 -15.86934 -15.51841 -15.25890 -14.92797 -14.69069 -14.28426 -13.91356 -13.51067 -13.34578 -13.32643 -13.21162 -13.01080 -12.92707 -12.72227 -12.49760 -12.35783 -12.23224 -11.99525 -11.87804 -11.78265 -11.51380 -11.16412 -10.92444 -10.52408 -10.09070 -10.00488 -9.41676 -8.98460 -8.50836 -6.21478 0.33066 0.46503 1.00695 1.31910 1.39091 1.47850 1.57403 1.58322 2.24558 2.29812 2.73280 2.87447 3.27087 3.53091 3.58671 3.90058 3.94312 4.02275 4.03465 4.26362 4.30636 4.45487 4.48906 4.56176 4.80838 4.85242 4.87439 4.95959 5.06911 5.10863 5.18730 5.59813 5.71414 6.01820 6.12126 6.39850 6.53066 6.94470 7.24117 8.61490 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.040785 B = 0.001528 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.359364 B =18314.694122 C =18634.971893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.046 3.954 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.530 4.530 8 H 0.062 0.938 9 S -0.177 6.177 10 C -0.112 4.112 11 C 0.536 3.464 12 O -0.565 6.565 13 N -0.699 5.699 14 C 0.112 3.888 15 H 0.094 0.906 16 C -0.136 4.136 17 C 0.074 3.926 18 H 0.084 0.916 19 N -0.670 5.670 20 C 0.079 3.921 21 C -0.092 4.092 22 C -0.055 4.055 23 Cl -0.045 7.045 24 Cl -0.043 7.043 25 C -0.130 4.130 26 H 0.277 0.723 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.417 0.583 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.353 0.647 33 H 0.055 0.945 34 H 0.096 0.904 35 H 0.160 0.840 36 H 0.109 0.891 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.749 -24.880 2.778 35.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.160 4.160 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.161 1.161 7 C -0.677 4.677 8 H 0.081 0.919 9 S 0.049 5.951 10 C -0.263 4.263 11 C 0.321 3.679 12 O -0.444 6.444 13 N -0.352 5.352 14 C 0.007 3.993 15 H 0.112 0.888 16 C -0.176 4.176 17 C -0.037 4.037 18 H 0.102 0.898 19 N -0.302 5.302 20 C -0.050 4.050 21 C -0.113 4.113 22 C -0.109 4.109 23 Cl -0.017 7.017 24 Cl -0.015 7.015 25 C -0.169 4.169 26 H 0.086 0.914 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.254 0.746 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.173 0.827 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.178 0.822 36 H 0.128 0.872 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 26.682 -23.174 3.319 35.496 hybrid contribution -0.835 -0.796 -0.718 1.359 sum 25.847 -23.970 2.601 35.347 Atomic orbital electron populations 1.70017 1.07292 1.28997 1.49160 1.25561 0.95269 1.02239 0.92895 0.85867 0.80677 0.79620 0.80202 1.18703 1.18350 1.16099 1.22474 0.90306 0.96699 1.58236 0.91945 1.84707 1.06369 1.06401 1.97587 1.23291 0.96124 0.99475 1.07427 1.19980 0.89269 0.83659 0.74976 1.90680 1.59319 1.43929 1.50437 1.45711 1.08280 1.06568 1.74624 1.22428 0.80288 0.98090 0.98543 0.88803 1.23586 0.99388 0.98068 0.96572 1.22711 0.97208 0.89596 0.94171 0.89788 1.60447 1.27390 1.03709 1.38631 1.21256 0.91032 0.93202 0.99494 1.23298 0.95130 0.94367 0.98456 1.24202 0.97509 0.90223 0.98916 1.98419 1.58434 1.88954 1.55880 1.98438 1.97725 1.23723 1.81604 1.23544 0.99060 0.95431 0.98827 0.91386 0.86833 0.86893 0.74559 0.92363 0.88865 0.82730 0.92728 0.88631 0.82248 0.87238 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.74 13.97 21.65 0.30 -55.43 16 2 C 0.05 2.68 5.50 84.86 0.47 3.15 16 3 Si 0.91 44.97 27.74 68.60 1.90 46.88 16 4 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.24 -11.65 6.74 99.48 0.67 -10.98 16 7 C -0.53 -30.78 10.04 67.95 0.68 -30.10 16 8 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 9 S -0.18 -8.92 18.55 -56.49 -1.05 -9.97 16 10 C -0.11 -4.15 6.16 71.24 0.44 -3.71 16 11 C 0.54 17.88 7.85 87.66 0.69 18.57 16 12 O -0.57 -23.78 15.48 -3.04 -0.05 -23.82 16 13 N -0.70 -15.38 5.36 -440.03 -2.36 -17.74 16 14 C 0.11 2.08 4.21 45.52 0.19 2.28 16 15 H 0.09 2.19 7.50 -2.39 -0.02 2.17 16 16 C -0.14 -2.22 7.69 31.18 0.24 -1.98 16 17 C 0.07 0.80 4.14 45.50 0.19 0.99 16 18 H 0.08 0.88 7.87 -2.39 -0.02 0.86 16 19 N -0.67 -5.98 6.55 -492.55 -3.23 -9.20 16 20 C 0.08 0.66 5.83 85.56 0.50 1.16 16 21 C -0.09 -0.74 9.51 25.32 0.24 -0.50 16 22 C -0.05 -0.54 6.97 67.45 0.47 -0.07 16 23 Cl -0.04 -0.49 26.92 -2.72 -0.07 -0.56 16 24 Cl -0.04 -0.47 29.06 -2.72 -0.08 -0.55 16 25 C -0.13 -1.39 7.40 31.12 0.23 -1.16 16 26 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 27 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 28 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 29 H 0.42 6.50 8.71 -92.71 -0.81 5.69 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.35 2.44 8.54 -89.70 -0.77 1.67 16 33 H 0.05 0.47 6.00 -2.38 -0.01 0.45 16 34 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 36 H 0.11 0.90 8.11 -2.38 -0.02 0.88 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -71.87 359.85 -0.79 -72.65 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -0.49 Total: 9.13 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 4.34 Total: -11.37 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -5.28 Total: -82.38 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.05 Total: -23.82 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.90 Total: 46.88 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.05 Total: -9.97 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.15 Total: -1.11 kcal Total: -71.87 -0.79 -72.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713979314.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.385 kcal (2) G-P(sol) polarization free energy of solvation -71.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds