Wall clock time and date at job start Tue Mar 31 2020 20:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00463 * 2 1 4 4 H 1.48505 * 109.47168 * 240.00162 * 3 2 1 5 5 H 1.48504 * 109.46974 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46896 * 120.00115 * 3 2 1 7 7 C 1.38804 * 119.99650 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00155 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99988 * 0.02562 * 7 2 1 10 10 C 1.81004 * 99.99828 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46820 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99943 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99780 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99773 * 180.27811 * 13 11 10 15 15 C 1.53009 * 109.46701 * 174.68186 * 14 13 11 16 16 N 1.46898 * 115.54763 * 275.65852 * 15 14 13 17 17 C 1.46904 * 111.00155 * 294.70844 * 16 15 14 18 18 C 1.50696 * 109.47080 * 181.81093 * 17 16 15 19 19 C 1.31333 * 119.99635 * 125.00312 * 18 17 16 20 20 Cl 1.73601 * 120.00397 * 359.97438 * 19 18 17 21 21 Cl 1.73604 * 119.99655 * 180.02562 * 19 18 17 22 22 C 1.53002 * 117.49799 * 129.99437 * 15 14 13 23 23 C 1.52996 * 117.50169 * 61.33059 * 15 14 13 24 24 H 0.97006 * 119.99792 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47302 * 59.99763 * 10 9 7 26 26 H 1.09002 * 109.46745 * 299.99792 * 10 9 7 27 27 H 0.97002 * 119.99962 * 359.97438 * 13 11 10 28 28 H 1.08997 * 109.46923 * 294.67098 * 14 13 11 29 29 H 1.08989 * 109.47682 * 54.67861 * 14 13 11 30 30 H 1.00893 * 111.00249 * 170.75678 * 16 15 14 31 31 H 1.08996 * 109.47135 * 301.81269 * 17 16 15 32 32 H 1.09001 * 109.47037 * 61.81134 * 17 16 15 33 33 H 1.07998 * 120.00512 * 304.99740 * 18 17 16 34 34 H 1.08996 * 117.49915 * 359.97438 * 22 15 14 35 35 H 1.08993 * 117.49738 * 145.01525 * 22 15 14 36 36 H 1.08999 * 117.50099 * 214.97797 * 23 15 14 37 37 H 1.08999 * 117.49733 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2126 5 1 1.2854 2.7465 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 16 1.1291 -2.7280 -0.0019 10 6 2.5156 -3.8915 -0.0013 11 6 1.9870 -5.3028 -0.0018 12 8 0.7907 -5.5022 -0.0019 13 7 2.8437 -6.3433 -0.0020 14 6 2.3299 -7.7152 -0.0085 15 6 3.4967 -8.6961 -0.1411 16 7 3.9541 -8.9548 -1.5128 17 6 2.9133 -9.6345 -2.2956 18 6 3.4336 -9.9223 -3.6802 19 6 3.4099 -11.1490 -4.1487 20 17 2.7798 -12.4390 -3.1727 21 17 4.0100 -11.4807 -5.7436 22 6 3.5621 -9.8549 0.8558 23 6 4.5519 -8.6926 0.9667 24 1 -0.4850 0.8401 0.0004 25 1 3.1235 -3.7319 0.8891 26 1 3.1248 -3.7311 -0.8908 27 1 3.8005 -6.1837 -0.0022 28 1 1.7972 -7.9080 0.9227 29 1 1.6493 -7.8443 -0.8499 30 1 4.8120 -9.4859 -1.5138 31 1 2.6442 -10.5707 -1.8066 32 1 2.0337 -8.9943 -2.3637 33 1 3.8259 -9.1199 -4.2874 34 1 2.7741 -9.9183 1.6063 35 1 3.9449 -10.8091 0.4939 36 1 5.5856 -8.8826 0.6778 37 1 4.4152 -7.9911 1.7898 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716676340.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:15 Heat of formation + Delta-G solvation = -7.086120 kcal Electronic energy + Delta-G solvation = -21199.796800 eV Core-core repulsion = 17577.368645 eV Total energy + Delta-G solvation = -3622.428155 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.79893 -38.54894 -37.87326 -37.01857 -35.25445 -33.80589 -32.40826 -31.58946 -29.72364 -26.45946 -25.57202 -25.39006 -22.87503 -20.75466 -20.22057 -20.08295 -17.83966 -17.56424 -16.74018 -16.18574 -15.92809 -15.63024 -15.10965 -14.90732 -14.78407 -14.43363 -13.89627 -13.81337 -13.32319 -13.05600 -12.96996 -12.85718 -12.54590 -12.12174 -11.94992 -11.93937 -11.74574 -11.69535 -11.58747 -11.11367 -11.02340 -11.02273 -10.74701 -10.62167 -9.80385 -9.54981 -9.38195 -9.04320 -8.83311 -8.76460 -8.21226 -6.47439 -6.19533 -3.89791 0.84922 0.97195 1.92106 2.94083 3.14631 3.23096 3.24972 3.29721 3.39063 3.62100 3.89011 4.22656 4.25358 4.31569 4.51699 4.56659 4.80490 4.98241 5.14656 5.15488 5.23639 5.31279 5.35881 5.45688 5.50411 5.52111 5.62024 5.70780 5.82228 5.93609 6.18356 6.45014 6.65957 6.82932 7.61386 7.78435 8.37173 8.66178 9.25659 10.87836 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.016957 B = 0.002007 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.794909 B =13945.710223 C =14784.560668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.152 4.152 11 C 0.532 3.468 12 O -0.521 6.521 13 N -0.729 5.729 14 C 0.169 3.831 15 C 0.038 3.962 16 N -0.641 5.641 17 C 0.076 3.924 18 C -0.102 4.102 19 C -0.047 4.047 20 Cl -0.040 7.040 21 Cl -0.038 7.038 22 C -0.204 4.204 23 C -0.162 4.162 24 H 0.269 0.731 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.401 0.599 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.346 0.654 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.154 0.846 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.659 -26.375 -4.739 29.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.318 3.682 12 O -0.396 6.396 13 N -0.384 5.384 14 C 0.044 3.956 15 C -0.054 4.054 16 N -0.270 5.270 17 C -0.052 4.052 18 C -0.123 4.123 19 C -0.101 4.101 20 Cl -0.012 7.012 21 Cl -0.010 7.010 22 C -0.244 4.244 23 C -0.200 4.200 24 H 0.078 0.922 25 H 0.107 0.893 26 H 0.108 0.892 27 H 0.235 0.765 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.165 0.835 31 H 0.075 0.925 32 H 0.119 0.881 33 H 0.171 0.829 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.300 -26.110 -5.051 28.174 hybrid contribution 2.578 0.242 0.184 2.596 sum 11.878 -25.868 -4.867 28.878 Atomic orbital electron populations 1.70009 1.05945 1.27524 1.46849 1.24990 0.95026 0.99006 0.94578 0.86231 0.79237 0.81272 0.78795 1.19936 1.20840 1.19956 1.22831 0.94874 0.91688 1.58953 0.90987 1.85382 1.05028 0.96299 1.96719 1.23515 1.06473 0.95370 1.04905 1.20299 0.86481 0.86281 0.75148 1.90698 1.15413 1.85640 1.47842 1.45893 1.10122 1.04812 1.77528 1.20606 0.92733 0.80045 1.02235 1.21836 0.99315 0.99373 0.84922 1.60145 1.05657 1.51182 1.10053 1.21234 0.95764 0.99123 0.89055 1.23248 0.96845 0.93903 0.98295 1.24153 1.06602 0.90816 0.88508 1.98416 1.85046 1.50414 1.67316 1.98437 1.85847 1.95695 1.20989 1.23647 1.03282 0.93772 1.03685 1.23197 0.95597 1.01403 0.99811 0.92157 0.89313 0.89203 0.76502 0.91169 0.90809 0.83488 0.92457 0.88076 0.82882 0.88015 0.88658 0.88195 0.87500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.22 13.22 55.49 0.73 -25.48 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -15.26 9.50 30.94 0.29 -14.96 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.06 6.16 36.01 0.22 -2.83 16 11 C 0.53 9.81 7.85 -10.98 -0.09 9.73 16 12 O -0.52 -11.73 15.86 5.56 0.09 -11.64 16 13 N -0.73 -9.54 5.49 -60.29 -0.33 -9.87 16 14 C 0.17 1.89 5.72 -4.04 -0.02 1.86 16 15 C 0.04 0.30 1.86 -131.60 -0.25 0.05 16 16 N -0.64 -4.67 6.67 -101.22 -0.68 -5.35 16 17 C 0.08 0.56 5.79 -4.98 -0.03 0.53 16 18 C -0.10 -0.70 9.49 -36.11 -0.34 -1.04 16 19 C -0.05 -0.33 6.97 28.93 0.20 -0.13 16 20 Cl -0.04 -0.29 26.92 -51.86 -1.40 -1.68 16 21 Cl -0.04 -0.28 29.06 -51.86 -1.51 -1.79 16 22 C -0.20 -1.34 10.07 -26.69 -0.27 -1.61 16 23 C -0.16 -1.08 9.70 -26.69 -0.26 -1.34 16 24 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 26 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 27 H 0.40 4.33 8.27 -40.82 -0.34 3.99 16 28 H 0.07 0.81 7.91 -51.93 -0.41 0.40 16 29 H 0.07 0.92 6.51 -51.93 -0.34 0.58 16 30 H 0.35 2.09 8.57 -39.30 -0.34 1.75 16 31 H 0.06 0.40 6.01 -51.93 -0.31 0.09 16 32 H 0.10 0.87 6.67 -51.93 -0.35 0.52 16 33 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.10 0.68 8.06 -51.93 -0.42 0.27 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 364.15 15.07 5.49 5.49 Total: -1.00 -33.25 364.15 -10.05 -43.30 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -4.58 Total: 2.24 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -0.63 Total: -7.74 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: -0.27 Total: -40.70 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -2.90 Total: -3.47 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.25 -10.05 -43.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716676340.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.214 kcal (2) G-P(sol) polarization free energy of solvation -33.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds