Wall clock time and date at job start Tue Mar 31 2020 20:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00463 * 2 1 4 4 H 1.48505 * 109.47168 * 240.00162 * 3 2 1 5 5 H 1.48504 * 109.46974 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46896 * 120.00115 * 3 2 1 7 7 C 1.38804 * 119.99650 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00155 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99988 * 0.02562 * 7 2 1 10 10 C 1.81004 * 99.99828 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46820 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99943 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99780 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99773 * 180.27811 * 13 11 10 15 15 C 1.53009 * 109.46701 * 174.68186 * 14 13 11 16 16 N 1.46898 * 115.54763 * 275.65852 * 15 14 13 17 17 C 1.46904 * 111.00155 * 294.70844 * 16 15 14 18 18 C 1.50696 * 109.47080 * 181.81093 * 17 16 15 19 19 C 1.31333 * 119.99635 * 125.00312 * 18 17 16 20 20 Cl 1.73601 * 120.00397 * 359.97438 * 19 18 17 21 21 Cl 1.73604 * 119.99655 * 180.02562 * 19 18 17 22 22 C 1.53002 * 117.49799 * 129.99437 * 15 14 13 23 23 C 1.52996 * 117.50169 * 61.33059 * 15 14 13 24 24 H 0.97006 * 119.99792 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47302 * 59.99763 * 10 9 7 26 26 H 1.09002 * 109.46745 * 299.99792 * 10 9 7 27 27 H 0.97002 * 119.99962 * 359.97438 * 13 11 10 28 28 H 1.08997 * 109.46923 * 294.67098 * 14 13 11 29 29 H 1.08989 * 109.47682 * 54.67861 * 14 13 11 30 30 H 1.00893 * 111.00249 * 170.75678 * 16 15 14 31 31 H 1.08996 * 109.47135 * 301.81269 * 17 16 15 32 32 H 1.09001 * 109.47037 * 61.81134 * 17 16 15 33 33 H 1.07998 * 120.00512 * 304.99740 * 18 17 16 34 34 H 1.08996 * 117.49915 * 359.97438 * 22 15 14 35 35 H 1.08993 * 117.49738 * 145.01525 * 22 15 14 36 36 H 1.08999 * 117.50099 * 214.97797 * 23 15 14 37 37 H 1.08999 * 117.49733 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2126 5 1 1.2854 2.7465 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 16 1.1291 -2.7280 -0.0019 10 6 2.5156 -3.8915 -0.0013 11 6 1.9870 -5.3028 -0.0018 12 8 0.7907 -5.5022 -0.0019 13 7 2.8437 -6.3433 -0.0020 14 6 2.3299 -7.7152 -0.0085 15 6 3.4967 -8.6961 -0.1411 16 7 3.9541 -8.9548 -1.5128 17 6 2.9133 -9.6345 -2.2956 18 6 3.4336 -9.9223 -3.6802 19 6 3.4099 -11.1490 -4.1487 20 17 2.7798 -12.4390 -3.1727 21 17 4.0100 -11.4807 -5.7436 22 6 3.5621 -9.8549 0.8558 23 6 4.5519 -8.6926 0.9667 24 1 -0.4850 0.8401 0.0004 25 1 3.1235 -3.7319 0.8891 26 1 3.1248 -3.7311 -0.8908 27 1 3.8005 -6.1837 -0.0022 28 1 1.7972 -7.9080 0.9227 29 1 1.6493 -7.8443 -0.8499 30 1 4.8120 -9.4859 -1.5138 31 1 2.6442 -10.5707 -1.8066 32 1 2.0337 -8.9943 -2.3637 33 1 3.8259 -9.1199 -4.2874 34 1 2.7741 -9.9183 1.6063 35 1 3.9449 -10.8091 0.4939 36 1 5.5856 -8.8826 0.6778 37 1 4.4152 -7.9911 1.7898 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716676340.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:14 Heat of formation + Delta-G solvation = -30.313576 kcal Electronic energy + Delta-G solvation = -21200.804018 eV Core-core repulsion = 17577.368645 eV Total energy + Delta-G solvation = -3623.435373 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.83691 -39.59636 -38.47423 -37.58612 -35.91333 -34.99644 -34.56176 -32.15368 -31.22372 -27.85576 -27.27699 -26.15497 -23.43765 -21.62296 -21.30280 -20.86573 -19.74494 -18.17382 -17.85218 -17.40961 -16.89378 -16.85221 -16.41871 -16.08581 -16.03480 -15.64622 -15.01918 -14.66832 -14.39623 -14.37435 -14.21063 -13.82167 -13.44674 -13.23655 -13.14759 -12.84593 -12.77714 -12.60475 -12.51938 -12.43031 -12.28946 -12.17274 -11.78037 -11.66462 -11.26472 -11.11036 -10.88710 -10.25356 -10.16002 -10.01322 -9.35883 -8.64223 -8.32559 -6.10348 0.28866 0.41459 1.28783 1.35570 1.45347 1.48381 1.58180 1.66193 2.21757 2.30134 2.76927 3.01391 3.11118 3.35820 3.58320 3.67577 3.92164 3.97907 4.07825 4.24485 4.33180 4.38768 4.54852 4.58958 4.67662 4.71479 4.76911 4.82110 4.96606 5.00695 5.20815 5.43593 5.46275 5.84193 6.21683 6.32641 6.57010 7.08600 7.29146 8.76369 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.016957 B = 0.002007 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.794909 B =13945.710223 C =14784.560668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.128 4.128 11 C 0.533 3.467 12 O -0.569 6.569 13 N -0.701 5.701 14 C 0.167 3.833 15 C 0.031 3.969 16 N -0.642 5.642 17 C 0.080 3.920 18 C -0.096 4.096 19 C -0.050 4.050 20 Cl -0.041 7.041 21 Cl -0.040 7.040 22 C -0.193 4.193 23 C -0.152 4.152 24 H 0.271 0.729 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.416 0.584 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.357 0.643 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.158 0.842 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.437 -26.917 -4.571 30.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.279 4.279 11 C 0.319 3.681 12 O -0.448 6.448 13 N -0.355 5.355 14 C 0.043 3.957 15 C -0.062 4.062 16 N -0.273 5.273 17 C -0.048 4.048 18 C -0.117 4.117 19 C -0.103 4.103 20 Cl -0.013 7.013 21 Cl -0.012 7.012 22 C -0.233 4.233 23 C -0.190 4.190 24 H 0.080 0.920 25 H 0.128 0.872 26 H 0.126 0.874 27 H 0.253 0.747 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.177 0.823 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.175 0.825 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 12.141 -26.698 -4.881 29.732 hybrid contribution 1.748 0.264 0.136 1.773 sum 13.889 -26.434 -4.745 30.235 Atomic orbital electron populations 1.70179 1.07968 1.28628 1.48016 1.26132 0.95972 1.03326 0.93791 0.85011 0.77804 0.75711 0.79514 1.18664 1.20466 1.18613 1.23174 0.95344 0.92019 1.58842 0.89909 1.85564 1.10650 0.99218 1.97045 1.23354 1.03443 0.94413 1.06696 1.20038 0.86190 0.86656 0.75189 1.90688 1.17428 1.86125 1.50517 1.45647 1.10247 1.04590 1.75003 1.20689 0.94147 0.79362 1.01543 1.21551 0.99125 0.99703 0.85798 1.60081 1.05983 1.51591 1.09652 1.21152 0.95358 0.98915 0.89422 1.23226 0.96521 0.93872 0.98050 1.24164 1.06828 0.90886 0.88470 1.98416 1.85082 1.50489 1.67303 1.98438 1.85883 1.95709 1.21150 1.23679 1.03113 0.93976 1.02564 1.23280 0.96144 1.01017 0.98533 0.92028 0.87239 0.87415 0.74724 0.91489 0.92197 0.82252 0.92063 0.89638 0.82457 0.88217 0.87379 0.86500 0.87757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.13 13.22 21.65 0.29 -55.85 16 2 C 0.01 0.71 5.49 84.86 0.47 1.18 16 3 Si 1.00 43.53 29.55 68.60 2.03 45.56 16 4 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 6 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.55 -31.17 9.50 67.96 0.65 -30.53 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 9 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 10 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 11 C 0.53 19.49 7.85 87.66 0.69 20.18 16 12 O -0.57 -26.22 15.86 -3.02 -0.05 -26.27 16 13 N -0.70 -17.34 5.49 -463.06 -2.54 -19.88 16 14 C 0.17 3.58 5.72 86.38 0.49 4.07 16 15 C 0.03 0.42 1.86 3.53 0.01 0.43 16 16 N -0.64 -8.04 6.67 -474.14 -3.16 -11.20 16 17 C 0.08 1.07 5.79 85.56 0.50 1.56 16 18 C -0.10 -1.19 9.49 25.32 0.24 -0.95 16 19 C -0.05 -0.65 6.97 67.46 0.47 -0.18 16 20 Cl -0.04 -0.54 26.92 -2.72 -0.07 -0.62 16 21 Cl -0.04 -0.55 29.06 -2.72 -0.08 -0.63 16 22 C -0.19 -2.05 10.07 30.62 0.31 -1.74 16 23 C -0.15 -1.56 9.70 30.62 0.30 -1.26 16 24 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 25 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 26 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 27 H 0.42 7.90 8.27 -92.71 -0.77 7.13 16 28 H 0.07 1.51 7.91 -2.39 -0.02 1.50 16 29 H 0.06 1.50 6.51 -2.39 -0.02 1.48 16 30 H 0.36 3.31 8.57 -89.70 -0.77 2.54 16 31 H 0.06 0.77 6.01 -2.39 -0.01 0.76 16 32 H 0.09 1.44 6.67 -2.39 -0.02 1.43 16 33 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 34 H 0.10 1.14 8.06 -2.39 -0.02 1.12 16 35 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -73.73 364.15 -0.61 -74.34 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -0.41 Total: 15.99 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 4.55 Total: -11.85 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -5.42 Total: -86.93 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.05 Total: -26.27 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.15 Total: -1.24 kcal Total: -73.73 -0.61 -74.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716676340.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.031 kcal (2) G-P(sol) polarization free energy of solvation -73.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds