Wall clock time and date at job start Tue Mar 31 2020 20:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47023 * 190.94575 * 3 2 1 5 5 C 1.36935 * 119.99690 * 275.00186 * 4 3 2 6 6 H 1.08004 * 120.00465 * 37.63248 * 5 4 3 7 7 C 1.38816 * 119.99972 * 217.64113 * 5 4 3 8 8 N 1.31621 * 119.99492 * 15.71162 * 7 5 4 9 9 Si 1.86798 * 120.00378 * 195.71138 * 7 5 4 10 10 H 1.48496 * 109.46841 * 64.99793 * 9 7 5 11 11 H 1.48490 * 109.47219 * 184.99943 * 9 7 5 12 12 H 1.48495 * 109.46880 * 305.00141 * 9 7 5 13 13 S 1.65596 * 120.00379 * 94.99662 * 4 3 2 14 14 O 1.42094 * 106.40454 * 195.77113 * 13 4 3 15 15 O 1.42104 * 106.40300 * 328.69062 * 13 4 3 16 16 C 1.76200 * 107.22056 * 82.22826 * 13 4 3 17 17 C 1.38259 * 119.99776 * 342.55552 * 16 13 4 18 18 C 1.38211 * 120.00411 * 179.97438 * 17 16 13 19 19 N 1.48011 * 120.00420 * 179.97438 * 18 17 16 20 20 O 1.21802 * 120.00011 * 0.02562 * 19 18 17 21 21 O 1.21802 * 120.00357 * 179.97438 * 19 18 17 22 22 C 1.38267 * 119.99449 * 359.95364 * 18 17 16 23 23 C 1.38207 * 119.99880 * 0.02562 * 22 18 17 24 24 C 1.38212 * 120.00300 * 162.27684 * 16 13 4 25 25 C 1.50699 * 119.99805 * 0.02562 * 24 16 13 26 26 C 1.53006 * 109.46934 * 79.18339 * 25 24 16 27 27 H 4.40646 * 5.51416 * 179.97438 * 4 1 2 28 28 H 1.08998 * 109.47505 * 70.94000 * 3 2 1 29 29 H 1.09004 * 109.46762 * 310.94003 * 3 2 1 30 30 H 0.97006 * 119.99655 * 184.99993 * 8 7 5 31 31 H 1.08003 * 120.00336 * 359.97438 * 17 16 13 32 32 H 1.07995 * 119.99409 * 180.02562 * 22 18 17 33 33 H 1.08004 * 119.99815 * 180.02562 * 23 22 18 34 34 H 1.08997 * 109.47050 * 199.17799 * 25 24 16 35 35 H 1.08993 * 109.47488 * 319.18529 * 25 24 16 36 36 H 1.08997 * 109.47076 * 306.19134 * 26 25 24 37 37 H 1.08999 * 109.47396 * 66.19127 * 26 25 24 38 38 H 1.08996 * 109.46947 * 186.18955 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3570 0.2623 5 6 3.2640 2.2489 -0.7685 6 1 2.5349 2.2639 -1.5652 7 6 4.3334 3.1338 -0.7897 8 7 5.3752 2.9256 -0.0128 9 14 4.2938 4.6200 -1.9207 10 1 3.2019 5.5339 -1.4990 11 1 5.5936 5.3339 -1.8456 12 1 4.0542 4.1734 -3.3165 13 16 3.5273 1.8115 1.8052 14 8 3.5989 3.2307 1.7996 15 8 2.6693 1.0801 2.6702 16 6 5.1615 1.2321 2.1189 17 6 5.7132 0.2513 1.3158 18 6 6.9952 -0.2029 1.5614 19 7 7.5856 -1.2534 0.7019 20 8 6.9419 -1.7173 -0.2222 21 8 8.7156 -1.6533 0.9181 22 6 7.7263 0.3244 2.6098 23 6 7.1749 1.3052 3.4124 24 6 5.8939 1.7622 3.1643 25 6 5.2946 2.8354 4.0362 26 6 4.3458 2.1962 5.0522 27 1 -1.0502 -0.0004 -0.0003 28 1 3.0096 -0.3348 -0.9713 29 1 3.0096 -0.6726 0.7763 30 1 6.0895 3.5808 0.0266 31 1 5.1424 -0.1601 0.4964 32 1 8.7282 -0.0302 2.8015 33 1 7.7462 1.7173 4.2311 34 1 6.0904 3.3617 4.5633 35 1 4.7413 3.5405 3.4160 36 1 3.6149 1.5798 4.5290 37 1 4.9171 1.5754 5.7423 38 1 3.8296 2.9781 5.6091 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281262879.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:56 Heat of formation + Delta-G solvation = 16.380164 kcal Electronic energy + Delta-G solvation = -28603.757303 eV Core-core repulsion = 24544.070408 eV Total energy + Delta-G solvation = -4059.686896 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.081 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.83322 -39.31589 -36.30984 -36.22776 -36.20050 -35.08305 -33.98086 -32.79804 -31.26357 -31.09137 -30.14645 -26.68021 -26.19133 -23.94377 -23.44483 -23.09343 -21.15100 -19.66021 -18.92719 -18.39824 -18.02091 -17.20139 -17.13371 -16.07348 -15.84038 -15.80455 -15.52215 -14.79883 -14.43737 -14.21340 -13.81271 -13.67662 -13.52053 -13.42504 -12.77670 -12.66638 -12.21632 -12.05144 -11.80058 -11.50474 -11.48914 -11.25069 -11.17404 -11.14217 -10.90663 -10.83438 -10.80634 -10.63400 -10.46108 -10.35095 -10.01025 -9.95315 -9.52066 -9.23105 -9.20869 -9.03182 -8.16524 -6.60161 -4.26140 0.19706 1.09770 1.44575 1.66454 1.77891 3.19053 3.20560 3.24846 3.33266 3.41670 3.45728 4.02446 4.27062 4.51081 4.63113 4.71565 4.84354 4.85616 4.98245 5.11177 5.29420 5.39300 5.43525 5.61636 5.65029 5.72568 5.83511 5.91709 5.94199 6.05320 6.15668 6.17841 6.36954 6.43829 6.45549 6.51630 6.82529 6.92310 7.38177 7.99562 8.15655 8.18882 8.72768 9.15993 10.49985 Molecular weight = 338.08amu Principal moments of inertia in cm(-1) A = 0.009414 B = 0.006322 C = 0.005977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.508771 B = 4427.772945 C = 4683.529767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.172 4.172 3 C 0.225 3.775 4 N -0.856 5.856 5 C -0.293 4.293 6 H 0.092 0.908 7 C 0.046 3.954 8 N -0.881 5.881 9 Si 0.938 3.062 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.274 1.274 13 S 2.681 3.319 14 O -0.940 6.940 15 O -0.999 6.999 16 C -0.587 4.587 17 C 0.067 3.933 18 C -0.072 4.072 19 N 0.038 4.962 20 O -0.161 6.161 21 O -0.182 6.182 22 C -0.028 4.028 23 C -0.141 4.141 24 C 0.060 3.940 25 C -0.144 4.144 26 C -0.171 4.171 27 H 0.212 0.788 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.281 0.719 31 H 0.156 0.844 32 H 0.148 0.852 33 H 0.143 0.857 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.290 -2.532 6.028 6.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.175 4.175 3 C 0.099 3.901 4 N -0.686 5.686 5 C -0.427 4.427 6 H 0.110 0.890 7 C -0.160 4.160 8 N -0.523 5.523 9 Si 0.764 3.236 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.199 1.199 13 S 2.773 3.227 14 O -0.929 6.929 15 O -0.989 6.989 16 C -0.670 4.670 17 C 0.047 3.953 18 C -0.156 4.156 19 N 0.555 4.445 20 O -0.378 6.378 21 O -0.394 6.394 22 C -0.048 4.048 23 C -0.160 4.160 24 C 0.058 3.942 25 C -0.181 4.181 26 C -0.228 4.228 27 H 0.229 0.771 28 H 0.122 0.878 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.173 0.827 32 H 0.166 0.834 33 H 0.161 0.839 34 H 0.106 0.894 35 H 0.140 0.860 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.784 -1.557 7.096 7.307 hybrid contribution 0.996 0.224 -0.913 1.369 sum 1.780 -1.333 6.183 6.571 Atomic orbital electron populations 1.24725 0.95746 1.00914 1.02920 1.24001 0.95295 0.99493 0.98662 1.18176 0.83791 0.85277 1.02886 1.52717 1.78255 1.15774 1.21874 1.18989 1.07027 1.13956 1.02698 0.89027 1.25363 0.92560 1.00219 0.97841 1.69524 1.07667 1.35485 1.39645 0.85797 0.77736 0.80841 0.79187 1.19693 1.20952 1.19919 1.03468 0.72423 0.73789 0.72999 1.93401 1.85525 1.28411 1.85555 1.93487 1.63358 1.75280 1.66769 1.31086 1.28020 1.05799 1.02124 1.20481 0.91388 0.89507 0.93909 1.21057 0.97234 0.98540 0.98771 1.43578 1.00287 1.00345 1.00254 1.94533 1.61720 1.59509 1.22071 1.94468 1.04417 1.63841 1.76630 1.20965 0.99546 0.93390 0.90878 1.21002 0.95553 0.98389 1.01095 1.19769 0.92688 0.91184 0.90575 1.21436 1.01344 0.97075 0.98253 1.22076 0.99735 1.01780 0.99190 0.77137 0.87782 0.90419 0.90807 0.82680 0.83447 0.83905 0.89416 0.85980 0.90429 0.92175 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.82 19.25 29.55 0.57 -3.25 16 2 C -0.17 -3.32 13.64 -37.12 -0.51 -3.83 16 3 C 0.23 4.34 4.62 -6.83 -0.03 4.31 16 4 N -0.86 -19.30 2.15 -62.77 -0.13 -19.44 16 5 C -0.29 -7.05 9.22 -15.06 -0.14 -7.19 16 6 H 0.09 2.14 7.88 -52.48 -0.41 1.73 16 7 C 0.05 1.11 4.25 -17.43 -0.07 1.04 16 8 N -0.88 -21.50 9.02 55.49 0.50 -21.00 16 9 Si 0.94 20.15 29.59 -169.99 -5.03 15.12 16 10 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 13 S 2.68 60.66 3.64 -107.50 -0.39 60.27 16 14 O -0.94 -23.31 12.48 -57.17 -0.71 -24.02 16 15 O -1.00 -22.97 15.17 -57.17 -0.87 -23.84 16 16 C -0.59 -11.85 4.08 -39.58 -0.16 -12.01 16 17 C 0.07 1.32 8.45 -39.58 -0.33 0.99 16 18 C -0.07 -1.32 6.85 -79.95 -0.55 -1.87 16 19 N 0.04 0.72 4.45 33.96 0.15 0.87 16 20 O -0.16 -3.16 18.45 -29.46 -0.54 -3.70 16 21 O -0.18 -3.32 18.45 -29.46 -0.54 -3.86 16 22 C -0.03 -0.44 9.56 -39.58 -0.38 -0.82 16 23 C -0.14 -2.06 9.67 -39.59 -0.38 -2.45 16 24 C 0.06 1.05 5.13 -104.63 -0.54 0.51 16 25 C -0.14 -2.30 5.48 -27.88 -0.15 -2.45 16 26 C -0.17 -2.52 9.80 37.16 0.36 -2.16 16 27 H 0.21 2.64 7.80 -54.08 -0.42 2.22 16 28 H 0.10 1.80 8.08 -51.93 -0.42 1.38 16 29 H 0.08 1.35 7.48 -51.93 -0.39 0.96 16 30 H 0.28 6.78 8.32 -40.82 -0.34 6.45 16 31 H 0.16 3.03 5.57 -52.48 -0.29 2.74 16 32 H 0.15 1.86 7.61 -52.49 -0.40 1.46 16 33 H 0.14 1.53 8.03 -52.48 -0.42 1.10 16 34 H 0.09 1.10 8.00 -51.93 -0.42 0.68 16 35 H 0.12 2.29 5.34 -51.93 -0.28 2.01 16 36 H 0.08 1.35 5.36 -51.93 -0.28 1.07 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 340.48 15.07 5.13 5.13 Total: -1.00 -29.10 340.48 -8.46 -37.57 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -3.71 Total: 6.07 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: -2.31 Total: -29.17 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.52 Total: -39.56 kcal Atomic # 8 Polarization: -52.75 SS G_CDS: -2.67 Total: -55.42 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.03 Total: 15.12 kcal Atomic # 16 Polarization: 60.66 SS G_CDS: -0.39 Total: 60.27 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.10 -8.46 -37.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281262879.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.946 kcal (2) G-P(sol) polarization free energy of solvation -29.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds