Wall clock time and date at job start Tue Mar 31 2020 20:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86799 * 119.99968 * 2 1 4 4 H 1.48505 * 109.47072 * 270.00191 * 3 2 1 5 5 H 1.48498 * 109.47028 * 30.00137 * 3 2 1 6 6 H 1.48491 * 109.47097 * 150.00100 * 3 2 1 7 7 C 1.38797 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99993 * 0.02562 * 7 2 1 9 9 S 1.76198 * 119.99920 * 179.97438 * 7 2 1 10 10 C 1.81006 * 99.99740 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47032 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99838 * 359.97438 * 11 10 9 13 13 N 1.34768 * 120.00006 * 180.02562 * 11 10 9 14 14 C 1.46371 * 119.77524 * 359.97399 * 13 11 10 15 15 C 1.52178 * 111.20427 * 243.74159 * 14 13 11 16 16 O 1.43259 * 110.14045 * 298.81464 * 15 14 13 17 17 C 1.35509 * 115.81041 * 89.24292 * 16 15 14 18 18 C 1.38879 * 120.24093 * 108.30596 * 17 16 15 19 19 C 1.38120 * 119.86587 * 183.72070 * 18 17 16 20 20 C 1.38293 * 120.35659 * 359.12630 * 19 18 17 21 21 N 1.48005 * 120.02526 * 179.34519 * 20 19 18 22 22 O 1.21802 * 120.00162 * 0.02562 * 21 20 19 23 23 O 1.21802 * 120.00081 * 179.97438 * 21 20 19 24 24 C 1.38444 * 119.94955 * 359.36468 * 20 19 18 25 25 C 1.37646 * 119.68535 * 0.71397 * 24 20 19 26 26 C 1.46649 * 119.77146 * 180.02562 * 13 11 10 27 27 H 0.97003 * 120.00005 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47159 * 60.00146 * 10 9 7 29 29 H 1.08992 * 109.47253 * 299.99456 * 10 9 7 30 30 H 1.09003 * 109.13259 * 4.18321 * 14 13 11 31 31 H 1.08998 * 109.13261 * 123.29827 * 14 13 11 32 32 H 1.08996 * 109.36259 * 59.02218 * 15 14 13 33 33 H 1.09005 * 109.35906 * 178.61391 * 15 14 13 34 34 H 1.07997 * 120.06583 * 3.43614 * 18 17 16 35 35 H 1.08002 * 119.82362 * 179.41100 * 19 18 17 36 36 H 1.08004 * 120.15860 * 180.72643 * 24 20 19 37 37 H 1.09002 * 109.58452 * 339.79466 * 26 13 11 38 38 H 1.09006 * 109.69372 * 219.44891 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0014 9 16 3.7723 -1.2020 -0.0012 10 6 4.0866 -2.9845 -0.0025 11 6 5.5731 -3.2325 -0.0026 12 8 6.3441 -2.2963 -0.0024 13 7 6.0457 -4.4946 -0.0041 14 6 5.1108 -5.6209 -0.0050 15 6 5.2426 -6.4466 1.2665 16 8 6.5642 -6.9902 1.3669 17 6 7.4750 -6.2134 2.0020 18 6 7.9330 -6.5633 3.2655 19 6 8.8024 -5.7269 3.9380 20 6 9.2340 -4.5507 3.3525 21 7 10.1542 -3.6527 4.0856 22 8 10.5320 -3.9497 5.2048 23 8 10.5344 -2.6171 3.5693 24 6 8.8043 -4.2136 2.0803 25 6 7.9365 -5.0465 1.4109 26 6 7.4931 -4.7302 -0.0036 27 1 -0.4850 0.8401 -0.0004 28 1 3.6434 -3.4309 -0.8926 29 1 3.6441 -3.4321 0.8873 30 1 4.0923 -5.2397 -0.0794 31 1 5.3174 -6.2560 -0.8664 32 1 5.0460 -5.8127 2.1311 33 1 4.5178 -7.2605 1.2455 34 1 7.6064 -7.4854 3.7233 35 1 9.1506 -5.9950 4.9246 36 1 9.1485 -3.3017 1.6152 37 1 8.0088 -3.8372 -0.3568 38 1 7.7288 -5.5705 -0.6567 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427980310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:46 Heat of formation + Delta-G solvation = -34.566507 kcal Electronic energy + Delta-G solvation = -26534.224271 eV Core-core repulsion = 22472.328162 eV Total energy + Delta-G solvation = -4061.896109 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.081 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.39377 -41.33481 -39.45275 -38.21774 -36.73262 -35.78487 -33.20561 -32.53132 -31.85016 -29.91698 -29.69199 -26.58301 -26.43040 -25.67067 -23.90437 -22.94844 -22.02750 -20.01696 -19.11410 -18.90417 -18.60607 -17.92063 -17.69665 -17.26930 -16.42054 -16.24168 -15.99961 -15.63731 -15.06095 -14.93068 -14.47780 -14.43217 -14.06568 -13.93247 -13.70504 -13.33520 -12.90541 -12.83965 -12.53838 -12.25507 -12.06882 -11.78381 -11.74407 -11.38118 -11.34985 -11.29487 -11.08215 -10.91392 -10.71951 -10.01198 -9.88254 -9.71769 -9.50063 -9.10665 -9.05473 -8.61723 -7.04228 -6.38011 -4.11437 -0.52863 0.43087 0.94348 1.16484 2.34439 2.61000 2.63639 2.97033 3.18923 3.26836 3.43974 3.46972 3.83203 3.99121 4.21857 4.24345 4.30159 4.37340 4.49979 4.52693 4.60079 4.72795 4.80808 4.93193 5.01229 5.12032 5.15279 5.17834 5.26316 5.33453 5.36863 5.52686 5.58792 5.69267 5.76656 6.14433 6.14970 6.65516 7.08098 7.45098 7.84615 8.12898 8.30917 9.07990 10.71017 Molecular weight = 338.08amu Principal moments of inertia in cm(-1) A = 0.013113 B = 0.003250 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.823430 B = 8613.082107 C = 9938.974905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.235 1.235 7 C -0.524 4.524 8 H 0.088 0.912 9 S -0.138 6.138 10 C -0.125 4.125 11 C 0.532 3.468 12 O -0.506 6.506 13 N -0.619 5.619 14 C 0.073 3.927 15 C 0.048 3.952 16 O -0.321 6.321 17 C 0.165 3.835 18 C -0.137 4.137 19 C -0.037 4.037 20 C -0.057 4.057 21 N 0.031 4.969 22 O -0.164 6.164 23 O -0.154 6.154 24 C -0.015 4.015 25 C -0.136 4.136 26 C 0.158 3.842 27 H 0.272 0.728 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.121 0.879 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.162 0.838 37 H 0.108 0.892 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.482 -18.724 3.434 23.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.112 4.112 3 Si 0.680 3.320 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.159 1.159 7 C -0.672 4.672 8 H 0.106 0.894 9 S 0.088 5.912 10 C -0.275 4.275 11 C 0.320 3.680 12 O -0.379 6.379 13 N -0.354 5.354 14 C -0.050 4.050 15 C -0.026 4.026 16 O -0.237 6.237 17 C 0.120 3.880 18 C -0.156 4.156 19 C -0.056 4.056 20 C -0.140 4.140 21 N 0.550 4.450 22 O -0.378 6.378 23 O -0.371 6.371 24 C -0.035 4.035 25 C -0.139 4.139 26 C 0.035 3.965 27 H 0.082 0.918 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.129 0.871 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.139 0.861 34 H 0.173 0.827 35 H 0.176 0.824 36 H 0.179 0.821 37 H 0.126 0.874 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 14.999 -17.826 2.979 23.486 hybrid contribution -0.699 -0.029 0.285 0.755 sum 14.300 -17.854 3.264 23.107 Atomic orbital electron populations 1.69931 1.05913 1.27908 1.47704 1.24701 0.94450 0.98983 0.93030 0.86753 0.81898 0.83294 0.80036 1.19095 1.19802 1.15946 1.22273 0.88060 0.97556 1.59273 0.89359 1.84893 1.09539 0.99347 1.97409 1.23338 0.93563 1.04967 1.05627 1.20487 0.90945 0.81697 0.74844 1.90717 1.58668 1.41473 1.47043 1.47910 1.05587 1.06057 1.75889 1.22118 0.95608 0.88672 0.98645 1.23369 0.81199 0.99360 0.98710 1.86100 1.19347 1.42730 1.75556 1.18915 0.90415 0.88770 0.89887 1.21270 0.99891 1.01563 0.92860 1.20910 0.93427 0.90398 1.00843 1.21147 1.02322 0.94994 0.95579 1.43519 0.99820 1.00916 1.00710 1.94526 1.59648 1.79125 1.04549 1.94585 1.59192 1.12780 1.70565 1.20790 0.92467 0.99362 0.90896 1.20836 0.99151 0.94736 0.99199 1.20505 0.81457 1.03975 0.90523 0.91822 0.88201 0.88539 0.87143 0.89568 0.91157 0.86102 0.82731 0.82412 0.82059 0.87381 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.81 13.97 55.49 0.78 -25.03 16 2 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 3 Si 0.86 21.29 27.74 -169.99 -4.71 16.57 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 7 C -0.52 -14.49 10.04 30.94 0.31 -14.18 16 8 H 0.09 2.52 8.03 -52.49 -0.42 2.10 16 9 S -0.14 -3.34 18.55 -107.50 -1.99 -5.34 16 10 C -0.12 -2.19 4.46 36.01 0.16 -2.03 16 11 C 0.53 8.58 7.69 -10.99 -0.08 8.50 16 12 O -0.51 -10.02 15.29 5.56 0.08 -9.93 16 13 N -0.62 -7.07 2.69 -175.02 -0.47 -7.54 16 14 C 0.07 0.58 6.16 -4.53 -0.03 0.55 16 15 C 0.05 0.32 6.68 36.74 0.25 0.57 16 16 O -0.32 -2.57 9.90 -18.22 -0.18 -2.75 16 17 C 0.17 1.45 5.61 -39.17 -0.22 1.23 16 18 C -0.14 -1.01 10.00 -39.39 -0.39 -1.40 16 19 C -0.04 -0.31 9.54 -39.60 -0.38 -0.69 16 20 C -0.06 -0.63 6.86 -79.86 -0.55 -1.18 16 21 N 0.03 0.41 4.45 34.01 0.15 0.57 16 22 O -0.16 -2.21 18.45 -29.46 -0.54 -2.75 16 23 O -0.15 -2.27 18.46 -29.46 -0.54 -2.82 16 24 C -0.02 -0.17 9.21 -39.72 -0.37 -0.54 16 25 C -0.14 -1.36 5.49 -104.23 -0.57 -1.94 16 26 C 0.16 1.59 5.66 -4.68 -0.03 1.56 16 27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.10 1.59 7.69 -51.92 -0.40 1.19 16 29 H 0.10 1.55 7.85 -51.92 -0.41 1.14 16 30 H 0.11 0.85 5.71 -51.93 -0.30 0.56 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.53 7.88 -51.93 -0.41 0.13 16 33 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.16 0.74 8.06 -52.49 -0.42 0.31 16 35 H 0.16 1.04 7.60 -52.49 -0.40 0.64 16 36 H 0.16 1.81 7.57 -52.48 -0.40 1.41 16 37 H 0.11 1.20 6.96 -51.93 -0.36 0.83 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 343.43 15.07 5.18 5.18 Total: -1.00 -34.40 343.43 -8.19 -42.59 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -3.94 Total: -1.87 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -2.00 Total: -6.87 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: 0.46 Total: -32.01 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -1.18 Total: -18.25 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.71 Total: 16.57 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -1.99 Total: -5.34 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.40 -8.19 -42.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427980310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.024 kcal (2) G-P(sol) polarization free energy of solvation -34.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds