Wall clock time and date at job start Tue Mar 31 2020 20:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86799 * 119.99968 * 2 1 4 4 H 1.48505 * 109.47072 * 270.00191 * 3 2 1 5 5 H 1.48498 * 109.47028 * 30.00137 * 3 2 1 6 6 H 1.48491 * 109.47097 * 150.00100 * 3 2 1 7 7 C 1.38797 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99993 * 0.02562 * 7 2 1 9 9 S 1.76198 * 119.99920 * 179.97438 * 7 2 1 10 10 C 1.81006 * 99.99740 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47032 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99838 * 359.97438 * 11 10 9 13 13 N 1.34768 * 120.00006 * 180.02562 * 11 10 9 14 14 C 1.46371 * 119.77524 * 359.97399 * 13 11 10 15 15 C 1.52178 * 111.20427 * 243.74159 * 14 13 11 16 16 O 1.43259 * 110.14045 * 298.81464 * 15 14 13 17 17 C 1.35509 * 115.81041 * 89.24292 * 16 15 14 18 18 C 1.38879 * 120.24093 * 108.30596 * 17 16 15 19 19 C 1.38120 * 119.86587 * 183.72070 * 18 17 16 20 20 C 1.38293 * 120.35659 * 359.12630 * 19 18 17 21 21 N 1.48005 * 120.02526 * 179.34519 * 20 19 18 22 22 O 1.21802 * 120.00162 * 0.02562 * 21 20 19 23 23 O 1.21802 * 120.00081 * 179.97438 * 21 20 19 24 24 C 1.38444 * 119.94955 * 359.36468 * 20 19 18 25 25 C 1.37646 * 119.68535 * 0.71397 * 24 20 19 26 26 C 1.46649 * 119.77146 * 180.02562 * 13 11 10 27 27 H 0.97003 * 120.00005 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47159 * 60.00146 * 10 9 7 29 29 H 1.08992 * 109.47253 * 299.99456 * 10 9 7 30 30 H 1.09003 * 109.13259 * 4.18321 * 14 13 11 31 31 H 1.08998 * 109.13261 * 123.29827 * 14 13 11 32 32 H 1.08996 * 109.36259 * 59.02218 * 15 14 13 33 33 H 1.09005 * 109.35906 * 178.61391 * 15 14 13 34 34 H 1.07997 * 120.06583 * 3.43614 * 18 17 16 35 35 H 1.08002 * 119.82362 * 179.41100 * 19 18 17 36 36 H 1.08004 * 120.15860 * 180.72643 * 24 20 19 37 37 H 1.09002 * 109.58452 * 339.79466 * 26 13 11 38 38 H 1.09006 * 109.69372 * 219.44891 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0014 9 16 3.7723 -1.2020 -0.0012 10 6 4.0866 -2.9845 -0.0025 11 6 5.5731 -3.2325 -0.0026 12 8 6.3441 -2.2963 -0.0024 13 7 6.0457 -4.4946 -0.0041 14 6 5.1108 -5.6209 -0.0050 15 6 5.2426 -6.4466 1.2665 16 8 6.5642 -6.9902 1.3669 17 6 7.4750 -6.2134 2.0020 18 6 7.9330 -6.5633 3.2655 19 6 8.8024 -5.7269 3.9380 20 6 9.2340 -4.5507 3.3525 21 7 10.1542 -3.6527 4.0856 22 8 10.5320 -3.9497 5.2048 23 8 10.5344 -2.6171 3.5693 24 6 8.8043 -4.2136 2.0803 25 6 7.9365 -5.0465 1.4109 26 6 7.4931 -4.7302 -0.0036 27 1 -0.4850 0.8401 -0.0004 28 1 3.6434 -3.4309 -0.8926 29 1 3.6441 -3.4321 0.8873 30 1 4.0923 -5.2397 -0.0794 31 1 5.3174 -6.2560 -0.8664 32 1 5.0460 -5.8127 2.1311 33 1 4.5178 -7.2605 1.2455 34 1 7.6064 -7.4854 3.7233 35 1 9.1506 -5.9950 4.9246 36 1 9.1485 -3.3017 1.6152 37 1 8.0088 -3.8372 -0.3568 38 1 7.7288 -5.5705 -0.6567 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427980310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:45 Heat of formation + Delta-G solvation = -56.267206 kcal Electronic energy + Delta-G solvation = -26535.165284 eV Core-core repulsion = 22472.328162 eV Total energy + Delta-G solvation = -4062.837122 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.081 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.35520 -42.13885 -40.55111 -38.93095 -37.76002 -36.80312 -34.69209 -33.99504 -32.60112 -31.17136 -30.46071 -27.94882 -27.37546 -27.31887 -24.64955 -23.71726 -22.85216 -21.11251 -20.05188 -19.92906 -19.70004 -19.23638 -18.68928 -18.42098 -17.44193 -17.19104 -17.06534 -16.96075 -16.35581 -15.81328 -15.74902 -15.16754 -15.12860 -15.01744 -14.84984 -14.78114 -14.05188 -13.72261 -13.58572 -13.38809 -13.13920 -13.06060 -12.98029 -12.79621 -12.64929 -12.45645 -12.37906 -12.29235 -11.90691 -11.60402 -11.19585 -11.08375 -10.54076 -10.50720 -10.28854 -10.02384 -9.03719 -8.54085 -6.24968 -1.41197 -0.28829 0.05570 0.27686 0.93347 1.28596 1.37851 1.42053 1.48720 1.73455 2.02192 2.21904 2.49891 2.64234 2.84792 3.08156 3.28614 3.40580 3.52174 3.67520 3.83576 3.87860 4.03075 4.05804 4.14578 4.19563 4.35264 4.41803 4.45038 4.53625 4.62261 4.63692 4.76530 4.87335 4.97844 5.20077 5.26414 5.68620 5.99047 6.06598 6.09565 6.39004 6.91626 6.93111 8.57947 Molecular weight = 338.08amu Principal moments of inertia in cm(-1) A = 0.013113 B = 0.003250 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.823430 B = 8613.082107 C = 9938.974905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.049 3.951 3 Si 0.908 3.092 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.240 1.240 7 C -0.525 4.525 8 H 0.068 0.932 9 S -0.183 6.183 10 C -0.107 4.107 11 C 0.534 3.466 12 O -0.553 6.553 13 N -0.605 5.605 14 C 0.062 3.938 15 C 0.050 3.950 16 O -0.317 6.317 17 C 0.171 3.829 18 C -0.122 4.122 19 C -0.026 4.026 20 C -0.075 4.075 21 N 0.032 4.968 22 O -0.151 6.151 23 O -0.210 6.210 24 C -0.028 4.028 25 C -0.146 4.146 26 C 0.157 3.843 27 H 0.277 0.723 28 H 0.120 0.880 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.062 0.938 33 H 0.159 0.841 34 H 0.192 0.808 35 H 0.181 0.819 36 H 0.145 0.855 37 H 0.090 0.910 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.471 -21.958 3.879 26.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.156 4.156 3 Si 0.731 3.269 4 H -0.187 1.187 5 H -0.185 1.185 6 H -0.164 1.164 7 C -0.673 4.673 8 H 0.086 0.914 9 S 0.044 5.956 10 C -0.258 4.258 11 C 0.321 3.679 12 O -0.431 6.431 13 N -0.339 5.339 14 C -0.060 4.060 15 C -0.024 4.024 16 O -0.233 6.233 17 C 0.126 3.874 18 C -0.141 4.141 19 C -0.045 4.045 20 C -0.159 4.159 21 N 0.547 4.453 22 O -0.373 6.373 23 O -0.414 6.414 24 C -0.048 4.048 25 C -0.148 4.148 26 C 0.035 3.965 27 H 0.086 0.914 28 H 0.138 0.862 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.080 0.920 33 H 0.177 0.823 34 H 0.209 0.791 35 H 0.198 0.802 36 H 0.163 0.837 37 H 0.108 0.892 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 14.999 -21.040 3.361 26.057 hybrid contribution -0.717 0.657 0.163 0.986 sum 14.282 -20.383 3.525 25.138 Atomic orbital electron populations 1.70001 1.07158 1.28984 1.49117 1.25475 0.95184 1.01985 0.92994 0.85950 0.80645 0.80114 0.80196 1.18687 1.18466 1.16433 1.22419 0.89906 0.96771 1.58157 0.91387 1.84897 1.06867 1.06245 1.97582 1.23310 0.95379 0.99590 1.07527 1.20208 0.89811 0.82913 0.74926 1.90710 1.59276 1.43375 1.49691 1.47874 1.06886 1.05333 1.73780 1.22500 0.94884 0.87814 1.00752 1.23546 0.81146 1.00380 0.97372 1.86125 1.19596 1.42195 1.75388 1.19061 0.90182 0.87952 0.90222 1.21620 0.98344 1.02157 0.91937 1.21256 0.92601 0.89026 1.01665 1.21311 1.02994 0.95742 0.95810 1.43858 0.99847 1.00949 1.00658 1.94476 1.59227 1.78746 1.04830 1.94589 1.61355 1.14393 1.71091 1.20734 0.93446 0.99335 0.91319 1.20792 0.99458 0.95471 0.99105 1.20638 0.80188 1.04326 0.91366 0.91363 0.86166 0.86675 0.86801 0.86908 0.91952 0.82339 0.79112 0.80204 0.83745 0.89198 0.85553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.25 13.97 21.65 0.30 -53.95 16 2 C 0.05 2.82 5.50 84.86 0.47 3.29 16 3 Si 0.91 44.30 27.74 68.60 1.90 46.21 16 4 H -0.26 -12.49 7.11 99.48 0.71 -11.79 16 5 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.24 -11.82 6.74 99.48 0.67 -11.14 16 7 C -0.52 -29.26 10.04 67.95 0.68 -28.58 16 8 H 0.07 3.94 8.03 -2.91 -0.02 3.91 16 9 S -0.18 -8.86 18.55 -56.49 -1.05 -9.90 16 10 C -0.11 -3.64 4.46 71.24 0.32 -3.32 16 11 C 0.53 16.74 7.69 87.66 0.67 17.41 16 12 O -0.55 -22.30 15.29 -3.03 -0.05 -22.34 16 13 N -0.61 -12.51 2.69 -826.04 -2.22 -14.74 16 14 C 0.06 0.74 6.16 86.13 0.53 1.27 16 15 C 0.05 0.43 6.68 71.71 0.48 0.91 16 16 O -0.32 -3.55 9.90 -88.11 -0.87 -4.43 16 17 C 0.17 2.40 5.61 22.54 0.13 2.53 16 18 C -0.12 -1.28 10.00 22.40 0.22 -1.06 16 19 C -0.03 -0.37 9.54 22.25 0.21 -0.16 16 20 C -0.08 -1.62 6.86 36.44 0.25 -1.37 16 21 N 0.03 0.89 4.45 -46.32 -0.21 0.68 16 22 O -0.15 -4.02 18.45 18.88 0.35 -3.67 16 23 O -0.21 -6.65 18.46 18.88 0.35 -6.30 16 24 C -0.03 -0.63 9.21 22.18 0.20 -0.43 16 25 C -0.15 -2.69 5.49 -19.61 -0.11 -2.79 16 26 C 0.16 2.91 5.66 85.89 0.49 3.40 16 27 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 28 H 0.12 3.60 7.69 -2.40 -0.02 3.58 16 29 H 0.12 3.48 7.85 -2.40 -0.02 3.46 16 30 H 0.11 1.32 5.71 -2.39 -0.01 1.31 16 31 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.70 7.88 -2.39 -0.02 0.68 16 33 H 0.16 0.30 8.14 -2.38 -0.02 0.28 16 34 H 0.19 0.68 8.06 -2.91 -0.02 0.66 16 35 H 0.18 1.72 7.60 -2.91 -0.02 1.70 16 36 H 0.14 3.61 7.57 -2.91 -0.02 3.59 16 37 H 0.09 2.03 6.96 -2.39 -0.02 2.02 16 38 H 0.13 1.60 8.14 -2.38 -0.02 1.58 16 Total: -1.00 -77.62 343.43 4.13 -73.49 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: 1.08 Total: 3.86 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 4.55 Total: -8.91 kcal Atomic # 7 Polarization: -65.88 SS G_CDS: -2.13 Total: -68.00 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -0.22 Total: -36.74 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.90 Total: 46.21 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.05 Total: -9.90 kcal Total: -77.62 4.13 -73.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427980310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.225 kcal (2) G-P(sol) polarization free energy of solvation -77.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds