Wall clock time and date at job start Tue Mar 31 2020 20:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32024 * 124.80547 * 2 1 4 4 C 1.41127 * 115.76305 * 179.97438 * 3 2 1 5 5 S 1.77282 * 137.57002 * 180.02562 * 4 3 2 6 6 C 1.75315 * 91.41669 * 179.97438 * 5 4 3 7 7 C 1.32028 * 110.39034 * 0.02562 * 6 5 4 8 8 C 1.50700 * 122.11532 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.46869 * 265.01933 * 8 7 6 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72354 * 9 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 8 13 13 C 1.50694 * 109.47550 * 180.02562 * 12 11 9 14 14 O 1.21297 * 119.99707 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00262 * 180.02562 * 13 12 11 16 16 C 1.37096 * 119.99935 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00186 * 0.02562 * 16 15 13 18 18 C 1.38957 * 119.99926 * 179.97438 * 16 15 13 19 19 N 1.31413 * 119.99843 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99989 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47145 * 89.99765 * 20 18 16 22 22 H 1.48496 * 109.46738 * 209.99758 * 20 18 16 23 23 H 1.48503 * 109.46936 * 329.99329 * 20 18 16 24 24 C 1.36758 * 113.16085 * 0.26729 * 4 3 2 25 25 S 1.75323 * 124.80306 * 179.97438 * 2 1 3 26 26 H 1.08998 * 109.46914 * 90.00157 * 1 2 3 27 27 H 1.08997 * 109.47344 * 210.00320 * 1 2 3 28 28 H 1.09000 * 109.47013 * 330.01090 * 1 2 3 29 29 H 1.07997 * 122.11729 * 359.97438 * 3 2 1 30 30 H 1.08001 * 124.80621 * 179.97438 * 6 5 4 31 31 H 1.09004 * 109.47210 * 145.02226 * 8 7 6 32 32 H 1.08994 * 109.47551 * 25.01878 * 8 7 6 33 33 H 0.97000 * 120.00317 * 0.28382 * 11 9 8 34 34 H 1.08998 * 109.47134 * 300.00670 * 12 11 9 35 35 H 1.09002 * 109.46857 * 59.99862 * 12 11 9 36 36 H 0.96996 * 120.00282 * 0.02562 * 15 13 12 37 37 H 0.97000 * 120.00127 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.0840 0.0000 4 6 3.6544 0.8622 0.0006 5 16 5.1346 1.8378 0.0014 6 6 6.1353 0.3983 0.0024 7 6 5.3817 -0.6858 0.0015 8 6 5.9724 -2.0722 0.0026 9 6 6.0578 -2.5829 -1.4127 10 8 5.6770 -1.8892 -2.3318 11 7 6.5631 -3.8081 -1.6576 12 6 6.6517 -4.3022 -3.0339 13 6 7.2469 -5.6866 -3.0334 14 8 7.5653 -6.2094 -1.9862 15 7 7.4255 -6.3439 -4.1964 16 6 7.9665 -7.6036 -4.1957 17 1 8.2492 -8.0694 -3.2633 18 6 8.1501 -8.2815 -5.3947 19 7 8.6691 -9.4888 -5.3942 20 14 7.6604 -7.4761 -7.0075 21 1 8.8129 -6.7126 -7.5495 22 1 7.2580 -8.5226 -7.9811 23 1 6.5208 -6.5530 -6.7738 24 6 3.9880 -0.4640 -0.0048 25 16 2.5077 -1.4396 0.0006 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5137 29 1 1.8373 2.0776 -0.0004 30 1 7.2153 0.3983 0.0027 31 1 5.3394 -2.7364 0.5909 32 1 6.9709 -2.0414 0.4386 33 1 6.8680 -4.3629 -0.9226 34 1 5.6546 -4.3360 -3.4728 35 1 7.2839 -3.6347 -3.6196 36 1 7.1712 -5.9258 -5.0338 37 1 8.7969 -9.9622 -6.2311 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879967310.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:46 Heat of formation + Delta-G solvation = -19.766221 kcal Electronic energy + Delta-G solvation = -22929.932218 eV Core-core repulsion = 19311.430768 eV Total energy + Delta-G solvation = -3618.501449 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 338.055 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.00924 -38.93310 -38.20851 -35.89138 -34.52389 -33.75808 -31.84618 -31.62502 -29.59959 -27.35726 -26.52337 -24.39336 -23.52746 -21.42131 -20.19552 -19.64772 -19.06647 -18.71248 -17.97660 -17.15576 -16.43426 -15.75758 -15.53241 -15.40413 -14.85544 -14.55778 -14.51577 -14.38072 -14.15023 -13.89463 -13.78866 -13.24508 -13.01442 -12.75234 -12.55812 -12.50234 -12.28435 -12.21748 -12.05447 -11.80007 -11.25432 -11.20679 -11.05037 -10.80761 -10.66153 -10.08607 -9.86340 -9.72111 -9.36797 -8.91584 -8.80089 -8.50222 -8.32803 -7.80626 -6.42909 -3.95548 0.30507 0.92791 1.51649 1.60162 1.86092 2.07611 2.34382 2.72055 2.97995 3.02677 3.10797 3.36973 3.53645 4.01682 4.41935 4.52190 4.52854 4.65761 4.95175 4.95339 5.06986 5.12206 5.13779 5.17143 5.25962 5.35050 5.51853 5.65343 5.74136 5.76159 5.78973 5.87221 5.99264 6.07855 6.53201 7.41714 7.69561 7.97994 8.33006 8.43829 8.79377 9.27530 9.60822 10.69197 Molecular weight = 338.05amu Principal moments of inertia in cm(-1) A = 0.018627 B = 0.002312 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.835426 B =12108.145936 C =12671.970452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.168 4.168 3 C -0.099 4.099 4 C -0.166 4.166 5 S 0.135 5.865 6 C -0.188 4.188 7 C -0.035 4.035 8 C -0.089 4.089 9 C 0.512 3.488 10 O -0.537 6.537 11 N -0.708 5.708 12 C 0.107 3.893 13 C 0.438 3.562 14 O -0.579 6.579 15 N -0.576 5.576 16 C -0.310 4.310 17 H 0.122 0.878 18 C 0.045 3.955 19 N -0.874 5.874 20 Si 0.879 3.121 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.267 1.267 24 C -0.148 4.148 25 S 0.147 5.853 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.140 0.860 30 H 0.173 0.827 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.412 0.588 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.374 0.626 37 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.607 22.619 11.506 28.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.288 4.288 3 C -0.131 4.131 4 C -0.292 4.292 5 S 0.398 5.602 6 C -0.325 4.325 7 C -0.049 4.049 8 C -0.131 4.131 9 C 0.297 3.703 10 O -0.414 6.414 11 N -0.363 5.363 12 C -0.021 4.021 13 C 0.224 3.776 14 O -0.464 6.464 15 N -0.214 5.214 16 C -0.439 4.439 17 H 0.139 0.861 18 C -0.159 4.159 19 N -0.513 5.513 20 Si 0.705 3.295 21 H -0.194 1.194 22 H -0.199 1.199 23 H -0.192 1.192 24 C -0.274 4.274 25 S 0.409 5.591 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.158 0.842 30 H 0.190 0.810 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.250 0.750 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.208 0.792 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.573 22.565 11.408 28.239 hybrid contribution -0.012 0.124 -1.210 1.216 sum -12.585 22.689 10.198 27.878 Atomic orbital electron populations 1.20368 0.87228 1.03361 1.03137 1.24010 1.00273 0.95872 1.08609 1.19178 0.89285 0.99632 1.05033 1.22785 0.98074 0.95696 1.12628 1.83979 0.93087 1.07078 1.76088 1.24922 1.03592 0.94736 1.09246 1.17483 0.89364 0.95062 1.03032 1.20451 1.03765 0.93389 0.95530 1.20361 0.77703 0.81264 0.90927 1.90719 1.48020 1.56659 1.45972 1.45687 1.63766 1.17215 1.09632 1.20965 1.02094 0.94821 0.84216 1.19634 0.85693 0.87415 0.84886 1.90539 1.55831 1.68967 1.31022 1.42129 1.56105 1.16562 1.06557 1.19442 1.37623 0.89674 0.97151 0.86062 1.25070 0.96965 0.95688 0.98170 1.69617 1.42328 1.11325 1.27983 0.86674 0.79307 0.79773 0.83767 1.19380 1.19948 1.19229 1.22629 0.97410 0.95823 1.11514 1.84255 0.92879 1.06589 1.75365 0.90390 0.90976 0.90346 0.84225 0.80998 0.87838 0.87164 0.74963 0.89771 0.89753 0.79241 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.35 36.01 0.37 -0.15 16 2 C -0.17 -1.63 6.42 -36.22 -0.23 -1.86 16 3 C -0.10 -1.00 10.02 -40.40 -0.40 -1.41 16 4 C -0.17 -1.97 6.96 -39.02 -0.27 -2.24 16 5 S 0.13 1.37 23.34 -107.50 -2.51 -1.14 16 6 C -0.19 -2.00 10.79 28.81 0.31 -1.68 16 7 C -0.03 -0.42 4.32 -105.45 -0.46 -0.87 16 8 C -0.09 -0.98 5.95 -29.03 -0.17 -1.15 16 9 C 0.51 7.56 7.82 -10.98 -0.09 7.47 16 10 O -0.54 -9.70 16.03 5.55 0.09 -9.61 16 11 N -0.71 -10.93 5.53 -61.47 -0.34 -11.27 16 12 C 0.11 1.84 6.15 -5.20 -0.03 1.80 16 13 C 0.44 9.53 7.85 -10.99 -0.09 9.44 16 14 O -0.58 -14.43 15.24 5.54 0.08 -14.34 16 15 N -0.58 -13.33 5.09 -10.96 -0.06 -13.39 16 16 C -0.31 -8.51 10.16 -14.93 -0.15 -8.66 16 17 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 18 C 0.05 1.21 5.50 -17.46 -0.10 1.12 16 19 N -0.87 -24.85 13.96 55.50 0.77 -24.07 16 20 Si 0.88 18.96 27.74 -169.99 -4.71 14.25 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 24 C -0.15 -1.87 6.77 -39.02 -0.26 -2.14 16 25 S 0.15 1.66 23.32 -107.50 -2.51 -0.84 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.11 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.41 6.16 7.44 -40.82 -0.30 5.85 16 34 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.37 7.67 5.76 -40.82 -0.24 7.43 16 37 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 351.98 15.07 5.30 5.30 Total: -1.00 -33.69 351.98 -9.34 -43.03 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -3.90 Total: 12.42 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -1.57 Total: -0.33 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.38 Total: -48.73 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: 0.17 Total: -23.95 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.71 Total: 14.25 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -5.02 Total: -1.99 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.69 -9.34 -43.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879967310.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.268 kcal (2) G-P(sol) polarization free energy of solvation -33.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds