Wall clock time and date at job start Tue Mar 31 2020 20:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32024 * 124.80547 * 2 1 4 4 C 1.41127 * 115.76305 * 179.97438 * 3 2 1 5 5 S 1.77282 * 137.57002 * 180.02562 * 4 3 2 6 6 C 1.75315 * 91.41669 * 179.97438 * 5 4 3 7 7 C 1.32028 * 110.39034 * 0.02562 * 6 5 4 8 8 C 1.50700 * 122.11532 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.46869 * 265.01933 * 8 7 6 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72354 * 9 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 8 13 13 C 1.50694 * 109.47550 * 180.02562 * 12 11 9 14 14 O 1.21297 * 119.99707 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00262 * 180.02562 * 13 12 11 16 16 C 1.37096 * 119.99935 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00186 * 0.02562 * 16 15 13 18 18 C 1.38957 * 119.99926 * 179.97438 * 16 15 13 19 19 N 1.31413 * 119.99843 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99989 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47145 * 89.99765 * 20 18 16 22 22 H 1.48496 * 109.46738 * 209.99758 * 20 18 16 23 23 H 1.48503 * 109.46936 * 329.99329 * 20 18 16 24 24 C 1.36758 * 113.16085 * 0.26729 * 4 3 2 25 25 S 1.75323 * 124.80306 * 179.97438 * 2 1 3 26 26 H 1.08998 * 109.46914 * 90.00157 * 1 2 3 27 27 H 1.08997 * 109.47344 * 210.00320 * 1 2 3 28 28 H 1.09000 * 109.47013 * 330.01090 * 1 2 3 29 29 H 1.07997 * 122.11729 * 359.97438 * 3 2 1 30 30 H 1.08001 * 124.80621 * 179.97438 * 6 5 4 31 31 H 1.09004 * 109.47210 * 145.02226 * 8 7 6 32 32 H 1.08994 * 109.47551 * 25.01878 * 8 7 6 33 33 H 0.97000 * 120.00317 * 0.28382 * 11 9 8 34 34 H 1.08998 * 109.47134 * 300.00670 * 12 11 9 35 35 H 1.09002 * 109.46857 * 59.99862 * 12 11 9 36 36 H 0.96996 * 120.00282 * 0.02562 * 15 13 12 37 37 H 0.97000 * 120.00127 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.0840 0.0000 4 6 3.6544 0.8622 0.0006 5 16 5.1346 1.8378 0.0014 6 6 6.1353 0.3983 0.0024 7 6 5.3817 -0.6858 0.0015 8 6 5.9724 -2.0722 0.0026 9 6 6.0578 -2.5829 -1.4127 10 8 5.6770 -1.8892 -2.3318 11 7 6.5631 -3.8081 -1.6576 12 6 6.6517 -4.3022 -3.0339 13 6 7.2469 -5.6866 -3.0334 14 8 7.5653 -6.2094 -1.9862 15 7 7.4255 -6.3439 -4.1964 16 6 7.9665 -7.6036 -4.1957 17 1 8.2492 -8.0694 -3.2633 18 6 8.1501 -8.2815 -5.3947 19 7 8.6691 -9.4888 -5.3942 20 14 7.6604 -7.4761 -7.0075 21 1 8.8129 -6.7126 -7.5495 22 1 7.2580 -8.5226 -7.9811 23 1 6.5208 -6.5530 -6.7738 24 6 3.9880 -0.4640 -0.0048 25 16 2.5077 -1.4396 0.0006 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5137 29 1 1.8373 2.0776 -0.0004 30 1 7.2153 0.3983 0.0027 31 1 5.3394 -2.7364 0.5909 32 1 6.9709 -2.0414 0.4386 33 1 6.8680 -4.3629 -0.9226 34 1 5.6546 -4.3360 -3.4728 35 1 7.2839 -3.6347 -3.6196 36 1 7.1712 -5.9258 -5.0338 37 1 8.7969 -9.9622 -6.2311 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879967310.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:45 Heat of formation + Delta-G solvation = -43.154772 kcal Electronic energy + Delta-G solvation = -22930.946421 eV Core-core repulsion = 19311.430768 eV Total energy + Delta-G solvation = -3619.515653 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 338.055 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.20476 -40.27478 -39.47634 -36.70511 -36.26446 -35.29454 -33.84738 -32.39853 -30.61394 -28.74373 -27.23791 -26.18020 -24.34248 -22.37988 -21.48567 -21.25872 -20.51543 -19.80763 -18.93774 -18.43379 -17.42889 -17.23091 -16.89612 -16.79276 -16.49995 -15.77996 -15.46925 -15.19537 -15.09589 -14.90970 -14.89390 -14.72569 -14.30657 -14.01456 -13.85021 -13.78382 -13.34527 -13.20804 -12.98234 -12.83962 -12.71795 -12.45965 -12.01762 -11.97239 -11.80140 -11.60973 -11.59384 -11.05655 -10.67174 -10.34711 -10.19553 -10.18107 -9.28478 -8.61026 -8.46638 -6.08543 -0.48953 0.12865 0.75954 0.81200 1.05522 1.26014 1.29879 1.32684 1.42507 1.51544 1.57892 1.78529 2.14167 2.19567 2.88490 3.09554 3.66653 3.73149 3.87402 3.94564 4.06195 4.28231 4.34061 4.40940 4.41413 4.44947 4.52626 4.64965 4.73183 4.96497 5.05629 5.14173 5.20271 5.24745 5.36762 5.47510 5.87189 6.46475 6.50153 6.77146 7.15049 7.28861 7.76592 8.69751 Molecular weight = 338.05amu Principal moments of inertia in cm(-1) A = 0.018627 B = 0.002312 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.835426 B =12108.145936 C =12671.970452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.160 4.160 3 C -0.112 4.112 4 C -0.185 4.185 5 S 0.159 5.841 6 C -0.191 4.191 7 C -0.057 4.057 8 C -0.082 4.082 9 C 0.517 3.483 10 O -0.569 6.569 11 N -0.710 5.710 12 C 0.118 3.882 13 C 0.446 3.554 14 O -0.613 6.613 15 N -0.579 5.579 16 C -0.331 4.331 17 H 0.064 0.936 18 C -0.008 4.008 19 N -0.925 5.925 20 Si 0.958 3.042 21 H -0.256 1.256 22 H -0.273 1.273 23 H -0.234 1.234 24 C -0.172 4.172 25 S 0.115 5.885 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.162 0.838 30 H 0.195 0.805 31 H 0.115 0.885 32 H 0.140 0.860 33 H 0.415 0.585 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.391 0.609 37 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.871 25.412 10.710 30.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.280 4.280 3 C -0.144 4.144 4 C -0.311 4.311 5 S 0.422 5.578 6 C -0.328 4.328 7 C -0.071 4.071 8 C -0.124 4.124 9 C 0.304 3.696 10 O -0.448 6.448 11 N -0.365 5.365 12 C -0.009 4.009 13 C 0.233 3.767 14 O -0.499 6.499 15 N -0.219 5.219 16 C -0.460 4.460 17 H 0.082 0.918 18 C -0.208 4.208 19 N -0.565 5.565 20 Si 0.778 3.222 21 H -0.181 1.181 22 H -0.198 1.198 23 H -0.158 1.158 24 C -0.298 4.298 25 S 0.377 5.623 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.117 0.883 29 H 0.180 0.820 30 H 0.212 0.788 31 H 0.133 0.867 32 H 0.158 0.842 33 H 0.253 0.747 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.227 0.773 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.842 25.385 10.639 30.809 hybrid contribution 0.382 -0.711 -0.816 1.147 sum -13.460 24.675 9.824 29.774 Atomic orbital electron populations 1.20510 0.84924 1.04695 1.04006 1.24409 1.01615 0.94593 1.07351 1.19478 0.88819 1.00844 1.05282 1.23209 0.99347 0.95979 1.12564 1.83836 0.92153 1.06441 1.75366 1.25300 1.04814 0.94642 1.08024 1.17655 0.89427 0.95729 1.04327 1.20486 1.05715 0.93152 0.93084 1.20929 0.76280 0.80297 0.92115 1.90701 1.49371 1.57382 1.47379 1.45737 1.64115 1.17698 1.08924 1.20849 1.02668 0.91594 0.85828 1.20495 0.83690 0.88654 0.83850 1.90528 1.56664 1.70330 1.32370 1.41946 1.56670 1.15389 1.07862 1.19032 1.39566 0.91744 0.95652 0.91753 1.26057 0.96191 0.96024 1.02505 1.69777 1.43735 1.13368 1.29599 0.85457 0.80291 0.79226 0.77229 1.18068 1.19793 1.15755 1.22878 0.97953 0.96375 1.12602 1.84256 0.93639 1.08310 1.76068 0.89620 0.90315 0.88307 0.82027 0.78814 0.86660 0.84237 0.74663 0.88295 0.87878 0.77286 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.35 71.24 0.74 -0.14 16 2 C -0.16 -2.88 6.42 24.76 0.16 -2.72 16 3 C -0.11 -2.12 10.02 22.06 0.22 -1.89 16 4 C -0.19 -4.16 6.96 22.63 0.16 -4.01 16 5 S 0.16 2.96 23.34 -56.49 -1.32 1.64 16 6 C -0.19 -3.70 10.79 66.90 0.72 -2.97 16 7 C -0.06 -1.28 4.32 -20.08 -0.09 -1.37 16 8 C -0.08 -1.67 5.95 29.10 0.17 -1.50 16 9 C 0.52 14.38 7.82 87.66 0.69 15.07 16 10 O -0.57 -19.70 16.03 -3.04 -0.05 -19.75 16 11 N -0.71 -20.83 5.53 -466.79 -2.58 -23.41 16 12 C 0.12 3.84 6.15 85.63 0.53 4.37 16 13 C 0.45 19.21 7.85 87.66 0.69 19.90 16 14 O -0.61 -31.10 15.24 -3.08 -0.05 -31.15 16 15 N -0.58 -26.51 5.09 -306.98 -1.56 -28.07 16 16 C -0.33 -18.70 10.16 84.04 0.85 -17.85 16 17 H 0.06 4.29 7.39 -2.91 -0.02 4.27 16 18 C -0.01 -0.42 5.50 84.93 0.47 0.05 16 19 N -0.93 -54.19 13.96 21.67 0.30 -53.88 16 20 Si 0.96 38.09 27.74 68.60 1.90 39.99 16 21 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 22 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 23 H -0.23 -7.99 6.52 99.48 0.65 -7.34 16 24 C -0.17 -4.22 6.77 22.63 0.15 -4.07 16 25 S 0.12 2.56 23.32 -56.49 -1.32 1.25 16 26 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 30 H 0.19 2.68 8.06 -2.91 -0.02 2.66 16 31 H 0.12 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.14 1.95 8.08 -2.39 -0.02 1.94 16 33 H 0.42 11.97 7.44 -92.71 -0.69 11.28 16 34 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 35 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 36 H 0.39 15.11 5.76 -92.71 -0.53 14.58 16 37 H 0.28 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -76.25 351.98 0.65 -75.60 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: -0.14 Total: 34.93 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 5.46 Total: 2.86 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -3.84 Total: -105.37 kcal Atomic # 8 Polarization: -50.80 SS G_CDS: -0.10 Total: -50.90 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 1.90 Total: 39.99 kcal Atomic # 16 Polarization: 5.52 SS G_CDS: -2.64 Total: 2.89 kcal Total: -76.25 0.65 -75.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879967310.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.444 kcal (2) G-P(sol) polarization free energy of solvation -76.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds