Wall clock time and date at job start Tue Mar 31 2020 20:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99933 * 2 1 4 4 H 1.48503 * 109.46664 * 274.98125 * 3 2 1 5 5 H 1.48508 * 109.47095 * 34.97538 * 3 2 1 6 6 H 1.48492 * 109.47486 * 154.98130 * 3 2 1 7 7 C 1.37874 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00079 * 185.16546 * 7 2 1 9 9 C 1.50702 * 120.00072 * 5.16134 * 7 2 1 10 10 C 1.52997 * 109.47334 * 185.01636 * 9 7 2 11 11 H 1.08997 * 109.47566 * 305.41737 * 10 9 7 12 12 N 1.46505 * 109.46531 * 65.42233 * 10 9 7 13 13 S 1.65604 * 119.99261 * 214.82860 * 12 10 9 14 14 O 1.42100 * 106.40574 * 309.79058 * 13 12 10 15 15 O 1.42105 * 106.39744 * 176.87508 * 13 12 10 16 16 C 1.76197 * 107.21981 * 63.33693 * 13 12 10 17 17 C 1.35140 * 127.24972 * 84.75192 * 16 13 12 18 18 C 1.37808 * 114.76100 * 180.22415 * 17 16 13 19 19 N 1.30086 * 116.88174 * 359.52045 * 18 17 16 20 20 S 1.69609 * 107.14844 * 0.44051 * 19 18 17 21 21 C 1.50704 * 109.47188 * 185.41681 * 10 9 7 22 22 C 1.38240 * 119.99947 * 279.73065 * 21 10 9 23 23 C 1.38227 * 119.99898 * 179.80962 * 22 21 10 24 24 C 1.38238 * 119.99991 * 0.39607 * 23 22 21 25 25 C 1.38233 * 119.99828 * 359.85930 * 24 23 22 26 26 C 1.38226 * 120.00021 * 100.00481 * 21 10 9 27 27 H 0.96995 * 120.00194 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46724 * 65.02174 * 9 7 2 29 29 H 1.09000 * 109.47262 * 305.02241 * 9 7 2 30 30 H 0.96993 * 120.00230 * 34.82263 * 12 10 9 31 31 H 1.08000 * 122.61975 * 359.95931 * 17 16 13 32 32 H 1.07998 * 121.56181 * 179.72915 * 18 17 16 33 33 H 1.08004 * 119.99749 * 359.97438 * 22 21 10 34 34 H 1.08000 * 120.00366 * 180.23124 * 23 22 21 35 35 H 1.07997 * 120.00159 * 179.82933 * 24 23 22 36 36 H 1.08003 * 119.99590 * 179.97438 * 25 24 23 37 37 H 1.08007 * 120.00174 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3913 2.1071 -1.3949 5 1 1.5030 2.6201 0.8026 6 1 3.5953 1.4122 0.5921 7 6 2.0046 -1.1940 0.0005 8 1 3.0813 -1.1958 0.0847 9 6 1.2557 -2.4966 -0.1163 10 6 2.2344 -3.6628 0.0347 11 1 3.0437 -3.5539 -0.6872 12 7 2.7870 -3.6639 1.3916 13 16 4.3543 -4.1337 1.6467 14 8 4.5132 -5.3795 0.9819 15 8 4.6058 -3.9555 3.0339 16 6 5.3878 -2.9835 0.8020 17 6 5.8277 -1.7902 1.2588 18 6 6.6239 -1.0924 0.3766 19 7 6.8649 -1.6561 -0.7707 20 16 6.0498 -3.1435 -0.7780 21 6 1.5108 -4.9612 -0.2139 22 6 0.7434 -5.5275 0.7869 23 6 0.0766 -6.7164 0.5575 24 6 0.1836 -7.3432 -0.6699 25 6 0.9552 -6.7797 -1.6688 26 6 1.6189 -5.5888 -1.4407 27 1 -0.4850 0.8400 0.0004 28 1 0.7727 -2.5516 -1.0919 29 1 0.4998 -2.5527 0.6671 30 1 2.2349 -3.3893 2.1403 31 1 5.5716 -1.4110 2.2371 32 1 7.0316 -0.1242 0.6274 33 1 0.6629 -5.0396 1.7471 34 1 -0.5259 -7.1569 1.3381 35 1 -0.3351 -8.2735 -0.8482 36 1 1.0391 -7.2697 -2.6276 37 1 2.2217 -5.1484 -2.2213 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413315607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:45 Heat of formation + Delta-G solvation = -10.884734 kcal Electronic energy + Delta-G solvation = -24986.066679 eV Core-core repulsion = 21367.950360 eV Total energy + Delta-G solvation = -3618.116319 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 338.055 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.09445 -38.73210 -37.00698 -35.84134 -35.70739 -32.77190 -31.44996 -30.77359 -30.37067 -28.69693 -25.41223 -24.89342 -22.36061 -22.01330 -21.13155 -20.32446 -19.26322 -18.48609 -17.44764 -16.94711 -16.46823 -16.22612 -15.67269 -14.89490 -14.76345 -14.64194 -14.61441 -14.19456 -13.75694 -13.26374 -13.15484 -12.99169 -12.73748 -12.45143 -12.16848 -12.07263 -11.88186 -11.80126 -11.40687 -11.28185 -11.22563 -10.92952 -10.84343 -10.72216 -10.59866 -10.52783 -10.21052 -10.02741 -9.39905 -9.05065 -8.73387 -8.55440 -8.51209 -8.23962 -6.17000 -4.19920 0.18146 0.60142 1.32925 1.74190 1.77609 1.78695 2.32234 3.19029 3.21556 3.26943 3.27890 3.84854 4.18278 4.31466 4.61314 4.95341 5.02887 5.19466 5.20714 5.21702 5.31596 5.47323 5.50419 5.55303 5.70246 5.85163 5.88435 6.10200 6.29298 6.39509 6.42584 6.48640 6.80892 6.83611 7.04075 7.29138 7.37427 7.46884 7.57579 7.78602 8.16327 8.83803 9.44428 10.93528 Molecular weight = 338.05amu Principal moments of inertia in cm(-1) A = 0.008963 B = 0.006464 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3123.233047 B = 4330.534275 C = 6174.793545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.884 3.116 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.026 3.974 10 C 0.194 3.806 11 H 0.078 0.922 12 N -1.081 6.081 13 S 2.720 3.280 14 O -0.946 6.946 15 O -0.958 6.958 16 C -0.776 4.776 17 C -0.052 4.052 18 C 0.069 3.931 19 N -0.438 5.438 20 S 0.377 5.623 21 C -0.078 4.078 22 C -0.103 4.103 23 C -0.124 4.124 24 C -0.131 4.131 25 C -0.121 4.121 26 C -0.110 4.110 27 H 0.262 0.738 28 H 0.030 0.970 29 H 0.036 0.964 30 H 0.423 0.577 31 H 0.170 0.830 32 H 0.191 0.809 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.520 -8.411 0.823 10.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.712 3.288 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.013 4.013 10 C 0.088 3.912 11 H 0.096 0.904 12 N -0.843 5.843 13 S 2.802 3.198 14 O -0.936 6.936 15 O -0.948 6.948 16 C -0.987 4.987 17 C -0.092 4.092 18 C -0.128 4.128 19 N -0.262 5.262 20 S 0.531 5.469 21 C -0.080 4.080 22 C -0.122 4.122 23 C -0.142 4.142 24 C -0.150 4.150 25 C -0.139 4.139 26 C -0.128 4.128 27 H 0.072 0.928 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.259 0.741 31 H 0.187 0.813 32 H 0.207 0.793 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.411 -9.695 -0.912 12.237 hybrid contribution -0.159 2.716 1.548 3.130 sum 7.253 -6.979 0.636 10.085 Atomic orbital electron populations 1.69945 1.05947 1.26805 1.49910 1.24936 0.94750 0.99038 0.95127 0.86700 0.80013 0.83935 0.78137 1.20710 1.21130 1.19759 1.21051 0.93145 0.90507 1.51156 0.92688 1.19417 0.93572 0.89682 0.98595 1.20043 0.97423 0.93259 0.80524 0.90420 1.55242 1.28146 1.84668 1.16248 1.01373 0.72483 0.73085 0.72882 1.93626 1.85860 1.37569 1.76517 1.93574 1.84777 1.86498 1.29952 1.37132 1.25100 1.20000 1.16429 1.21230 0.94517 0.90857 1.02605 1.23053 0.98260 1.02178 0.89323 1.76493 1.21174 1.06047 1.22491 1.83809 1.37330 1.18508 1.07278 1.20451 0.97334 0.96206 0.94004 1.20926 0.96609 0.95485 0.99142 1.21069 0.99959 0.95995 0.97160 1.21023 1.00014 0.99960 0.93959 1.21023 0.97906 0.96086 0.98908 1.20986 0.99762 0.95289 0.96787 0.92813 0.95168 0.94577 0.74082 0.81268 0.79275 0.86204 0.86560 0.86756 0.86497 0.86121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.44 13.28 55.43 0.74 -23.71 16 2 C 0.06 1.66 5.45 -17.82 -0.10 1.56 16 3 Si 0.88 20.09 29.54 -169.99 -5.02 15.07 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.52 -12.73 8.84 -34.44 -0.30 -13.03 16 8 H 0.05 1.29 7.75 -52.49 -0.41 0.89 16 9 C 0.03 0.57 4.56 -27.88 -0.13 0.44 16 10 C 0.19 3.53 2.32 -69.08 -0.16 3.37 16 11 H 0.08 1.38 7.62 -51.93 -0.40 0.98 16 12 N -1.08 -17.99 4.48 -5.88 -0.03 -18.01 16 13 S 2.72 44.59 5.81 -107.50 -0.63 43.96 16 14 O -0.95 -16.88 17.73 -57.17 -1.01 -17.90 16 15 O -0.96 -16.96 17.93 -57.17 -1.03 -17.98 16 16 C -0.78 -12.19 6.36 29.63 0.19 -12.01 16 17 C -0.05 -0.76 10.09 -40.84 -0.41 -1.17 16 18 C 0.07 0.94 11.27 -18.45 -0.21 0.73 16 19 N -0.44 -6.71 12.09 28.86 0.35 -6.36 16 20 S 0.38 5.69 23.62 -107.50 -2.54 3.15 16 21 C -0.08 -1.34 4.96 -104.62 -0.52 -1.86 16 22 C -0.10 -1.66 9.33 -39.58 -0.37 -2.03 16 23 C -0.12 -1.76 10.05 -39.59 -0.40 -2.16 16 24 C -0.13 -1.77 10.05 -39.58 -0.40 -2.17 16 25 C -0.12 -1.70 10.05 -39.59 -0.40 -2.10 16 26 C -0.11 -1.74 9.67 -39.59 -0.38 -2.12 16 27 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.85 8.13 -51.93 -0.42 0.43 16 30 H 0.42 6.51 8.64 -34.48 -0.30 6.21 16 31 H 0.17 2.08 8.06 -52.49 -0.42 1.66 16 32 H 0.19 1.89 8.06 -52.49 -0.42 1.47 16 33 H 0.12 1.78 7.56 -52.48 -0.40 1.38 16 34 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 35 H 0.11 1.23 8.06 -52.49 -0.42 0.80 16 36 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 37 H 0.12 1.73 8.04 -52.48 -0.42 1.31 16 LS Contribution 353.28 15.07 5.32 5.32 Total: -1.00 -31.39 353.28 -11.44 -42.83 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -4.01 Total: 6.16 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: -3.58 Total: -32.54 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 1.06 Total: -48.08 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -2.04 Total: -35.88 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 50.28 SS G_CDS: -3.16 Total: 47.12 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.39 -11.44 -42.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413315607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.944 kcal (2) G-P(sol) polarization free energy of solvation -31.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds