Wall clock time and date at job start Tue Mar 31 2020 21:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00257 * 2 1 4 4 H 1.48502 * 109.47238 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46882 * 300.00345 * 3 2 1 6 6 H 1.48503 * 109.46965 * 60.00260 * 3 2 1 7 7 C 1.37878 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99943 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00198 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47454 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00354 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99868 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00465 * 179.97438 * 11 10 9 14 14 O 1.45195 * 109.47675 * 179.97438 * 13 11 10 15 15 C 1.34222 * 117.00787 * 180.02562 * 14 13 11 16 16 O 1.20834 * 119.99417 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00473 * 180.02562 * 15 14 13 18 18 O 1.42909 * 109.47245 * 180.02562 * 17 15 14 19 19 C 1.35897 * 117.00046 * 180.02562 * 18 17 15 20 20 C 1.38727 * 120.05648 * 179.97438 * 19 18 17 21 21 C 1.38146 * 119.94819 * 180.02562 * 20 19 18 22 22 C 1.38264 * 120.05197 * 0.03048 * 21 20 19 23 23 N 1.48007 * 119.94459 * 179.97438 * 22 21 20 24 24 O 1.21803 * 119.99745 * 359.97438 * 23 22 21 25 25 O 1.21799 * 120.00052 * 179.72330 * 23 22 21 26 26 C 1.38267 * 120.11170 * 0.24436 * 22 21 20 27 27 C 1.38145 * 120.05652 * 359.45728 * 26 22 21 28 28 H 0.96995 * 119.99715 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47155 * 59.99628 * 9 7 2 30 30 H 1.09007 * 109.47253 * 300.00136 * 9 7 2 31 31 H 0.97004 * 119.99977 * 359.97438 * 10 9 7 32 32 H 1.09007 * 109.47185 * 59.99521 * 13 11 10 33 33 H 1.08998 * 109.46955 * 300.00193 * 13 11 10 34 34 H 1.08997 * 109.47151 * 59.99853 * 17 15 14 35 35 H 1.08997 * 109.47073 * 299.99414 * 17 15 14 36 36 H 1.08002 * 120.02536 * 0.02562 * 20 19 18 37 37 H 1.07994 * 119.97339 * 179.97438 * 21 20 19 38 38 H 1.08001 * 119.97348 * 179.73305 * 26 22 21 39 39 H 1.08000 * 120.03074 * 180.25062 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7538 -4.8834 -0.0011 12 8 0.5614 -5.1050 -0.0011 13 6 2.7331 -6.0288 -0.0016 14 8 2.0071 -7.2863 -0.0015 15 6 2.7381 -8.4120 -0.0015 16 8 3.9448 -8.3488 -0.0020 17 6 2.0539 -9.7547 -0.0019 18 8 3.0382 -10.7909 -0.0012 19 6 2.5852 -12.0721 -0.0020 20 6 3.4856 -13.1275 -0.0019 21 6 3.0226 -14.4290 -0.0032 22 6 1.6630 -14.6803 -0.0054 23 7 1.1696 -16.0757 -0.0074 24 8 1.9611 -17.0015 -0.0077 25 8 -0.0279 -16.2983 -0.0042 26 6 0.7635 -13.6302 -0.0113 27 6 1.2214 -12.3269 -0.0037 28 1 -0.4849 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8902 30 1 0.6247 -2.5571 0.8897 31 1 3.1567 -3.4354 -0.0009 32 1 3.3599 -5.9714 0.8883 33 1 3.3596 -5.9707 -0.8916 34 1 1.4315 -9.8450 -0.8921 35 1 1.4310 -9.8454 0.8879 36 1 4.5477 -12.9316 -0.0007 37 1 3.7232 -15.2509 -0.0036 38 1 -0.2980 -13.8291 -0.0173 39 1 0.5184 -11.5070 -0.0042 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009606821.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:10 Heat of formation + Delta-G solvation = -128.280946 kcal Electronic energy + Delta-G solvation = -26581.445714 eV Core-core repulsion = 22072.732971 eV Total energy + Delta-G solvation = -4508.712743 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.56410 -41.41172 -40.61325 -38.95687 -38.31992 -36.92702 -36.63084 -34.38420 -32.52522 -32.37430 -31.88920 -30.35386 -28.83340 -26.81454 -26.40855 -24.09050 -22.99171 -22.63997 -21.48233 -20.11389 -19.89910 -19.25027 -19.06280 -18.11802 -17.90029 -17.61222 -17.57773 -16.94295 -16.35177 -16.15276 -15.68063 -15.43144 -15.18240 -14.81498 -14.59880 -14.54812 -14.25080 -13.78065 -13.71500 -13.13055 -13.12177 -12.68168 -12.14167 -12.10631 -12.06305 -11.90698 -11.89770 -11.59465 -11.50442 -11.07428 -11.05508 -10.95034 -10.94941 -10.42437 -10.17610 -9.51486 -9.51447 -9.35522 -8.87844 -8.11710 -6.27744 -4.35536 -0.61878 0.22779 0.86008 0.98512 1.34831 1.66309 2.59770 2.66556 3.00212 3.16765 3.24289 3.26922 3.58522 3.72608 3.77272 3.93547 4.17037 4.23831 4.24630 4.27269 4.34947 4.52355 4.81079 4.90818 4.95729 5.01749 5.08416 5.09201 5.16473 5.19790 5.43584 5.93112 5.94362 6.21774 7.10080 7.15069 7.25147 7.26443 7.34957 7.51553 7.82712 8.36453 8.59695 8.82949 9.31318 10.82370 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.044074 B = 0.001401 C = 0.001359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.149857 B =19981.740600 C =20591.138681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.250 3.750 10 N -0.704 5.704 11 C 0.500 3.500 12 O -0.534 6.534 13 C 0.051 3.949 14 O -0.323 6.323 15 C 0.465 3.535 16 O -0.485 6.485 17 C 0.063 3.937 18 O -0.280 6.280 19 C 0.188 3.812 20 C -0.145 4.145 21 C -0.013 4.013 22 C -0.086 4.086 23 N 0.035 4.965 24 O -0.165 6.165 25 O -0.165 6.165 26 C -0.008 4.008 27 C -0.211 4.211 28 H 0.267 0.733 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.394 0.606 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.159 0.841 37 H 0.162 0.838 38 H 0.159 0.841 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.337 -26.527 -0.016 27.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.585 4.585 8 H 0.083 0.917 9 C 0.130 3.870 10 N -0.354 5.354 11 C 0.282 3.718 12 O -0.412 6.412 13 C -0.026 4.026 14 O -0.238 6.238 15 C 0.305 3.695 16 O -0.371 6.371 17 C -0.013 4.013 18 O -0.192 6.192 19 C 0.141 3.859 20 C -0.165 4.165 21 C -0.032 4.032 22 C -0.170 4.170 23 N 0.552 4.448 24 O -0.380 6.380 25 O -0.380 6.380 26 C -0.027 4.027 27 C -0.230 4.230 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.227 0.773 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.177 0.823 37 H 0.179 0.821 38 H 0.177 0.823 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.096 -25.708 -0.020 26.421 hybrid contribution 0.670 0.823 -0.002 1.061 sum 6.766 -24.885 -0.022 25.789 Atomic orbital electron populations 1.69974 1.06137 1.27401 1.48603 1.24951 0.94933 0.99533 0.94511 0.86333 0.79812 0.82766 0.77837 1.19586 1.20729 1.20724 1.21232 0.93384 0.90240 1.53649 0.91677 1.19210 0.88137 0.81493 0.98113 1.46379 1.11645 1.05261 1.72118 1.19815 0.89032 0.83968 0.78969 1.90719 1.16246 1.84513 1.49700 1.22986 0.94491 0.80083 1.05056 1.86483 1.40113 1.13790 1.83374 1.22665 0.86440 0.86343 0.74051 1.90749 1.15057 1.87617 1.43675 1.22065 0.89941 0.82563 1.06683 1.86140 1.34483 1.11679 1.86882 1.19346 0.92493 0.84058 0.90037 1.20471 1.01169 0.88674 1.06143 1.20863 0.93020 0.97889 0.91466 1.21027 0.95038 0.81478 1.19445 1.43515 1.00795 1.03125 0.97319 1.94546 1.53068 1.36649 1.53719 1.94552 0.98964 1.90737 1.53702 1.20858 1.01170 0.90109 0.90603 1.21386 0.94660 0.97755 1.09194 0.92360 0.95160 0.95169 0.77325 0.88084 0.88078 0.86408 0.86417 0.82309 0.82056 0.82324 0.82527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.08 13.29 55.43 0.74 -24.34 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 20.06 29.54 -169.99 -5.02 15.04 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.55 -14.10 9.28 -34.44 -0.32 -14.42 16 8 H 0.07 1.56 7.60 -52.49 -0.40 1.17 16 9 C 0.25 6.24 5.43 -5.20 -0.03 6.21 16 10 N -0.70 -13.48 5.55 -61.48 -0.34 -13.83 16 11 C 0.50 9.07 7.91 -10.99 -0.09 8.98 16 12 O -0.53 -12.02 16.50 -14.10 -0.23 -12.25 16 13 C 0.05 0.66 5.94 36.00 0.21 0.88 16 14 O -0.32 -4.10 9.75 -45.88 -0.45 -4.55 16 15 C 0.46 4.88 8.03 36.00 0.29 5.17 16 16 O -0.48 -6.39 16.25 -25.48 -0.41 -6.81 16 17 C 0.06 0.39 5.33 36.00 0.19 0.58 16 18 O -0.28 -2.07 9.67 -39.37 -0.38 -2.45 16 19 C 0.19 1.08 6.69 -39.22 -0.26 0.82 16 20 C -0.15 -0.74 9.99 -39.43 -0.39 -1.14 16 21 C -0.01 -0.07 9.55 -39.61 -0.38 -0.45 16 22 C -0.09 -0.62 6.85 -79.93 -0.55 -1.16 16 23 N 0.03 0.34 4.45 33.97 0.15 0.49 16 24 O -0.16 -1.74 18.44 -29.46 -0.54 -2.29 16 25 O -0.16 -1.76 18.44 -29.46 -0.54 -2.31 16 26 C -0.01 -0.05 9.55 -39.60 -0.38 -0.42 16 27 C -0.21 -0.94 9.04 -39.43 -0.36 -1.30 16 28 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.39 6.26 8.32 -40.82 -0.34 5.92 16 32 H 0.10 1.11 8.13 -51.92 -0.42 0.69 16 33 H 0.10 1.11 8.13 -51.93 -0.42 0.69 16 34 H 0.12 0.43 7.66 -51.93 -0.40 0.03 16 35 H 0.12 0.43 7.66 -51.93 -0.40 0.03 16 36 H 0.16 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.16 0.64 7.60 -52.49 -0.40 0.24 16 38 H 0.16 0.67 7.61 -52.49 -0.40 0.27 16 39 H 0.16 0.33 6.30 -52.49 -0.33 0.00 16 LS Contribution 363.92 15.07 5.48 5.48 Total: -1.00 -35.11 363.92 -7.62 -42.72 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -3.91 Total: -0.29 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -2.15 Total: 5.37 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.55 Total: -37.68 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -2.56 Total: -30.65 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.11 -7.62 -42.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009606821.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.556 kcal (2) G-P(sol) polarization free energy of solvation -35.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds