Wall clock time and date at job start Tue Mar 31 2020 21:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00257 * 2 1 4 4 H 1.48502 * 109.47238 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46882 * 300.00345 * 3 2 1 6 6 H 1.48503 * 109.46965 * 60.00260 * 3 2 1 7 7 C 1.37878 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99943 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00198 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47454 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00354 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99868 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00465 * 179.97438 * 11 10 9 14 14 O 1.45195 * 109.47675 * 179.97438 * 13 11 10 15 15 C 1.34222 * 117.00787 * 180.02562 * 14 13 11 16 16 O 1.20834 * 119.99417 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00473 * 180.02562 * 15 14 13 18 18 O 1.42909 * 109.47245 * 180.02562 * 17 15 14 19 19 C 1.35897 * 117.00046 * 180.02562 * 18 17 15 20 20 C 1.38727 * 120.05648 * 179.97438 * 19 18 17 21 21 C 1.38146 * 119.94819 * 180.02562 * 20 19 18 22 22 C 1.38264 * 120.05197 * 0.03048 * 21 20 19 23 23 N 1.48007 * 119.94459 * 179.97438 * 22 21 20 24 24 O 1.21803 * 119.99745 * 359.97438 * 23 22 21 25 25 O 1.21799 * 120.00052 * 179.72330 * 23 22 21 26 26 C 1.38267 * 120.11170 * 0.24436 * 22 21 20 27 27 C 1.38145 * 120.05652 * 359.45728 * 26 22 21 28 28 H 0.96995 * 119.99715 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47155 * 59.99628 * 9 7 2 30 30 H 1.09007 * 109.47253 * 300.00136 * 9 7 2 31 31 H 0.97004 * 119.99977 * 359.97438 * 10 9 7 32 32 H 1.09007 * 109.47185 * 59.99521 * 13 11 10 33 33 H 1.08998 * 109.46955 * 300.00193 * 13 11 10 34 34 H 1.08997 * 109.47151 * 59.99853 * 17 15 14 35 35 H 1.08997 * 109.47073 * 299.99414 * 17 15 14 36 36 H 1.08002 * 120.02536 * 0.02562 * 20 19 18 37 37 H 1.07994 * 119.97339 * 179.97438 * 21 20 19 38 38 H 1.08001 * 119.97348 * 179.73305 * 26 22 21 39 39 H 1.08000 * 120.03074 * 180.25062 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7538 -4.8834 -0.0011 12 8 0.5614 -5.1050 -0.0011 13 6 2.7331 -6.0288 -0.0016 14 8 2.0071 -7.2863 -0.0015 15 6 2.7381 -8.4120 -0.0015 16 8 3.9448 -8.3488 -0.0020 17 6 2.0539 -9.7547 -0.0019 18 8 3.0382 -10.7909 -0.0012 19 6 2.5852 -12.0721 -0.0020 20 6 3.4856 -13.1275 -0.0019 21 6 3.0226 -14.4290 -0.0032 22 6 1.6630 -14.6803 -0.0054 23 7 1.1696 -16.0757 -0.0074 24 8 1.9611 -17.0015 -0.0077 25 8 -0.0279 -16.2983 -0.0042 26 6 0.7635 -13.6302 -0.0113 27 6 1.2214 -12.3269 -0.0037 28 1 -0.4849 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8902 30 1 0.6247 -2.5571 0.8897 31 1 3.1567 -3.4354 -0.0009 32 1 3.3599 -5.9714 0.8883 33 1 3.3596 -5.9707 -0.8916 34 1 1.4315 -9.8450 -0.8921 35 1 1.4310 -9.8454 0.8879 36 1 4.5477 -12.9316 -0.0007 37 1 3.7232 -15.2509 -0.0036 38 1 -0.2980 -13.8291 -0.0173 39 1 0.5184 -11.5070 -0.0042 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000009606821.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:10 Heat of formation + Delta-G solvation = -150.878571 kcal Electronic energy + Delta-G solvation = -26582.425621 eV Core-core repulsion = 22072.732971 eV Total energy + Delta-G solvation = -4509.692650 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.22414 -42.09032 -41.34576 -40.36762 -38.89072 -37.65416 -37.58867 -36.19072 -34.42367 -32.81906 -32.35445 -31.29446 -29.98082 -28.31826 -27.10253 -24.81432 -24.37524 -23.40718 -22.27866 -21.66029 -20.43093 -19.82643 -19.73620 -19.31725 -18.65140 -18.57589 -18.30309 -18.06844 -17.33434 -17.11303 -17.00017 -16.60733 -16.08588 -16.02854 -15.76652 -14.99962 -14.88806 -14.66323 -14.64680 -14.25403 -14.06073 -14.02669 -13.64656 -13.64172 -12.91825 -12.76621 -12.73334 -12.56726 -12.41136 -12.31017 -12.29137 -12.23030 -11.99690 -11.77212 -11.47159 -10.93526 -10.83462 -10.54723 -9.96256 -9.93460 -8.30371 -6.46482 -1.23258 -0.13645 0.26281 0.40024 0.65442 0.88797 1.44640 1.44826 1.54346 1.58185 1.94701 2.18189 2.35371 2.56956 3.05530 3.21678 3.41605 3.42248 3.53541 3.69004 3.81919 3.89239 3.92681 4.03924 4.04425 4.19022 4.38790 4.62553 4.68205 4.83509 5.02245 5.04488 5.12170 5.22185 5.28782 5.41433 5.62016 5.79245 5.82127 6.41563 6.48273 6.62978 6.76749 7.20203 7.34939 8.81762 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.044074 B = 0.001401 C = 0.001359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.149857 B =19981.740600 C =20591.138681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.983 3.017 4 H -0.253 1.253 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.556 4.556 8 H 0.086 0.914 9 C 0.265 3.735 10 N -0.699 5.699 11 C 0.500 3.500 12 O -0.582 6.582 13 C 0.063 3.937 14 O -0.338 6.338 15 C 0.467 3.533 16 O -0.515 6.515 17 C 0.063 3.937 18 O -0.297 6.297 19 C 0.186 3.814 20 C -0.145 4.145 21 C -0.012 4.012 22 C -0.103 4.103 23 N 0.037 4.963 24 O -0.187 6.187 25 O -0.189 6.189 26 C -0.010 4.010 27 C -0.200 4.200 28 H 0.269 0.731 29 H -0.006 1.006 30 H -0.006 1.006 31 H 0.413 0.587 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.173 0.827 37 H 0.172 0.828 38 H 0.169 0.831 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.184 -26.192 -0.017 27.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.806 3.194 4 H -0.177 1.177 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.594 4.594 8 H 0.104 0.896 9 C 0.143 3.857 10 N -0.350 5.350 11 C 0.285 3.715 12 O -0.463 6.463 13 C -0.013 4.013 14 O -0.254 6.254 15 C 0.310 3.690 16 O -0.403 6.403 17 C -0.012 4.012 18 O -0.209 6.209 19 C 0.139 3.861 20 C -0.164 4.164 21 C -0.031 4.031 22 C -0.187 4.187 23 N 0.549 4.451 24 O -0.399 6.399 25 O -0.400 6.400 26 C -0.029 4.029 27 C -0.219 4.219 28 H 0.078 0.922 29 H 0.012 0.988 30 H 0.012 0.988 31 H 0.249 0.751 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.166 0.834 35 H 0.166 0.834 36 H 0.190 0.810 37 H 0.189 0.811 38 H 0.187 0.813 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 7.982 -25.435 -0.021 26.658 hybrid contribution 0.105 0.710 -0.002 0.718 sum 8.087 -24.724 -0.023 26.013 Atomic orbital electron populations 1.70125 1.08191 1.28530 1.49936 1.26007 0.95731 1.03753 0.93881 0.85140 0.79142 0.77521 0.77591 1.17652 1.20613 1.20602 1.21648 0.94443 0.90449 1.52884 0.89611 1.18637 0.88572 0.83755 0.94721 1.46045 1.11749 1.04781 1.72432 1.20661 0.89296 0.84670 0.76846 1.90694 1.18835 1.85272 1.51495 1.22783 0.92490 0.78573 1.07504 1.86475 1.40888 1.14221 1.83778 1.23436 0.86183 0.86830 0.72566 1.90740 1.16397 1.87882 1.45232 1.22333 0.89375 0.79872 1.09593 1.86104 1.35416 1.12268 1.87119 1.19478 0.93130 0.83535 0.89955 1.20642 1.01960 0.88256 1.05565 1.21007 0.92571 0.98507 0.90966 1.21252 0.96090 0.80038 1.21338 1.43881 1.00496 1.04121 0.96602 1.94524 1.52956 1.37892 1.54550 1.94530 0.99539 1.91307 1.54672 1.21068 1.01566 0.90076 0.90158 1.21637 0.94618 0.97937 1.07746 0.92232 0.98814 0.98824 0.75106 0.85532 0.85523 0.83371 0.83385 0.80995 0.81051 0.81322 0.79708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.90 13.29 21.45 0.28 -53.62 16 2 C 0.01 0.33 5.46 84.66 0.46 0.79 16 3 Si 0.98 40.59 29.54 68.60 2.03 42.61 16 4 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 5 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 6 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.56 -28.60 9.28 25.60 0.24 -28.36 16 8 H 0.09 3.95 7.60 -2.91 -0.02 3.93 16 9 C 0.27 13.62 5.43 85.63 0.46 14.09 16 10 N -0.70 -26.54 5.55 -466.80 -2.59 -29.13 16 11 C 0.50 17.89 7.91 87.66 0.69 18.58 16 12 O -0.58 -26.67 16.50 15.77 0.26 -26.41 16 13 C 0.06 1.49 5.94 71.23 0.42 1.92 16 14 O -0.34 -7.83 9.75 -44.99 -0.44 -8.27 16 15 C 0.47 8.54 8.03 71.23 0.57 9.11 16 16 O -0.51 -12.35 16.25 28.37 0.46 -11.89 16 17 C 0.06 0.54 5.33 71.23 0.38 0.92 16 18 O -0.30 -3.46 9.67 -73.31 -0.71 -4.17 16 19 C 0.19 1.61 6.69 22.51 0.15 1.76 16 20 C -0.15 -1.18 9.99 22.36 0.22 -0.95 16 21 C -0.01 -0.11 9.55 22.25 0.21 0.10 16 22 C -0.10 -1.37 6.85 36.39 0.25 -1.12 16 23 N 0.04 0.73 4.45 -46.44 -0.21 0.52 16 24 O -0.19 -4.05 18.44 18.88 0.35 -3.70 16 25 O -0.19 -4.12 18.44 18.89 0.35 -3.78 16 26 C -0.01 -0.09 9.55 22.25 0.21 0.13 16 27 C -0.20 -1.16 9.04 22.37 0.20 -0.96 16 28 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 29 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 30 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 31 H 0.41 12.43 8.32 -92.71 -0.77 11.65 16 32 H 0.13 2.40 8.13 -2.38 -0.02 2.39 16 33 H 0.13 2.41 8.13 -2.39 -0.02 2.39 16 34 H 0.15 0.42 7.66 -2.39 -0.02 0.40 16 35 H 0.15 0.42 7.66 -2.39 -0.02 0.40 16 36 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 37 H 0.17 1.21 7.60 -2.91 -0.02 1.19 16 38 H 0.17 1.15 7.61 -2.91 -0.02 1.12 16 39 H 0.19 -0.05 6.30 -2.91 -0.02 -0.07 16 Total: -1.00 -79.58 363.92 4.62 -74.95 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: 0.36 Total: 6.87 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: 4.48 Total: 16.00 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -2.51 Total: -82.23 kcal Atomic # 8 Polarization: -58.48 SS G_CDS: 0.27 Total: -58.21 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.61 kcal Total: -79.58 4.62 -74.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009606821.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.927 kcal (2) G-P(sol) polarization free energy of solvation -79.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds