Wall clock time and date at job start Tue Mar 31 2020 21:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38368 * 119.84820 * 2 1 4 4 N 1.48019 * 119.92464 * 0.04220 * 3 2 1 5 5 O 1.21800 * 120.00381 * 173.09789 * 4 3 2 6 6 O 1.21803 * 120.00296 * 353.10469 * 4 3 2 7 7 C 1.37943 * 120.15340 * 180.02562 * 3 2 1 8 8 C 1.39631 * 119.84469 * 0.02562 * 7 3 2 9 9 C 1.47722 * 120.14980 * 180.02562 * 8 7 3 10 10 O 1.21472 * 120.00116 * 359.97438 * 9 8 7 11 11 O 1.34713 * 120.00167 * 179.97438 * 9 8 7 12 12 C 1.45194 * 116.99963 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.46886 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.46918 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47099 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99869 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99978 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00074 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99676 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47170 * 60.00133 * 19 17 15 21 21 H 1.48502 * 109.46835 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47222 * 299.99718 * 19 17 15 23 23 C 1.39633 * 119.69979 * 0.27007 * 8 7 3 24 24 C 1.37943 * 119.84540 * 359.45129 * 23 8 7 25 25 N 1.48023 * 119.92141 * 180.29826 * 24 23 8 26 26 O 1.21796 * 120.00394 * 6.93322 * 25 24 23 27 27 O 1.21799 * 119.99608 * 186.92867 * 25 24 23 28 28 H 1.09003 * 109.47048 * 90.25469 * 1 2 3 29 29 H 1.09002 * 109.46826 * 210.25866 * 1 2 3 30 30 H 1.08998 * 109.47240 * 330.25417 * 1 2 3 31 31 H 1.07999 * 120.07982 * 179.97438 * 7 3 2 32 32 H 1.09001 * 109.47437 * 299.99851 * 12 11 9 33 33 H 1.08999 * 109.47140 * 59.99864 * 12 11 9 34 34 H 1.08999 * 109.47118 * 299.99618 * 13 12 11 35 35 H 1.08993 * 109.47023 * 60.00079 * 13 12 11 36 36 H 1.08993 * 109.47587 * 300.00001 * 14 13 12 37 37 H 1.09006 * 109.46911 * 60.00080 * 14 13 12 38 38 H 0.97004 * 119.99751 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.07437 * 179.72808 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1957 1.2001 0.0000 4 7 1.4505 2.4791 0.0009 5 8 2.0488 3.5324 0.1277 6 8 0.2390 2.4782 -0.1249 7 6 3.5751 1.2075 -0.0005 8 6 4.2764 0.0001 -0.0016 9 6 5.7537 0.0001 -0.0016 10 8 6.3610 1.0520 -0.0012 11 8 6.4273 -1.1666 -0.0021 12 6 7.8772 -1.0905 -0.0027 13 6 8.4620 -2.5044 -0.0039 14 6 9.9899 -2.4243 -0.0051 15 6 10.5660 -3.8168 -0.0056 16 1 9.9081 -4.6733 -0.0056 17 6 11.9329 -3.9974 -0.0062 18 7 12.7340 -2.9545 -0.0068 19 14 12.6468 -5.7236 -0.0062 20 1 12.1886 -6.4489 -1.2183 21 1 14.1298 -5.6459 -0.0075 22 1 12.1898 -6.4483 1.2066 23 6 3.5751 -1.2073 -0.0079 24 6 2.1957 -1.2000 -0.0015 25 7 1.4506 -2.4791 -0.0014 26 8 2.0493 -3.5327 0.1204 27 8 0.2387 -2.4778 -0.1231 28 1 -0.3633 -0.0046 -1.0277 29 1 -0.3633 -0.8877 0.5179 30 1 -0.3633 0.8922 0.5099 31 1 4.1114 2.1449 -0.0010 32 1 8.2128 -0.5582 -0.8927 33 1 8.2135 -0.5585 0.8873 34 1 8.1265 -3.0371 0.8859 35 1 8.1257 -3.0359 -0.8940 36 1 10.3252 -1.8917 -0.8950 37 1 10.3266 -1.8925 0.8849 38 1 13.6957 -3.0816 -0.0076 39 1 4.1114 -2.1447 -0.0132 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061368614.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:20 Heat of formation + Delta-G solvation = -55.375064 kcal Electronic energy + Delta-G solvation = -28055.628752 eV Core-core repulsion = 23550.077445 eV Total energy + Delta-G solvation = -4505.551307 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.27841 -42.75051 -41.16855 -39.85563 -37.50826 -37.25819 -36.95967 -34.39945 -34.04750 -33.47789 -31.85313 -29.61416 -27.69086 -27.32612 -26.61555 -24.53385 -23.44534 -23.17677 -21.89766 -20.63445 -20.00223 -19.65324 -19.05808 -18.72069 -18.43957 -18.20904 -17.76418 -17.40477 -16.80509 -16.57717 -16.45210 -16.00701 -14.96372 -14.55830 -14.35053 -13.97933 -13.83638 -13.60048 -13.43633 -13.29092 -12.45601 -12.33305 -12.20104 -12.12874 -12.01483 -11.97237 -11.78848 -11.68426 -11.17068 -11.08170 -11.05706 -10.85256 -10.82829 -10.68707 -10.68650 -10.43234 -9.91940 -9.66440 -9.29767 -8.47800 -6.12690 -4.16482 -1.24715 -1.06368 -0.04543 0.24028 0.56707 0.71009 1.52419 2.05027 2.38513 3.13463 3.19983 3.26681 3.30904 3.31658 3.34212 3.55693 3.58898 4.07906 4.24320 4.35768 4.48036 4.74587 4.76912 4.86710 5.02371 5.23289 5.25567 5.28578 5.31120 5.60401 5.74204 5.82649 6.01504 6.33116 6.52639 6.79153 6.91610 6.97902 7.27088 7.47022 7.56337 7.84338 8.24099 8.89312 9.48579 10.98571 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.016508 B = 0.002210 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.713491 B =12667.412236 C =14328.837448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.077 3.923 3 C -0.065 4.065 4 N 0.033 4.967 5 O -0.138 6.138 6 O -0.138 6.138 7 C 0.056 3.944 8 C -0.119 4.119 9 C 0.510 3.490 10 O -0.485 6.485 11 O -0.347 6.347 12 C 0.069 3.931 13 C -0.110 4.110 14 C 0.025 3.975 15 C -0.525 4.525 16 H 0.058 0.942 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.896 3.104 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.053 3.947 24 C -0.065 4.065 25 N 0.032 4.968 26 O -0.132 6.132 27 O -0.140 6.140 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.187 0.813 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.263 0.737 39 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.610 7.951 0.024 26.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.075 3.925 3 C -0.149 4.149 4 N 0.555 4.445 5 O -0.355 6.355 6 O -0.353 6.353 7 C 0.037 3.963 8 C -0.122 4.122 9 C 0.352 3.648 10 O -0.373 6.373 11 O -0.263 6.263 12 C -0.003 4.003 13 C -0.148 4.148 14 C -0.012 4.012 15 C -0.563 4.563 16 H 0.076 0.924 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C 0.034 3.966 24 C -0.149 4.149 25 N 0.553 4.447 26 O -0.351 6.351 27 O -0.355 6.355 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.204 0.796 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.073 0.927 39 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -24.474 8.298 0.019 25.843 hybrid contribution 0.403 -0.781 -0.028 0.879 sum -24.071 7.518 -0.009 25.218 Atomic orbital electron populations 1.22269 0.85397 1.08550 1.06659 1.19826 1.00272 0.88369 0.84056 1.20412 0.91769 0.84532 1.18186 1.43131 1.01153 1.01802 0.98434 1.94638 1.70447 1.18090 1.52355 1.94483 0.95448 1.93070 1.52297 1.21501 0.90908 1.01219 0.82706 1.18964 0.92365 0.91630 1.09204 1.20237 0.86825 0.83406 0.74371 1.90925 1.69318 1.32573 1.44499 1.86527 1.25420 1.31720 1.82682 1.23765 0.71518 1.02153 1.02866 1.21831 0.99443 0.91203 1.02317 1.19050 0.86421 0.97952 0.97783 1.21103 0.91568 0.92110 1.51522 0.92403 1.25026 0.97232 0.97088 0.95034 1.69946 1.03690 1.29455 1.50183 0.86591 0.77888 0.84424 0.78741 1.20125 1.21220 1.20113 1.21867 0.91027 1.01641 0.82060 1.20551 0.92005 0.84567 1.17797 1.43154 1.01160 1.01832 0.98514 1.94657 1.70398 1.17928 1.52076 1.94481 0.95449 1.93102 1.52445 0.86786 0.86480 0.86531 0.79560 0.90801 0.90774 0.91827 0.91858 0.96161 0.96154 0.92732 0.79215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.01 7.89 36.01 0.28 -0.72 16 2 C 0.08 0.55 5.89 -104.53 -0.62 -0.07 16 3 C -0.06 -0.50 6.82 -80.01 -0.55 -1.04 16 4 N 0.03 0.30 4.45 33.93 0.15 0.45 16 5 O -0.14 -1.37 18.46 -29.46 -0.54 -1.92 16 6 O -0.14 -1.21 15.21 -29.46 -0.45 -1.66 16 7 C 0.06 0.42 9.10 -39.17 -0.36 0.07 16 8 C -0.12 -1.01 5.87 -104.98 -0.62 -1.62 16 9 C 0.51 6.00 7.90 34.61 0.27 6.27 16 10 O -0.48 -6.89 16.14 -19.24 -0.31 -7.20 16 11 O -0.35 -4.57 9.47 -40.53 -0.38 -4.95 16 12 C 0.07 1.08 5.47 37.16 0.20 1.28 16 13 C -0.11 -2.04 5.53 -26.73 -0.15 -2.19 16 14 C 0.03 0.60 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.12 9.11 -34.44 -0.31 -14.44 16 16 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -25.96 13.29 55.43 0.74 -25.23 16 19 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 C 0.05 0.40 9.12 -39.17 -0.36 0.05 16 24 C -0.07 -0.51 6.82 -80.01 -0.55 -1.05 16 25 N 0.03 0.29 4.45 33.93 0.15 0.44 16 26 O -0.13 -1.39 18.46 -29.46 -0.54 -1.93 16 27 O -0.14 -1.28 15.22 -29.46 -0.45 -1.73 16 28 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.12 0.68 5.35 -51.93 -0.28 0.40 16 30 H 0.12 0.67 5.32 -51.94 -0.28 0.39 16 31 H 0.19 1.33 7.21 -52.49 -0.38 0.95 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.19 1.33 7.17 -52.49 -0.38 0.96 16 LS Contribution 354.07 15.07 5.34 5.34 Total: -1.00 -30.05 354.07 -8.11 -38.16 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: -3.81 Total: -4.18 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -2.97 Total: -11.49 kcal Atomic # 7 Polarization: -25.37 SS G_CDS: 1.04 Total: -24.34 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -2.68 Total: -19.39 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.05 -8.11 -38.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061368614.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.216 kcal (2) G-P(sol) polarization free energy of solvation -30.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds