Wall clock time and date at job start Tue Mar 31 2020 21:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38368 * 119.84820 * 2 1 4 4 N 1.48019 * 119.92464 * 0.04220 * 3 2 1 5 5 O 1.21800 * 120.00381 * 173.09789 * 4 3 2 6 6 O 1.21803 * 120.00296 * 353.10469 * 4 3 2 7 7 C 1.37943 * 120.15340 * 180.02562 * 3 2 1 8 8 C 1.39631 * 119.84469 * 0.02562 * 7 3 2 9 9 C 1.47722 * 120.14980 * 180.02562 * 8 7 3 10 10 O 1.21472 * 120.00116 * 359.97438 * 9 8 7 11 11 O 1.34713 * 120.00167 * 179.97438 * 9 8 7 12 12 C 1.45194 * 116.99963 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.46886 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.46918 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47099 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99869 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99978 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00074 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99676 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47170 * 60.00133 * 19 17 15 21 21 H 1.48502 * 109.46835 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47222 * 299.99718 * 19 17 15 23 23 C 1.39633 * 119.69979 * 0.27007 * 8 7 3 24 24 C 1.37943 * 119.84540 * 359.45129 * 23 8 7 25 25 N 1.48023 * 119.92141 * 180.29826 * 24 23 8 26 26 O 1.21796 * 120.00394 * 6.93322 * 25 24 23 27 27 O 1.21799 * 119.99608 * 186.92867 * 25 24 23 28 28 H 1.09003 * 109.47048 * 90.25469 * 1 2 3 29 29 H 1.09002 * 109.46826 * 210.25866 * 1 2 3 30 30 H 1.08998 * 109.47240 * 330.25417 * 1 2 3 31 31 H 1.07999 * 120.07982 * 179.97438 * 7 3 2 32 32 H 1.09001 * 109.47437 * 299.99851 * 12 11 9 33 33 H 1.08999 * 109.47140 * 59.99864 * 12 11 9 34 34 H 1.08999 * 109.47118 * 299.99618 * 13 12 11 35 35 H 1.08993 * 109.47023 * 60.00079 * 13 12 11 36 36 H 1.08993 * 109.47587 * 300.00001 * 14 13 12 37 37 H 1.09006 * 109.46911 * 60.00080 * 14 13 12 38 38 H 0.97004 * 119.99751 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.07437 * 179.72808 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1957 1.2001 0.0000 4 7 1.4505 2.4791 0.0009 5 8 2.0488 3.5324 0.1277 6 8 0.2390 2.4782 -0.1249 7 6 3.5751 1.2075 -0.0005 8 6 4.2764 0.0001 -0.0016 9 6 5.7537 0.0001 -0.0016 10 8 6.3610 1.0520 -0.0012 11 8 6.4273 -1.1666 -0.0021 12 6 7.8772 -1.0905 -0.0027 13 6 8.4620 -2.5044 -0.0039 14 6 9.9899 -2.4243 -0.0051 15 6 10.5660 -3.8168 -0.0056 16 1 9.9081 -4.6733 -0.0056 17 6 11.9329 -3.9974 -0.0062 18 7 12.7340 -2.9545 -0.0068 19 14 12.6468 -5.7236 -0.0062 20 1 12.1886 -6.4489 -1.2183 21 1 14.1298 -5.6459 -0.0075 22 1 12.1898 -6.4483 1.2066 23 6 3.5751 -1.2073 -0.0079 24 6 2.1957 -1.2000 -0.0015 25 7 1.4506 -2.4791 -0.0014 26 8 2.0493 -3.5327 0.1204 27 8 0.2387 -2.4778 -0.1231 28 1 -0.3633 -0.0046 -1.0277 29 1 -0.3633 -0.8877 0.5179 30 1 -0.3633 0.8922 0.5099 31 1 4.1114 2.1449 -0.0010 32 1 8.2128 -0.5582 -0.8927 33 1 8.2135 -0.5585 0.8873 34 1 8.1265 -3.0371 0.8859 35 1 8.1257 -3.0359 -0.8940 36 1 10.3252 -1.8917 -0.8950 37 1 10.3266 -1.8925 0.8849 38 1 13.6957 -3.0816 -0.0076 39 1 4.1114 -2.1447 -0.0132 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061368614.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:19 Heat of formation + Delta-G solvation = -69.007917 kcal Electronic energy + Delta-G solvation = -28056.219917 eV Core-core repulsion = 23550.077445 eV Total energy + Delta-G solvation = -4506.142472 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.96378 -43.44455 -42.07878 -40.67577 -38.24979 -38.05093 -37.95873 -36.00096 -34.94258 -34.16069 -33.66247 -30.31503 -29.10732 -28.14561 -27.50070 -25.66705 -24.57603 -24.03857 -22.78627 -22.21473 -20.88138 -20.35774 -19.80141 -19.44222 -19.11917 -18.90589 -18.74688 -18.48306 -18.02739 -17.91785 -17.17876 -17.00692 -16.50091 -15.92617 -15.34423 -15.00051 -14.52298 -14.32243 -14.19750 -14.13077 -14.04134 -13.81784 -13.71782 -12.91881 -12.83317 -12.78680 -12.69590 -12.56446 -12.51776 -12.47045 -12.40923 -12.17567 -12.15710 -11.70581 -11.53635 -11.48183 -11.45634 -11.28138 -11.08377 -10.57031 -8.22629 -6.33595 -1.91483 -1.72434 -0.78896 -0.44162 -0.12899 0.04033 0.73036 1.08074 1.42140 1.44089 1.52111 1.58419 2.39841 2.50307 2.54156 2.61919 2.89464 2.93493 3.11906 3.29802 3.59857 3.75165 3.96434 3.97302 4.09129 4.12980 4.37776 4.41184 4.52374 4.71138 4.74971 4.78364 4.92296 5.03610 5.18734 5.23678 5.48605 5.63638 5.80031 6.16450 6.18927 6.24172 6.25535 6.82629 7.36175 8.89081 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.016508 B = 0.002210 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.713491 B =12667.412236 C =14328.837448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.093 3.907 3 C -0.065 4.065 4 N 0.035 4.965 5 O -0.171 6.171 6 O -0.120 6.120 7 C 0.070 3.930 8 C -0.121 4.121 9 C 0.515 3.485 10 O -0.511 6.511 11 O -0.344 6.344 12 C 0.079 3.921 13 C -0.096 4.096 14 C 0.025 3.975 15 C -0.543 4.543 16 H 0.065 0.935 17 C 0.000 4.000 18 N -0.933 5.933 19 Si 0.965 3.035 20 H -0.266 1.266 21 H -0.286 1.286 22 H -0.266 1.266 23 C 0.068 3.932 24 C -0.066 4.066 25 N 0.034 4.966 26 O -0.168 6.168 27 O -0.123 6.123 28 H 0.130 0.870 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.191 0.809 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.070 0.930 36 H -0.002 1.002 37 H -0.002 1.002 38 H 0.264 0.736 39 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.617 7.103 -0.100 28.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.090 3.910 3 C -0.150 4.150 4 N 0.555 4.445 5 O -0.380 6.380 6 O -0.342 6.342 7 C 0.051 3.949 8 C -0.123 4.123 9 C 0.359 3.641 10 O -0.401 6.401 11 O -0.260 6.260 12 C 0.006 3.994 13 C -0.134 4.134 14 C -0.012 4.012 15 C -0.581 4.581 16 H 0.084 0.916 17 C -0.198 4.198 18 N -0.573 5.573 19 Si 0.789 3.211 20 H -0.191 1.191 21 H -0.211 1.211 22 H -0.191 1.191 23 C 0.049 3.951 24 C -0.151 4.151 25 N 0.553 4.447 26 O -0.378 6.378 27 O -0.344 6.344 28 H 0.148 0.852 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.208 0.792 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.017 0.983 37 H 0.017 0.983 38 H 0.073 0.927 39 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -26.395 7.442 -0.086 27.424 hybrid contribution 0.822 -0.458 -0.005 0.941 sum -25.573 6.984 -0.091 26.510 Atomic orbital electron populations 1.22384 0.84175 1.08820 1.07540 1.19954 1.01042 0.87745 0.82229 1.20264 0.91546 0.84138 1.19006 1.43215 1.01158 1.01974 0.98195 1.94658 1.70554 1.18620 1.54191 1.94469 0.95556 1.93140 1.51035 1.21495 0.91001 1.01076 0.81334 1.18511 0.90209 0.92270 1.11352 1.20586 0.87863 0.82428 0.73196 1.90924 1.70104 1.33212 1.45813 1.86485 1.23879 1.32561 1.83036 1.23341 0.73089 1.00095 1.02833 1.21492 0.95742 0.93191 1.02953 1.18932 0.90345 0.96282 0.95627 1.21605 0.92127 0.93553 1.50813 0.91635 1.25965 0.97863 1.01276 0.94694 1.70079 1.03948 1.31814 1.51461 0.85500 0.76918 0.79380 0.79278 1.19101 1.21121 1.19087 1.21866 0.91075 1.01503 0.80622 1.20408 0.91847 0.84079 1.18737 1.43256 1.01163 1.02042 0.98210 1.94675 1.70507 1.18564 1.54082 1.94467 0.95604 1.93198 1.51132 0.85236 0.86172 0.86141 0.79192 0.90936 0.90923 0.91145 0.91162 0.98331 0.98335 0.92715 0.78594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 7.89 71.24 0.56 -0.94 16 2 C 0.09 1.09 5.89 -19.80 -0.12 0.97 16 3 C -0.07 -0.87 6.82 36.34 0.25 -0.62 16 4 N 0.03 0.56 4.45 -46.55 -0.21 0.35 16 5 O -0.17 -3.27 18.46 18.89 0.35 -2.92 16 6 O -0.12 -1.84 15.21 18.88 0.29 -1.56 16 7 C 0.07 0.96 9.10 22.54 0.21 1.17 16 8 C -0.12 -1.86 5.87 -20.10 -0.12 -1.98 16 9 C 0.52 11.63 7.90 70.33 0.56 12.18 16 10 O -0.51 -14.28 16.14 19.93 0.32 -13.96 16 11 O -0.34 -8.66 9.47 -56.23 -0.53 -9.19 16 12 C 0.08 2.45 5.47 71.98 0.39 2.84 16 13 C -0.10 -3.52 5.53 30.60 0.17 -3.35 16 14 C 0.03 1.24 4.97 29.85 0.15 1.39 16 15 C -0.54 -29.35 9.11 25.60 0.23 -29.12 16 16 H 0.07 3.35 7.74 -2.91 -0.02 3.33 16 17 C 0.00 0.00 5.46 84.66 0.46 0.47 16 18 N -0.93 -55.18 13.29 21.45 0.28 -54.89 16 19 Si 0.96 42.76 29.54 68.60 2.03 44.78 16 20 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 21 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 C 0.07 0.91 9.12 22.54 0.21 1.12 16 24 C -0.07 -0.89 6.82 36.33 0.25 -0.64 16 25 N 0.03 0.56 4.45 -46.55 -0.21 0.35 16 26 O -0.17 -3.37 18.46 18.89 0.35 -3.02 16 27 O -0.12 -1.95 15.22 18.89 0.29 -1.67 16 28 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.12 1.04 5.35 -2.41 -0.01 1.02 16 30 H 0.12 1.01 5.32 -2.49 -0.01 1.00 16 31 H 0.19 2.53 7.21 -2.91 -0.02 2.51 16 32 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 37 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 38 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 39 H 0.20 2.43 7.17 -2.91 -0.02 2.41 16 Total: -1.00 -64.26 354.07 7.28 -56.99 By element: Atomic # 1 Polarization: 0.12 SS G_CDS: 1.12 Total: 1.24 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: 3.20 Total: -16.50 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.13 Total: -54.19 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: 1.06 Total: -32.32 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -64.26 7.28 -56.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061368614.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.021 kcal (2) G-P(sol) polarization free energy of solvation -64.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds