Wall clock time and date at job start Tue Mar 31 2020 21:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46875 * 2 1 4 4 C 1.50691 * 109.47283 * 120.00139 * 2 1 3 5 5 H 1.07997 * 119.99993 * 120.00064 * 4 2 1 6 6 C 1.37878 * 120.00443 * 300.00247 * 4 2 1 7 7 N 1.31513 * 120.00649 * 180.02562 * 6 4 2 8 8 Si 1.86805 * 119.99700 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.46881 * 90.00111 * 8 6 4 10 10 H 1.48492 * 109.47208 * 210.00249 * 8 6 4 11 11 H 1.48503 * 109.47005 * 330.00516 * 8 6 4 12 12 N 1.46499 * 109.47022 * 240.00416 * 2 1 3 13 13 C 1.34784 * 119.99971 * 84.99732 * 12 2 1 14 14 O 1.21274 * 119.99897 * 359.72827 * 13 12 2 15 15 C 1.50695 * 119.99635 * 179.97438 * 13 12 2 16 16 N 1.46506 * 109.46874 * 180.02562 * 15 13 12 17 17 C 1.35083 * 120.50518 * 90.00034 * 16 15 13 18 18 O 1.21297 * 120.13000 * 1.71467 * 17 16 15 19 19 C 1.50748 * 119.73695 * 181.69291 * 17 16 15 20 20 O 1.42995 * 109.64398 * 328.70212 * 19 17 16 21 21 C 1.36010 * 116.70993 * 46.37182 * 20 19 17 22 22 C 1.38391 * 120.64162 * 147.18411 * 21 20 19 23 23 C 1.38315 * 119.88930 * 180.02562 * 22 21 20 24 24 C 1.38382 * 120.24223 * 0.02562 * 23 22 21 25 25 Cl 1.73606 * 119.91266 * 180.02562 * 24 23 22 26 26 C 1.38386 * 120.17490 * 0.02562 * 24 23 22 27 27 C 1.38640 * 119.77027 * 359.67961 * 26 24 23 28 28 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47314 * 299.99734 * 1 2 3 30 30 H 1.09001 * 109.47831 * 59.99682 * 1 2 3 31 31 H 0.96997 * 120.00259 * 179.97438 * 7 6 4 32 32 H 0.96999 * 119.99984 * 264.99579 * 12 2 1 33 33 H 1.09005 * 109.47403 * 300.00056 * 15 13 12 34 34 H 1.09002 * 109.47422 * 60.00295 * 15 13 12 35 35 H 1.09007 * 109.44548 * 88.75423 * 19 17 16 36 36 H 1.08997 * 109.44226 * 208.68432 * 19 17 16 37 37 H 1.07995 * 120.05913 * 0.02562 * 22 21 20 38 38 H 1.07992 * 119.88079 * 180.02562 * 23 22 21 39 39 H 1.08004 * 120.10073 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5884 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 2.1380 -0.8591 3.5565 8 14 0.6258 1.2797 2.6542 9 1 -0.8021 0.8743 2.6994 10 1 0.9771 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0183 -0.6905 -1.1962 13 6 2.1469 -0.0181 -2.3572 14 8 1.8538 1.1574 -2.4128 15 6 2.6498 -0.7283 -3.5875 16 7 2.6995 0.2133 -4.7088 17 6 3.8157 0.9350 -4.9492 18 8 4.7988 0.7855 -4.2547 19 6 3.8349 1.9268 -6.0844 20 8 2.9841 1.4678 -7.1381 21 6 1.7527 1.0171 -6.7771 22 6 0.6655 1.1867 -7.6165 23 6 -0.5800 0.7227 -7.2335 24 6 -0.7432 0.0899 -6.0137 25 17 -2.3101 -0.4897 -5.5419 26 6 0.3394 -0.0821 -5.1690 27 6 1.5907 0.3760 -5.5516 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3635 0.5139 -0.8899 31 1 1.9040 -0.5276 4.4375 32 1 2.2490 -1.6317 -1.1527 33 1 3.6491 -1.1201 -3.3980 34 1 1.9776 -1.5506 -3.8326 35 1 3.4808 2.8939 -5.7274 36 1 4.8531 2.0292 -6.4595 37 1 0.7893 1.6805 -8.5689 38 1 -1.4281 0.8548 -7.8888 39 1 0.2105 -0.5758 -4.2171 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064318345.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:45 Heat of formation + Delta-G solvation = -65.671718 kcal Electronic energy + Delta-G solvation = -27134.515716 eV Core-core repulsion = 23069.227077 eV Total energy + Delta-G solvation = -4065.288638 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.087 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.89545 -39.46638 -38.94100 -37.95224 -36.66185 -35.77210 -34.95078 -32.50005 -31.05136 -30.65230 -30.15417 -29.16969 -26.67899 -25.22366 -23.89140 -23.07123 -21.47317 -19.96515 -19.73573 -19.40630 -17.81784 -17.62085 -17.22756 -16.26864 -16.06267 -15.94541 -15.59187 -15.22775 -15.04799 -14.78536 -14.52547 -14.16589 -14.11808 -13.81709 -13.31376 -13.09267 -13.04231 -12.94180 -12.36871 -12.25597 -12.21060 -11.85624 -11.80432 -11.37733 -11.29496 -11.17946 -10.87027 -10.74960 -10.24194 -10.22976 -9.78396 -9.36944 -9.29258 -8.93756 -8.80709 -8.28071 -8.14355 -6.24596 -4.27649 0.62852 0.78043 1.80076 1.96124 2.28985 2.87984 2.99019 3.20141 3.24296 3.32647 3.36604 3.64180 3.81969 4.24722 4.28055 4.58422 4.68004 4.72152 4.77086 4.89635 5.01198 5.10066 5.10312 5.17970 5.27432 5.35800 5.60796 5.82378 5.94256 6.08580 6.24492 6.30182 6.48858 6.51360 6.78204 6.95921 7.09446 7.18615 7.44640 7.47999 8.04378 8.42336 8.67556 8.78690 9.35552 10.87515 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.012482 B = 0.003772 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.604277 B = 7421.353865 C = 9020.116781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.238 3.762 3 H 0.048 0.952 4 C -0.537 4.537 5 H 0.081 0.919 6 C 0.080 3.920 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.263 1.263 12 N -0.695 5.695 13 C 0.487 3.513 14 O -0.543 6.543 15 C 0.083 3.917 16 N -0.530 5.530 17 C 0.495 3.505 18 O -0.497 6.497 19 C 0.054 3.946 20 O -0.300 6.300 21 C 0.079 3.921 22 C -0.095 4.095 23 C -0.106 4.106 24 C -0.024 4.024 25 Cl -0.059 7.059 26 C -0.110 4.110 27 C 0.125 3.875 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.035 0.965 31 H 0.268 0.732 32 H 0.397 0.603 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.986 1.311 -24.921 25.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.135 3.865 3 H 0.066 0.934 4 C -0.574 4.574 5 H 0.099 0.901 6 C -0.124 4.124 7 N -0.528 5.528 8 Si 0.715 3.285 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.344 5.344 13 C 0.270 3.730 14 O -0.421 6.421 15 C -0.042 4.042 16 N -0.254 5.254 17 C 0.283 3.717 18 O -0.370 6.370 19 C -0.024 4.024 20 O -0.215 6.215 21 C 0.033 3.967 22 C -0.114 4.114 23 C -0.126 4.126 24 C -0.052 4.052 25 Cl -0.030 7.030 26 C -0.131 4.131 27 C 0.030 3.970 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.230 0.770 33 H 0.142 0.858 34 H 0.132 0.868 35 H 0.121 0.879 36 H 0.166 0.834 37 H 0.166 0.834 38 H 0.162 0.838 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.596 2.024 -24.419 24.765 hybrid contribution -0.671 0.186 0.849 1.098 sum -4.267 2.210 -23.570 24.054 Atomic orbital electron populations 1.22443 0.99129 1.00914 0.99368 1.19123 0.90175 0.94649 0.82580 0.93433 1.21016 1.33425 1.14532 0.88474 0.90102 1.24818 0.95458 0.96644 0.95504 1.69860 1.44750 1.40072 0.98069 0.86886 0.80542 0.83628 0.77491 1.20230 1.22060 1.18780 1.46154 1.64794 1.13916 1.09554 1.20674 0.79243 0.88017 0.85088 1.90679 1.50713 1.15786 1.84951 1.21657 1.05856 0.91658 0.85015 1.45206 1.12118 1.40483 1.27631 1.21501 0.82284 0.81780 0.86163 1.90808 1.32911 1.64345 1.48941 1.23248 0.97333 0.96389 0.85454 1.86226 1.22898 1.79122 1.33222 1.18571 0.86198 0.98943 0.93022 1.20405 0.88925 1.01413 1.00672 1.20850 0.97598 0.98897 0.95222 1.20585 0.86980 1.01932 0.95689 1.98393 1.25299 1.87252 1.92077 1.20553 0.89141 1.03004 1.00418 1.17873 0.87942 1.00650 0.90562 0.92703 0.93367 0.94611 0.92217 0.76961 0.85831 0.86796 0.87855 0.83440 0.83358 0.83832 0.83987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 8.96 37.16 0.33 -3.19 16 2 C 0.24 5.62 2.15 -69.09 -0.15 5.47 16 3 H 0.05 1.26 6.64 -51.92 -0.34 0.92 16 4 C -0.54 -14.42 9.31 -34.44 -0.32 -14.74 16 5 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 6 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 7 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 8 Si 0.88 21.79 24.37 -169.99 -4.14 17.65 16 9 H -0.28 -6.54 6.87 56.52 0.39 -6.15 16 10 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 11 H -0.26 -6.48 6.53 56.52 0.37 -6.11 16 12 N -0.70 -13.34 5.07 -54.94 -0.28 -13.62 16 13 C 0.49 8.89 7.42 -10.98 -0.08 8.81 16 14 O -0.54 -11.97 16.09 5.56 0.09 -11.88 16 15 C 0.08 1.13 5.26 -5.19 -0.03 1.10 16 16 N -0.53 -7.34 2.21 -114.49 -0.25 -7.59 16 17 C 0.49 6.99 7.67 -10.82 -0.08 6.90 16 18 O -0.50 -8.53 16.74 5.54 0.09 -8.44 16 19 C 0.05 0.53 7.17 36.03 0.26 0.79 16 20 O -0.30 -3.07 10.45 -19.77 -0.21 -3.27 16 21 C 0.08 0.85 6.44 -39.15 -0.25 0.60 16 22 C -0.09 -0.79 10.00 -39.50 -0.39 -1.19 16 23 C -0.11 -0.88 9.82 -39.50 -0.39 -1.27 16 24 C -0.02 -0.26 6.32 -39.47 -0.25 -0.50 16 25 Cl -0.06 -0.61 28.95 -51.86 -1.50 -2.11 16 26 C -0.11 -1.32 8.91 -39.38 -0.35 -1.67 16 27 C 0.13 1.56 6.38 -83.50 -0.53 1.02 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.40 6.51 8.54 -40.82 -0.35 6.16 16 33 H 0.12 1.59 7.45 -51.93 -0.39 1.20 16 34 H 0.11 1.15 7.06 -51.93 -0.37 0.78 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.15 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.14 1.78 6.47 -52.48 -0.34 1.44 16 LS Contribution 344.01 15.07 5.18 5.18 Total: -1.00 -34.38 344.01 -6.67 -41.05 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -4.09 Total: 4.32 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -2.33 Total: 4.28 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.24 Total: -46.77 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.02 Total: -23.60 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.14 Total: 17.65 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.38 -6.67 -41.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318345.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.619 kcal (2) G-P(sol) polarization free energy of solvation -34.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds