Wall clock time and date at job start Tue Mar 31 2020 21:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31656 * 1 3 3 Si 1.86795 * 120.00196 * 2 1 4 4 H 1.48504 * 109.47075 * 269.99865 * 3 2 1 5 5 H 1.48502 * 109.47133 * 29.99673 * 3 2 1 6 6 H 1.48500 * 109.47265 * 149.99986 * 3 2 1 7 7 C 1.38687 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99798 * 0.02562 * 7 2 1 9 9 S 1.76201 * 120.00222 * 179.97438 * 7 2 1 10 10 C 1.76196 * 100.00293 * 174.96683 * 9 7 2 11 11 C 1.38998 * 120.12060 * 5.62122 * 10 9 7 12 12 C 1.38089 * 119.97224 * 180.27269 * 11 10 9 13 13 C 1.38390 * 120.23043 * 359.69967 * 12 11 10 14 14 C 1.38217 * 120.25272 * 0.02562 * 13 12 11 15 15 C 1.38685 * 120.01694 * 0.02562 * 14 13 12 16 16 N 1.39939 * 120.11646 * 179.97438 * 15 14 13 17 17 C 1.34776 * 119.99563 * 335.23880 * 16 15 14 18 18 O 1.21287 * 120.00406 * 354.26624 * 17 16 15 19 19 C 1.50702 * 119.99617 * 174.25680 * 17 16 15 20 20 N 1.46907 * 109.47068 * 180.02562 * 19 17 16 21 21 C 1.46472 * 110.99827 * 295.98243 * 20 19 17 22 22 C 1.53251 * 109.85743 * 162.23050 * 21 20 19 23 23 S 1.81904 * 108.50043 * 62.00495 * 22 21 20 24 24 C 1.81899 * 101.91547 * 308.69250 * 23 22 21 25 25 C 1.46464 * 110.99922 * 170.00261 * 20 19 17 26 26 H 0.97000 * 119.99887 * 0.02562 * 1 2 3 27 27 H 1.07992 * 120.01690 * 359.97438 * 11 10 9 28 28 H 1.08003 * 119.88436 * 179.72010 * 12 11 10 29 29 H 1.08004 * 119.87557 * 180.02562 * 13 12 11 30 30 H 1.07995 * 119.99448 * 179.97438 * 14 13 12 31 31 H 0.96993 * 119.99907 * 155.23877 * 16 15 14 32 32 H 1.08994 * 109.47001 * 60.00578 * 19 17 16 33 33 H 1.09000 * 109.47759 * 300.00423 * 19 17 16 34 34 H 1.08994 * 109.40807 * 282.35175 * 21 20 19 35 35 H 1.08997 * 109.40422 * 42.11751 * 21 20 19 36 36 H 1.09000 * 109.63489 * 302.30621 * 22 21 20 37 37 H 1.08999 * 109.79325 * 181.80190 * 22 21 20 38 38 H 1.09000 * 109.62875 * 291.60185 * 24 23 22 39 39 H 1.08998 * 109.79076 * 171.11147 * 24 23 22 40 40 H 1.09001 * 109.40660 * 317.88094 * 25 20 19 41 41 H 1.09001 * 109.40961 * 77.73056 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3166 0.0000 0.0000 3 14 2.2506 1.6177 0.0000 4 1 2.4981 2.0463 -1.4001 5 1 1.4480 2.6527 0.7000 6 1 3.5481 1.4401 0.7000 7 6 2.0100 -1.2011 0.0005 8 1 1.4699 -2.1364 0.0005 9 16 3.7720 -1.2012 -0.0001 10 6 4.0779 -2.9296 0.1531 11 6 3.0207 -3.8312 0.1153 12 6 3.2634 -5.1847 0.2414 13 6 4.5576 -5.6488 0.3993 14 6 5.6165 -4.7610 0.4325 15 6 5.3845 -3.3994 0.3079 16 7 6.4550 -2.4988 0.3417 17 6 7.5996 -2.8359 0.9683 18 8 7.6670 -3.8745 1.5910 19 6 8.7959 -1.9223 0.8951 20 7 9.9083 -2.5104 1.6531 21 6 9.5793 -2.6085 3.0770 22 6 10.5270 -3.5982 3.7633 23 16 12.2263 -2.9657 3.6178 24 6 12.3519 -2.6332 1.8339 25 6 11.1529 -1.7765 1.4133 26 1 -0.4850 0.8401 -0.0004 27 1 2.0094 -3.4730 -0.0077 28 1 2.4404 -5.8837 0.2164 29 1 4.7410 -6.7087 0.4969 30 1 6.6247 -5.1277 0.5563 31 1 6.3731 -1.6319 -0.0857 32 1 8.5388 -0.9522 1.3204 33 1 9.0930 -1.7953 -0.1459 34 1 9.6821 -1.6276 3.5409 35 1 8.5518 -2.9546 3.1882 36 1 10.4555 -4.5710 3.2769 37 1 10.2610 -3.6945 4.8160 38 1 12.3402 -3.5745 1.2843 39 1 13.2772 -2.0973 1.6226 40 1 11.2334 -1.5367 0.3530 41 1 11.1471 -0.8540 1.9939 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103468280.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:35 Heat of formation + Delta-G solvation = 9.606161 kcal Electronic energy + Delta-G solvation = -24129.952267 eV Core-core repulsion = 20648.557595 eV Total energy + Delta-G solvation = -3481.394673 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 338.086 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.50006 -38.58611 -37.34484 -34.54183 -32.78162 -31.83372 -31.54253 -30.43974 -29.19689 -26.31110 -26.00180 -23.88173 -22.64072 -22.21205 -21.29854 -20.11734 -18.54726 -17.37352 -17.10714 -16.71732 -16.22600 -15.87747 -15.54495 -15.26880 -15.17243 -14.56988 -14.25928 -14.12846 -13.88205 -13.81462 -13.39304 -13.37875 -12.91139 -12.77071 -12.60915 -12.39360 -12.10705 -12.00539 -11.85920 -11.45347 -11.31170 -11.17986 -11.03144 -10.68327 -10.22370 -10.03576 -9.86299 -9.54469 -9.44401 -9.00491 -8.86124 -8.73738 -7.93998 -7.79293 -6.84216 -6.55645 -4.32201 1.54105 1.69798 1.96205 2.27465 2.68022 2.72006 2.92094 3.06655 3.17010 3.31846 3.58581 4.01229 4.30205 4.39333 4.44592 4.55060 4.69123 4.82451 4.84887 4.86699 4.93793 5.03756 5.07824 5.16609 5.26299 5.49354 5.52558 5.57714 5.61556 5.73037 5.78867 6.02172 6.09652 6.45625 6.46050 6.65839 6.73014 6.79169 6.99889 7.12596 7.53384 7.59522 7.68266 8.20846 8.26603 8.85459 10.51683 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.015069 B = 0.002946 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.680053 B = 9502.024315 C =10862.548327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.099 3.901 3 Si 0.854 3.146 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.238 1.238 7 C -0.530 4.530 8 H 0.111 0.889 9 S -0.062 6.062 10 C -0.085 4.085 11 C -0.117 4.117 12 C -0.118 4.118 13 C -0.137 4.137 14 C -0.114 4.114 15 C 0.131 3.869 16 N -0.658 5.658 17 C 0.511 3.489 18 O -0.507 6.507 19 C 0.041 3.959 20 N -0.535 5.535 21 C 0.051 3.949 22 C -0.065 4.065 23 S -0.284 6.284 24 C -0.072 4.072 25 C 0.056 3.944 26 H 0.275 0.725 27 H 0.146 0.854 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.139 0.861 31 H 0.410 0.590 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.044 0.956 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.155 -3.270 1.604 20.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.112 4.112 3 Si 0.678 3.322 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.162 1.162 7 C -0.677 4.677 8 H 0.129 0.871 9 S 0.189 5.811 10 C -0.201 4.201 11 C -0.142 4.142 12 C -0.139 4.139 13 C -0.160 4.160 14 C -0.136 4.136 15 C 0.029 3.971 16 N -0.302 5.302 17 C 0.297 3.703 18 O -0.383 6.383 19 C -0.090 4.090 20 N -0.260 5.260 21 C -0.078 4.078 22 C -0.213 4.213 23 S -0.058 6.058 24 C -0.221 4.221 25 C -0.073 4.073 26 H 0.086 0.914 27 H 0.163 0.837 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.156 0.844 31 H 0.247 0.753 32 H 0.088 0.912 33 H 0.128 0.872 34 H 0.062 0.938 35 H 0.124 0.876 36 H 0.114 0.886 37 H 0.124 0.876 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.106 0.894 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 21.617 -3.021 2.594 21.981 hybrid contribution -1.878 0.835 -0.809 2.209 sum 19.739 -2.186 1.786 19.940 Atomic orbital electron populations 1.69918 1.05855 1.28239 1.45899 1.24791 0.94633 0.98936 0.92814 0.86825 0.81857 0.83544 0.80000 1.18953 1.19374 1.16174 1.22622 0.87011 0.98421 1.59622 0.87137 1.82482 1.12117 0.99403 1.87135 1.21850 0.93439 1.00022 1.04831 1.21431 0.99699 0.92294 1.00827 1.21019 0.96535 0.95287 1.01066 1.20842 0.92564 0.98772 1.03845 1.21087 1.00310 0.90661 1.01532 1.17212 0.85148 0.89210 1.05514 1.43396 1.12740 1.19325 1.54754 1.20472 0.83564 0.87493 0.78733 1.90637 1.82751 1.24921 1.39953 1.21911 0.90163 0.95958 1.00946 1.60755 1.01997 1.53487 1.09748 1.22388 1.01348 0.97885 0.86200 1.23455 0.91660 1.02049 1.04142 1.86899 1.21338 1.85605 1.11986 1.23456 1.00716 1.03855 0.94080 1.22246 0.88382 0.94703 1.02010 0.91432 0.83696 0.86734 0.86750 0.84362 0.75340 0.91192 0.87197 0.93759 0.87621 0.88629 0.87562 0.88911 0.87465 0.89420 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.26 13.97 55.48 0.78 -23.49 16 2 C 0.10 2.64 5.50 -17.46 -0.10 2.55 16 3 Si 0.85 19.23 27.73 -169.99 -4.71 14.52 16 4 H -0.26 -5.87 7.11 56.52 0.40 -5.46 16 5 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.24 -5.12 6.74 56.52 0.38 -4.74 16 7 C -0.53 -13.99 9.62 30.90 0.30 -13.69 16 8 H 0.11 3.07 5.04 -52.48 -0.26 2.80 16 9 S -0.06 -1.37 18.34 -107.50 -1.97 -3.35 16 10 C -0.08 -1.75 6.12 -38.75 -0.24 -1.99 16 11 C -0.12 -2.40 9.26 -39.35 -0.36 -2.76 16 12 C -0.12 -2.06 10.03 -39.58 -0.40 -2.46 16 13 C -0.14 -2.26 10.04 -39.53 -0.40 -2.65 16 14 C -0.11 -1.99 8.72 -39.42 -0.34 -2.33 16 15 C 0.13 2.38 6.44 -83.44 -0.54 1.84 16 16 N -0.66 -9.86 5.17 -9.70 -0.05 -9.91 16 17 C 0.51 6.95 7.17 -10.99 -0.08 6.87 16 18 O -0.51 -8.21 11.50 5.55 0.06 -8.15 16 19 C 0.04 0.39 5.46 -4.97 -0.03 0.37 16 20 N -0.53 -5.35 4.17 -236.48 -0.99 -6.33 16 21 C 0.05 0.54 4.95 -3.93 -0.02 0.52 16 22 C -0.06 -0.66 6.69 37.29 0.25 -0.41 16 23 S -0.28 -2.87 22.40 -107.50 -2.41 -5.28 16 24 C -0.07 -0.57 6.69 37.28 0.25 -0.32 16 25 C 0.06 0.43 5.42 -3.93 -0.02 0.41 16 26 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.15 3.21 4.93 -52.49 -0.26 2.95 16 28 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 29 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 30 H 0.14 2.37 5.79 -52.49 -0.30 2.06 16 31 H 0.41 5.56 7.66 -40.82 -0.31 5.24 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.11 0.81 7.83 -51.93 -0.41 0.40 16 34 H 0.04 0.46 7.91 -51.93 -0.41 0.05 16 35 H 0.11 1.36 5.61 -51.93 -0.29 1.06 16 36 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.52 7.76 -51.93 -0.40 0.12 16 41 H 0.05 0.40 7.91 -51.93 -0.41 -0.01 16 LS Contribution 351.90 15.07 5.30 5.30 Total: -1.00 -29.77 351.90 -10.89 -40.66 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -5.18 Total: 10.09 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -1.72 Total: -14.06 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: -0.26 Total: -39.73 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.06 Total: -8.15 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.71 Total: 14.52 kcal Atomic # 16 Polarization: -4.24 SS G_CDS: -4.38 Total: -8.62 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.77 -10.89 -40.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103468280.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.267 kcal (2) G-P(sol) polarization free energy of solvation -29.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds