Wall clock time and date at job start Tue Mar 31 2020 21:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31656 * 1 3 3 Si 1.86795 * 120.00196 * 2 1 4 4 H 1.48504 * 109.47075 * 269.99865 * 3 2 1 5 5 H 1.48502 * 109.47133 * 29.99673 * 3 2 1 6 6 H 1.48500 * 109.47265 * 149.99986 * 3 2 1 7 7 C 1.38687 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99798 * 0.02562 * 7 2 1 9 9 S 1.76201 * 120.00222 * 179.97438 * 7 2 1 10 10 C 1.76196 * 100.00293 * 174.96683 * 9 7 2 11 11 C 1.38998 * 120.12060 * 5.62122 * 10 9 7 12 12 C 1.38089 * 119.97224 * 180.27269 * 11 10 9 13 13 C 1.38390 * 120.23043 * 359.69967 * 12 11 10 14 14 C 1.38217 * 120.25272 * 0.02562 * 13 12 11 15 15 C 1.38685 * 120.01694 * 0.02562 * 14 13 12 16 16 N 1.39939 * 120.11646 * 179.97438 * 15 14 13 17 17 C 1.34776 * 119.99563 * 335.23880 * 16 15 14 18 18 O 1.21287 * 120.00406 * 354.26624 * 17 16 15 19 19 C 1.50702 * 119.99617 * 174.25680 * 17 16 15 20 20 N 1.46907 * 109.47068 * 180.02562 * 19 17 16 21 21 C 1.46472 * 110.99827 * 295.98243 * 20 19 17 22 22 C 1.53251 * 109.85743 * 162.23050 * 21 20 19 23 23 S 1.81904 * 108.50043 * 62.00495 * 22 21 20 24 24 C 1.81899 * 101.91547 * 308.69250 * 23 22 21 25 25 C 1.46464 * 110.99922 * 170.00261 * 20 19 17 26 26 H 0.97000 * 119.99887 * 0.02562 * 1 2 3 27 27 H 1.07992 * 120.01690 * 359.97438 * 11 10 9 28 28 H 1.08003 * 119.88436 * 179.72010 * 12 11 10 29 29 H 1.08004 * 119.87557 * 180.02562 * 13 12 11 30 30 H 1.07995 * 119.99448 * 179.97438 * 14 13 12 31 31 H 0.96993 * 119.99907 * 155.23877 * 16 15 14 32 32 H 1.08994 * 109.47001 * 60.00578 * 19 17 16 33 33 H 1.09000 * 109.47759 * 300.00423 * 19 17 16 34 34 H 1.08994 * 109.40807 * 282.35175 * 21 20 19 35 35 H 1.08997 * 109.40422 * 42.11751 * 21 20 19 36 36 H 1.09000 * 109.63489 * 302.30621 * 22 21 20 37 37 H 1.08999 * 109.79325 * 181.80190 * 22 21 20 38 38 H 1.09000 * 109.62875 * 291.60185 * 24 23 22 39 39 H 1.08998 * 109.79076 * 171.11147 * 24 23 22 40 40 H 1.09001 * 109.40660 * 317.88094 * 25 20 19 41 41 H 1.09001 * 109.40961 * 77.73056 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3166 0.0000 0.0000 3 14 2.2506 1.6177 0.0000 4 1 2.4981 2.0463 -1.4001 5 1 1.4480 2.6527 0.7000 6 1 3.5481 1.4401 0.7000 7 6 2.0100 -1.2011 0.0005 8 1 1.4699 -2.1364 0.0005 9 16 3.7720 -1.2012 -0.0001 10 6 4.0779 -2.9296 0.1531 11 6 3.0207 -3.8312 0.1153 12 6 3.2634 -5.1847 0.2414 13 6 4.5576 -5.6488 0.3993 14 6 5.6165 -4.7610 0.4325 15 6 5.3845 -3.3994 0.3079 16 7 6.4550 -2.4988 0.3417 17 6 7.5996 -2.8359 0.9683 18 8 7.6670 -3.8745 1.5910 19 6 8.7959 -1.9223 0.8951 20 7 9.9083 -2.5104 1.6531 21 6 9.5793 -2.6085 3.0770 22 6 10.5270 -3.5982 3.7633 23 16 12.2263 -2.9657 3.6178 24 6 12.3519 -2.6332 1.8339 25 6 11.1529 -1.7765 1.4133 26 1 -0.4850 0.8401 -0.0004 27 1 2.0094 -3.4730 -0.0077 28 1 2.4404 -5.8837 0.2164 29 1 4.7410 -6.7087 0.4969 30 1 6.6247 -5.1277 0.5563 31 1 6.3731 -1.6319 -0.0857 32 1 8.5388 -0.9522 1.3204 33 1 9.0930 -1.7953 -0.1459 34 1 9.6821 -1.6276 3.5409 35 1 8.5518 -2.9546 3.1882 36 1 10.4555 -4.5710 3.2769 37 1 10.2610 -3.6945 4.8160 38 1 12.3402 -3.5745 1.2843 39 1 13.2772 -2.0973 1.6226 40 1 11.2334 -1.5367 0.3530 41 1 11.1471 -0.8540 1.9939 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103468280.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:33 Heat of formation + Delta-G solvation = -8.769975 kcal Electronic energy + Delta-G solvation = -24130.749116 eV Core-core repulsion = 20648.557595 eV Total energy + Delta-G solvation = -3482.191522 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 338.086 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.64590 -39.71113 -38.39153 -35.80193 -34.78077 -32.53226 -32.40236 -31.91721 -30.44190 -28.04712 -27.16279 -24.59780 -24.03061 -23.52853 -22.12610 -21.28533 -20.23642 -18.44018 -18.28626 -17.78617 -17.66884 -17.16698 -16.82014 -16.39542 -16.16488 -15.59836 -15.47014 -15.33619 -15.04248 -14.88048 -14.65207 -14.46877 -14.18468 -13.97917 -13.71168 -13.47693 -13.22545 -13.09482 -12.99063 -12.93632 -12.82884 -12.55036 -12.33925 -11.81239 -11.61679 -11.42589 -11.32269 -10.87368 -10.83348 -10.58061 -10.48858 -9.49203 -9.21210 -8.71853 -8.57462 -8.52299 -6.30818 0.30919 0.47931 0.82563 1.01012 1.28989 1.39310 1.55360 1.58394 1.60772 1.90433 2.16500 2.49431 2.76823 2.79731 2.93906 3.57614 3.81665 3.90236 4.03973 4.10560 4.22144 4.22862 4.26461 4.33801 4.41950 4.47356 4.50310 4.60698 4.64717 4.70170 4.80247 4.84837 4.97330 5.02019 5.28865 5.39289 5.57091 5.66696 5.69070 5.73662 5.95642 6.11178 6.21199 6.43687 6.83338 7.09420 8.54556 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.015069 B = 0.002946 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.680053 B = 9502.024315 C =10862.548327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.045 3.955 3 Si 0.913 3.087 4 H -0.256 1.256 5 H -0.263 1.263 6 H -0.220 1.220 7 C -0.551 4.551 8 H 0.080 0.920 9 S -0.046 6.046 10 C -0.115 4.115 11 C -0.137 4.137 12 C -0.122 4.122 13 C -0.120 4.120 14 C -0.121 4.121 15 C 0.139 3.861 16 N -0.658 5.658 17 C 0.510 3.490 18 O -0.534 6.534 19 C 0.048 3.952 20 N -0.547 5.547 21 C 0.056 3.944 22 C -0.058 4.058 23 S -0.313 6.313 24 C -0.064 4.064 25 C 0.057 3.943 26 H 0.279 0.721 27 H 0.117 0.883 28 H 0.139 0.861 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.417 0.583 32 H 0.089 0.911 33 H 0.141 0.859 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.129 0.871 40 H 0.114 0.886 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.342 -2.873 1.147 23.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.161 4.161 3 Si 0.734 3.266 4 H -0.180 1.180 5 H -0.188 1.188 6 H -0.143 1.143 7 C -0.697 4.697 8 H 0.098 0.902 9 S 0.203 5.797 10 C -0.230 4.230 11 C -0.162 4.162 12 C -0.142 4.142 13 C -0.142 4.142 14 C -0.143 4.143 15 C 0.037 3.963 16 N -0.304 5.304 17 C 0.299 3.701 18 O -0.410 6.410 19 C -0.082 4.082 20 N -0.272 5.272 21 C -0.073 4.073 22 C -0.207 4.207 23 S -0.088 6.088 24 C -0.212 4.212 25 C -0.071 4.071 26 H 0.089 0.911 27 H 0.134 0.866 28 H 0.157 0.843 29 H 0.169 0.831 30 H 0.164 0.836 31 H 0.255 0.745 32 H 0.106 0.894 33 H 0.159 0.841 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.128 0.872 38 H 0.108 0.892 39 H 0.147 0.853 40 H 0.132 0.868 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 24.846 -2.657 2.136 25.079 hybrid contribution -2.782 0.462 -0.653 2.895 sum 22.064 -2.195 1.483 22.223 Atomic orbital electron populations 1.70030 1.07698 1.29381 1.47770 1.25736 0.95447 1.02637 0.92328 0.85922 0.81225 0.78857 0.80631 1.18012 1.18761 1.14324 1.22890 0.90106 0.97642 1.59111 0.90200 1.81901 1.07976 1.01153 1.88714 1.21909 0.94679 0.99040 1.07413 1.21374 0.98554 0.94029 1.02251 1.21258 0.98103 0.94267 1.00572 1.21273 0.91562 1.00540 1.00859 1.21322 1.01025 0.90455 1.01493 1.17338 0.85074 0.90217 1.03663 1.43496 1.12460 1.19235 1.55162 1.21257 0.83843 0.87628 0.77346 1.90625 1.83122 1.26416 1.40839 1.21974 0.88215 0.95189 1.02854 1.60741 1.02914 1.54522 1.09059 1.22252 0.99984 0.97928 0.87150 1.23360 0.91768 1.01242 1.04307 1.87000 1.21263 1.85658 1.14860 1.23553 1.01965 1.04104 0.91602 1.22328 0.86850 0.94289 1.03679 0.91144 0.86558 0.84270 0.83140 0.83595 0.74508 0.89369 0.84112 0.93400 0.89974 0.89960 0.87176 0.89249 0.85309 0.86760 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.21 13.97 21.63 0.30 -52.91 16 2 C 0.04 2.45 5.50 84.83 0.47 2.92 16 3 Si 0.91 39.63 27.73 68.60 1.90 41.53 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 5 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.22 -8.83 6.74 99.48 0.67 -8.16 16 7 C -0.55 -30.23 9.62 67.93 0.65 -29.58 16 8 H 0.08 4.77 5.04 -2.91 -0.01 4.75 16 9 S -0.05 -2.03 18.34 -56.49 -1.04 -3.07 16 10 C -0.11 -4.75 6.12 22.81 0.14 -4.61 16 11 C -0.14 -5.76 9.26 22.42 0.21 -5.56 16 12 C -0.12 -4.13 10.03 22.27 0.22 -3.91 16 13 C -0.12 -3.67 10.04 22.30 0.22 -3.44 16 14 C -0.12 -3.99 8.72 22.37 0.19 -3.80 16 15 C 0.14 4.91 6.44 38.31 0.25 5.16 16 16 N -0.66 -18.53 5.17 -303.00 -1.57 -20.09 16 17 C 0.51 12.75 7.17 87.66 0.63 13.38 16 18 O -0.53 -16.43 11.50 -3.05 -0.04 -16.46 16 19 C 0.05 0.76 5.46 85.56 0.47 1.22 16 20 N -0.55 -9.39 4.17 -902.09 -3.76 -13.15 16 21 C 0.06 1.12 4.95 86.47 0.43 1.55 16 22 C -0.06 -1.14 6.69 72.07 0.48 -0.65 16 23 S -0.31 -5.86 22.40 -56.49 -1.27 -7.13 16 24 C -0.06 -0.82 6.69 72.06 0.48 -0.34 16 25 C 0.06 0.67 5.42 86.47 0.47 1.14 16 26 H 0.28 14.99 8.31 -92.71 -0.77 14.22 16 27 H 0.12 5.55 4.93 -2.91 -0.01 5.54 16 28 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 29 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 30 H 0.15 4.66 5.79 -2.91 -0.02 4.65 16 31 H 0.42 10.43 7.66 -92.71 -0.71 9.72 16 32 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.14 1.40 7.83 -2.39 -0.02 1.38 16 34 H 0.05 0.90 7.91 -2.39 -0.02 0.88 16 35 H 0.08 2.04 5.61 -2.39 -0.01 2.03 16 36 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.11 0.79 7.76 -2.39 -0.02 0.77 16 41 H 0.05 0.64 7.91 -2.39 -0.02 0.63 16 Total: -1.00 -67.30 351.90 0.18 -67.12 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: 0.33 Total: 30.69 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 5.31 Total: -26.52 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -5.03 Total: -86.16 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.04 Total: -16.46 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 1.90 Total: 41.53 kcal Atomic # 16 Polarization: -7.90 SS G_CDS: -2.30 Total: -10.20 kcal Total: -67.30 0.18 -67.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103468280.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.351 kcal (2) G-P(sol) polarization free energy of solvation -67.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds