Wall clock time and date at job start Tue Mar 31 2020 20:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99909 * 2 1 4 4 H 1.48508 * 109.47082 * 239.99651 * 3 2 1 5 5 H 1.48506 * 109.47003 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47658 * 119.99602 * 3 2 1 7 7 C 1.37876 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99893 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00285 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47073 * 179.97438 * 9 7 2 11 11 C 1.53009 * 109.46990 * 179.97438 * 10 9 7 12 12 S 1.81397 * 109.47235 * 179.97438 * 11 10 9 13 13 O 1.42105 * 110.54275 * 68.37271 * 12 11 10 14 14 O 1.42101 * 110.54298 * 291.62373 * 12 11 10 15 15 O 1.52200 * 104.44908 * 179.97438 * 12 11 10 16 16 C 1.35900 * 113.99669 * 75.00458 * 15 12 11 17 17 C 1.38795 * 120.02650 * 89.99577 * 16 15 12 18 18 C 1.38163 * 120.07287 * 179.97438 * 17 16 15 19 19 C 1.38173 * 120.12248 * 359.97438 * 18 17 16 20 20 C 1.38835 * 120.04523 * 359.97438 * 19 18 17 21 21 N 1.40264 * 120.03631 * 180.02562 * 20 19 18 22 22 C 1.35065 * 127.39174 * 5.00306 * 21 20 19 23 23 N 1.30727 * 107.27696 * 180.02562 * 22 21 20 24 24 N 1.28417 * 110.64668 * 359.97438 * 23 22 21 25 25 N 1.28944 * 110.20585 * 359.71126 * 24 23 22 26 26 C 1.38602 * 120.01986 * 269.71839 * 16 15 12 27 27 H 0.96996 * 119.99810 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47240 * 59.99562 * 9 7 2 29 29 H 1.09000 * 109.46699 * 299.99500 * 9 7 2 30 30 H 1.08995 * 109.47375 * 59.99731 * 10 9 7 31 31 H 1.09000 * 109.47020 * 299.99390 * 10 9 7 32 32 H 1.09004 * 109.47149 * 59.99749 * 11 10 9 33 33 H 1.09000 * 109.46805 * 299.99601 * 11 10 9 34 34 H 1.07996 * 119.96565 * 0.02562 * 17 16 15 35 35 H 1.08003 * 119.93843 * 180.02562 * 18 17 16 36 36 H 1.08007 * 119.98056 * 180.02562 * 19 18 17 37 37 H 1.08011 * 126.35933 * 359.97438 * 22 21 20 38 38 H 1.08003 * 120.06292 * 0.03155 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 16 2.6592 -6.3659 0.0004 13 8 3.3569 -6.4261 1.2369 14 8 3.3550 -6.4263 -1.2371 15 8 1.7857 -7.6123 0.0018 16 6 1.2042 -7.8810 -1.1968 17 6 1.8573 -8.6845 -2.1210 18 6 1.2668 -8.9587 -3.3396 19 6 0.0245 -8.4346 -3.6417 20 6 -0.6337 -7.6312 -2.7204 21 7 -1.8951 -7.0997 -3.0271 22 6 -2.6439 -7.3450 -4.1241 23 7 -3.7428 -6.6465 -4.0082 24 7 -3.7401 -5.9766 -2.9126 25 7 -2.6539 -6.2021 -2.2554 26 6 -0.0441 -7.3575 -1.4947 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8904 30 1 2.8721 -3.6042 0.8904 31 1 2.8720 -3.6043 -0.8895 32 1 0.8534 -5.0451 -0.8886 33 1 0.8541 -5.0446 0.8914 34 1 2.8278 -9.0965 -1.8871 35 1 1.7767 -9.5845 -4.0570 36 1 -0.4353 -8.6508 -4.5948 37 1 -2.3828 -7.9967 -4.9450 38 1 -0.5556 -6.7353 -0.7752 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104106917.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:02 Heat of formation + Delta-G solvation = 44.256304 kcal Electronic energy + Delta-G solvation = -26550.735059 eV Core-core repulsion = 22524.549715 eV Total energy + Delta-G solvation = -4026.185344 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.088 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.57882 -41.53176 -39.04273 -37.23354 -36.13746 -35.38550 -34.79402 -32.74159 -32.27926 -31.38822 -30.50042 -27.96022 -25.68039 -24.79598 -23.84767 -23.12400 -22.48853 -21.15453 -20.51045 -19.17599 -18.02824 -17.63027 -17.37735 -17.02112 -16.96254 -16.46783 -16.25892 -15.73830 -15.40625 -14.60178 -14.50904 -14.34754 -14.01728 -13.93511 -13.44095 -12.96341 -12.84657 -12.66184 -12.52208 -12.38171 -12.23831 -12.17257 -12.00468 -11.92598 -11.82699 -11.38563 -11.34101 -10.94172 -10.91817 -10.87310 -10.48091 -10.01357 -9.76404 -9.45345 -9.30975 -9.16830 -8.41385 -6.05718 -4.09858 -0.29838 -0.08980 0.54482 1.08258 1.24904 1.91748 1.94493 2.79315 3.31484 3.35928 3.38293 3.48517 3.61709 3.70174 3.83968 4.08527 4.11958 4.27442 4.35752 4.41214 4.50261 4.71134 4.80520 4.96403 4.97575 5.01465 5.29534 5.30574 5.37297 5.50176 5.53387 5.73527 5.78054 6.09974 6.17400 6.33443 6.79827 7.54521 7.63434 7.90900 8.03021 8.30271 8.95906 9.54995 11.05264 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.009135 B = 0.003889 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3064.436282 B = 7198.542670 C = 9642.858963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.102 4.102 11 C -0.630 4.630 12 S 2.579 3.421 13 O -0.924 6.924 14 O -0.953 6.953 15 O -0.667 6.667 16 C 0.101 3.899 17 C -0.084 4.084 18 C -0.074 4.074 19 C -0.109 4.109 20 C 0.152 3.848 21 N -0.334 5.334 22 C 0.229 3.771 23 N -0.328 5.328 24 N -0.026 5.026 25 N -0.063 5.063 26 C -0.119 4.119 27 H 0.263 0.737 28 H 0.020 0.980 29 H 0.022 0.978 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.128 0.872 33 H 0.137 0.863 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.148 0.852 37 H 0.242 0.758 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.503 -23.771 -9.765 25.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.141 4.141 11 C -0.760 4.760 12 S 2.677 3.323 13 O -0.923 6.923 14 O -0.951 6.951 15 O -0.625 6.625 16 C 0.059 3.941 17 C -0.104 4.104 18 C -0.093 4.093 19 C -0.130 4.130 20 C 0.059 3.941 21 N -0.124 5.124 22 C -0.068 4.068 23 N -0.175 5.175 24 N -0.021 5.021 25 N -0.048 5.048 26 C -0.141 4.141 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.146 0.854 33 H 0.156 0.844 34 H 0.170 0.830 35 H 0.174 0.826 36 H 0.165 0.835 37 H 0.258 0.742 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.027 -23.224 -8.919 24.899 hybrid contribution 0.638 0.887 -0.100 1.097 sum -0.389 -22.337 -9.019 24.092 Atomic orbital electron populations 1.69950 1.06078 1.26974 1.50125 1.25017 0.94874 0.99352 0.95028 0.86617 0.79571 0.82865 0.78733 1.20151 1.21201 1.20088 1.21176 0.93163 0.90814 1.51615 0.92409 1.19062 0.93450 0.90321 0.97884 1.21503 0.99354 0.91078 1.02174 1.30827 1.16649 1.16720 1.11798 1.06009 0.76112 0.75350 0.74780 1.93631 1.69296 1.84507 1.44832 1.93618 1.71524 1.84360 1.45625 1.85797 1.72264 1.64307 1.40097 1.17643 0.92781 1.01558 0.82164 1.21565 1.00735 0.95559 0.92560 1.20960 0.93571 0.98685 0.96084 1.21091 0.95878 0.97051 0.99024 1.17085 0.82865 0.98760 0.95351 1.49097 1.14964 1.32368 1.16012 1.27485 0.87727 0.99095 0.92475 1.74525 1.19421 1.09917 1.13682 1.78174 1.11476 1.13302 0.99137 1.82846 1.00033 1.06184 1.15707 1.21119 0.94585 1.01645 0.96788 0.92759 0.96139 0.95950 0.91248 0.91380 0.85382 0.84439 0.82958 0.82575 0.83452 0.74224 0.82030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.79 4.97 -27.89 -0.14 0.65 16 10 C -0.10 -2.03 5.16 -26.73 -0.14 -2.17 16 11 C -0.63 -9.71 5.47 37.16 0.20 -9.51 16 12 S 2.58 37.66 5.17 -107.50 -0.56 37.10 16 13 O -0.92 -16.34 18.09 -67.04 -1.21 -17.55 16 14 O -0.95 -14.83 16.26 -67.03 -1.09 -15.92 16 15 O -0.67 -8.22 10.05 -51.75 -0.52 -8.74 16 16 C 0.10 1.07 4.79 -39.24 -0.19 0.88 16 17 C -0.08 -0.67 9.04 -39.40 -0.36 -1.02 16 18 C -0.07 -0.36 10.03 -39.63 -0.40 -0.75 16 19 C -0.11 -0.52 9.49 -39.38 -0.37 -0.89 16 20 C 0.15 1.29 6.70 -83.59 -0.56 0.73 16 21 N -0.33 -3.31 3.85 -11.75 -0.05 -3.35 16 22 C 0.23 1.71 12.15 -90.17 -1.10 0.62 16 23 N -0.33 -3.85 12.15 29.64 0.36 -3.48 16 24 N -0.03 -0.38 13.39 60.35 0.81 0.43 16 25 N -0.06 -0.87 13.35 60.35 0.81 -0.07 16 26 C -0.12 -1.22 8.11 -39.26 -0.32 -1.54 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.13 1.80 6.63 -51.92 -0.34 1.45 16 33 H 0.14 1.89 8.14 -51.92 -0.42 1.47 16 34 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.16 0.19 8.06 -52.48 -0.42 -0.23 16 36 H 0.15 0.10 6.90 -52.48 -0.36 -0.27 16 37 H 0.24 0.23 7.21 -52.48 -0.38 -0.15 16 38 H 0.16 1.70 7.24 -52.48 -0.38 1.32 16 LS Contribution 347.80 15.07 5.24 5.24 Total: -1.00 -38.36 347.80 -8.23 -46.59 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: -3.97 Total: -4.21 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: -3.77 Total: -26.62 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 2.66 Total: -32.53 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -2.82 Total: -42.22 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 37.66 SS G_CDS: -0.56 Total: 37.10 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -38.36 -8.23 -46.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104106917.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.845 kcal (2) G-P(sol) polarization free energy of solvation -38.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds