Wall clock time and date at job start Tue Mar 31 2020 21:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39687 * 120.17090 * 283.37235 * 3 2 1 5 5 C 1.37874 * 119.86926 * 179.72580 * 4 3 2 6 6 S 1.76202 * 119.88791 * 180.26035 * 5 4 3 7 7 O 1.42101 * 106.40095 * 203.53764 * 6 5 4 8 8 O 1.42096 * 106.40452 * 336.45905 * 6 5 4 9 9 N 1.65599 * 107.21981 * 90.00025 * 6 5 4 10 10 C 1.46922 * 120.63066 * 269.72018 * 9 6 5 11 11 C 1.53630 * 108.54567 * 126.36907 * 10 9 6 12 12 C 1.53035 * 109.24277 * 54.85356 * 11 10 9 13 13 C 1.50699 * 109.45094 * 178.49810 * 12 11 10 14 14 H 1.07998 * 119.99903 * 120.05807 * 13 12 11 15 15 C 1.37882 * 119.99974 * 300.06752 * 13 12 11 16 16 N 1.31514 * 119.99934 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 119.99964 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.46757 * 90.00181 * 17 15 13 19 19 H 1.48497 * 109.47399 * 210.00148 * 17 15 13 20 20 H 1.48500 * 109.47142 * 330.00553 * 17 15 13 21 21 C 1.53043 * 109.53979 * 298.51328 * 12 11 10 22 22 C 1.46926 * 120.63218 * 89.99483 * 9 6 5 23 23 C 1.38440 * 120.22165 * 0.27996 * 5 4 3 24 24 C 1.38233 * 120.34404 * 0.02562 * 23 5 4 25 25 C 1.38283 * 120.12684 * 359.97438 * 24 23 5 26 26 F 1.35095 * 120.11423 * 179.97438 * 25 24 23 27 27 H 1.08002 * 120.06757 * 0.02562 * 4 3 2 28 28 H 1.08997 * 109.58803 * 246.20025 * 10 9 6 29 29 H 1.09000 * 109.58972 * 6.62333 * 10 9 6 30 30 H 1.08999 * 109.63186 * 294.86608 * 11 10 9 31 31 H 1.08997 * 109.45853 * 174.73989 * 11 10 9 32 32 H 1.09002 * 109.46143 * 58.53094 * 12 11 10 33 33 H 0.96991 * 120.00164 * 180.02562 * 16 15 13 34 34 H 1.08996 * 109.49704 * 301.41435 * 21 12 11 35 35 H 1.09002 * 109.52582 * 181.32993 * 21 12 11 36 36 H 1.09000 * 109.58806 * 353.37928 * 22 9 6 37 37 H 1.09006 * 109.58564 * 113.65390 * 22 9 6 38 38 H 1.08002 * 119.83041 * 180.02562 * 23 5 4 39 39 H 1.08003 * 119.93579 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2702 -0.2783 1.1749 5 6 4.6489 -0.2816 1.1665 6 16 5.5351 -0.6402 2.6467 7 8 6.8191 -0.0498 2.4986 8 8 4.6588 -0.3353 3.7229 9 7 5.7757 -2.2781 2.6893 10 6 4.7948 -3.1623 3.3332 11 6 4.3863 -4.2516 2.3299 12 6 5.6407 -4.9677 1.8243 13 6 5.2426 -6.0619 0.8675 14 1 5.6000 -6.0446 -0.1515 15 6 4.4220 -7.0849 1.2931 16 7 4.0743 -8.0395 0.4580 17 14 3.8043 -7.1150 3.0557 18 1 2.5167 -6.3801 3.1414 19 1 3.6007 -8.5219 3.4850 20 1 4.8042 -6.4668 3.9418 21 6 6.5469 -3.9660 1.1048 22 6 6.9772 -2.8741 2.0893 23 6 5.3393 -0.0037 -0.0008 24 6 4.6535 0.2798 -1.1671 25 6 3.2708 0.2870 -1.1750 26 9 2.6008 0.5646 -2.3148 27 1 2.7342 -0.4958 2.0869 28 1 5.2410 -3.6225 4.2148 29 1 3.9178 -2.5844 3.6246 30 1 3.8629 -3.7970 1.4887 31 1 3.7303 -4.9702 2.8212 32 1 6.1768 -5.4009 2.6687 33 1 3.4967 -8.7590 0.7572 34 1 6.0032 -3.5142 0.2752 35 1 7.4291 -4.4809 0.7242 36 1 7.5406 -2.1059 1.5597 37 1 7.5991 -3.3090 2.8718 38 1 6.4193 -0.0084 -0.0003 39 1 5.1988 0.4961 -2.0739 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397338076.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:03 Heat of formation + Delta-G solvation = -54.935454 kcal Electronic energy + Delta-G solvation = -27426.305418 eV Core-core repulsion = 23375.898834 eV Total energy + Delta-G solvation = -4050.406583 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.089 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.62289 -39.68379 -38.18514 -37.44096 -36.76798 -35.98476 -33.54795 -32.08268 -31.46418 -31.34834 -30.70224 -26.07061 -24.76647 -23.80103 -23.04202 -22.28501 -20.54314 -19.62158 -18.61683 -18.03149 -17.50304 -17.32880 -16.93907 -16.72538 -16.33138 -15.72255 -14.86430 -14.76278 -14.38077 -14.22128 -14.12000 -13.96475 -13.79146 -13.58928 -13.28416 -13.26195 -13.08617 -12.99696 -12.75017 -12.58964 -12.36752 -12.23785 -11.89325 -11.82505 -11.49846 -11.28810 -11.09950 -10.84326 -10.28513 -10.12137 -9.84701 -9.76887 -9.66298 -9.45118 -9.19015 -8.65211 -8.60862 -6.14924 -4.14715 -0.08596 0.23376 0.40321 2.24550 2.27540 2.84553 3.16471 3.18913 3.29128 3.29445 3.33580 3.45474 3.61476 4.01632 4.15319 4.32602 4.46481 4.69478 4.80283 4.89992 5.14058 5.15770 5.27929 5.34318 5.41809 5.44804 5.58887 5.64213 5.79200 5.83781 5.96465 6.04488 6.05901 6.23663 6.52298 6.57457 6.74387 6.82434 7.09517 7.10584 7.40869 7.67477 8.43311 8.89065 9.47234 10.98306 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.010485 B = 0.004804 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.965223 B = 5827.143678 C = 6942.424161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C 0.250 3.750 3 C -0.078 4.078 4 C 0.059 3.941 5 C -0.690 4.690 6 S 2.692 3.308 7 O -0.952 6.952 8 O -0.954 6.954 9 N -0.986 5.986 10 C 0.114 3.886 11 C -0.138 4.138 12 C 0.016 3.984 13 C -0.514 4.514 14 H 0.073 0.927 15 C 0.069 3.931 16 N -0.900 5.900 17 Si 0.883 3.117 18 H -0.278 1.278 19 H -0.297 1.297 20 H -0.263 1.263 21 C -0.114 4.114 22 C 0.117 3.883 23 C 0.040 3.960 24 C -0.170 4.170 25 C 0.199 3.801 26 F -0.118 7.118 27 H 0.160 0.840 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.030 0.970 33 H 0.264 0.736 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.160 0.840 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.385 17.223 0.594 17.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.067 5.067 2 C -0.066 4.066 3 C -0.083 4.083 4 C 0.038 3.962 5 C -0.775 4.775 6 S 2.780 3.220 7 O -0.943 6.943 8 O -0.944 6.944 9 N -0.826 5.826 10 C -0.010 4.010 11 C -0.176 4.176 12 C -0.003 4.003 13 C -0.552 4.552 14 H 0.091 0.909 15 C -0.133 4.133 16 N -0.538 5.538 17 Si 0.713 3.287 18 H -0.205 1.205 19 H -0.225 1.225 20 H -0.188 1.188 21 C -0.153 4.153 22 C -0.008 4.008 23 C 0.020 3.980 24 C -0.190 4.190 25 C 0.176 3.824 26 F -0.096 7.096 27 H 0.177 0.823 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.177 0.823 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.750 17.672 1.121 17.920 hybrid contribution -0.713 -0.400 -0.172 0.836 sum 2.036 17.272 0.949 17.418 Atomic orbital electron populations 1.81266 1.11505 1.07907 1.05992 1.25133 0.92074 0.94447 0.94919 1.15964 0.85439 1.12203 0.94725 1.20855 0.92041 0.86625 0.96699 1.31374 1.05749 1.18196 1.22138 1.02121 0.73599 0.72627 0.73622 1.93579 1.38491 1.75498 1.86692 1.93585 1.67461 1.83093 1.50251 1.57585 1.30779 1.23970 1.70220 1.21772 0.90569 0.92543 0.96157 1.22487 1.00963 0.96394 0.97801 1.19084 0.91484 0.93361 0.96333 1.21032 1.30099 1.05669 0.98418 0.90874 1.25045 0.95840 0.95325 0.97081 1.69889 1.36139 1.12573 1.35198 0.86919 0.79525 0.76215 0.86031 1.20535 1.22493 1.18776 1.21844 1.00435 0.95791 0.97273 1.21687 0.84769 0.97152 0.97181 1.21043 1.01210 0.86338 0.89392 1.21246 0.91338 1.05347 1.01019 1.17884 0.90357 0.93462 0.80665 1.91596 1.80578 1.89753 1.47667 0.82256 0.90829 0.90110 0.91632 0.92400 0.95191 0.92635 0.92251 0.91177 0.89990 0.90821 0.82252 0.82377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -5.79 18.54 41.84 0.78 -5.01 16 2 C 0.25 3.19 14.98 -22.47 -0.34 2.86 16 3 C -0.08 -0.85 5.74 -106.82 -0.61 -1.46 16 4 C 0.06 0.62 9.22 -39.17 -0.36 0.26 16 5 C -0.69 -7.10 5.97 -39.64 -0.24 -7.34 16 6 S 2.69 32.49 5.69 -107.50 -0.61 31.88 16 7 O -0.95 -12.51 15.98 -57.17 -0.91 -13.43 16 8 O -0.95 -13.39 15.98 -57.17 -0.91 -14.30 16 9 N -0.99 -12.90 3.28 -113.27 -0.37 -13.28 16 10 C 0.11 1.66 6.41 -3.49 -0.02 1.64 16 11 C -0.14 -2.52 4.86 -26.39 -0.13 -2.65 16 12 C 0.02 0.33 1.65 -91.73 -0.15 0.18 16 13 C -0.51 -13.14 9.14 -34.44 -0.31 -13.46 16 14 H 0.07 2.04 7.99 -52.49 -0.42 1.62 16 15 C 0.07 1.86 5.45 -17.82 -0.10 1.77 16 16 N -0.90 -26.40 13.96 55.43 0.77 -25.63 16 17 Si 0.88 20.47 24.38 -169.99 -4.14 16.33 16 18 H -0.28 -6.28 6.86 56.52 0.39 -5.89 16 19 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.26 -5.66 6.53 56.52 0.37 -5.29 16 21 C -0.11 -1.82 5.30 -26.61 -0.14 -1.96 16 22 C 0.12 1.48 6.37 -3.71 -0.02 1.46 16 23 C 0.04 0.34 9.51 -39.51 -0.38 -0.04 16 24 C -0.17 -1.33 10.01 -39.57 -0.40 -1.72 16 25 C 0.20 1.94 7.28 -38.95 -0.28 1.66 16 26 F -0.12 -1.24 16.81 2.25 0.04 -1.20 16 27 H 0.16 1.49 7.61 -52.49 -0.40 1.09 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.08 1.03 7.12 -51.93 -0.37 0.66 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.16 3.24 -51.93 -0.17 0.99 16 32 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.08 0.84 7.13 -51.93 -0.37 0.47 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.16 1.00 7.60 -52.49 -0.40 0.60 16 39 H 0.16 0.78 8.06 -52.48 -0.42 0.36 16 LS Contribution 341.97 15.07 5.15 5.15 Total: -1.00 -32.21 341.97 -7.91 -40.13 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -4.22 Total: -1.84 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -3.48 Total: -18.80 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 1.18 Total: -43.92 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -1.83 Total: -27.73 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.14 Total: 16.33 kcal Atomic # 16 Polarization: 32.49 SS G_CDS: -0.61 Total: 31.88 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.21 -7.91 -40.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397338076.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.810 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds