Wall clock time and date at job start Tue Mar 31 2020 21:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39687 * 120.17090 * 283.37235 * 3 2 1 5 5 C 1.37874 * 119.86926 * 179.72580 * 4 3 2 6 6 S 1.76202 * 119.88791 * 180.26035 * 5 4 3 7 7 O 1.42101 * 106.40095 * 203.53764 * 6 5 4 8 8 O 1.42096 * 106.40452 * 336.45905 * 6 5 4 9 9 N 1.65599 * 107.21981 * 90.00025 * 6 5 4 10 10 C 1.46922 * 120.63066 * 269.72018 * 9 6 5 11 11 C 1.53630 * 108.54567 * 126.36907 * 10 9 6 12 12 C 1.53035 * 109.24277 * 54.85356 * 11 10 9 13 13 C 1.50699 * 109.45094 * 178.49810 * 12 11 10 14 14 H 1.07998 * 119.99903 * 120.05807 * 13 12 11 15 15 C 1.37882 * 119.99974 * 300.06752 * 13 12 11 16 16 N 1.31514 * 119.99934 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 119.99964 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.46757 * 90.00181 * 17 15 13 19 19 H 1.48497 * 109.47399 * 210.00148 * 17 15 13 20 20 H 1.48500 * 109.47142 * 330.00553 * 17 15 13 21 21 C 1.53043 * 109.53979 * 298.51328 * 12 11 10 22 22 C 1.46926 * 120.63218 * 89.99483 * 9 6 5 23 23 C 1.38440 * 120.22165 * 0.27996 * 5 4 3 24 24 C 1.38233 * 120.34404 * 0.02562 * 23 5 4 25 25 C 1.38283 * 120.12684 * 359.97438 * 24 23 5 26 26 F 1.35095 * 120.11423 * 179.97438 * 25 24 23 27 27 H 1.08002 * 120.06757 * 0.02562 * 4 3 2 28 28 H 1.08997 * 109.58803 * 246.20025 * 10 9 6 29 29 H 1.09000 * 109.58972 * 6.62333 * 10 9 6 30 30 H 1.08999 * 109.63186 * 294.86608 * 11 10 9 31 31 H 1.08997 * 109.45853 * 174.73989 * 11 10 9 32 32 H 1.09002 * 109.46143 * 58.53094 * 12 11 10 33 33 H 0.96991 * 120.00164 * 180.02562 * 16 15 13 34 34 H 1.08996 * 109.49704 * 301.41435 * 21 12 11 35 35 H 1.09002 * 109.52582 * 181.32993 * 21 12 11 36 36 H 1.09000 * 109.58806 * 353.37928 * 22 9 6 37 37 H 1.09006 * 109.58564 * 113.65390 * 22 9 6 38 38 H 1.08002 * 119.83041 * 180.02562 * 23 5 4 39 39 H 1.08003 * 119.93579 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2702 -0.2783 1.1749 5 6 4.6489 -0.2816 1.1665 6 16 5.5351 -0.6402 2.6467 7 8 6.8191 -0.0498 2.4986 8 8 4.6588 -0.3353 3.7229 9 7 5.7757 -2.2781 2.6893 10 6 4.7948 -3.1623 3.3332 11 6 4.3863 -4.2516 2.3299 12 6 5.6407 -4.9677 1.8243 13 6 5.2426 -6.0619 0.8675 14 1 5.6000 -6.0446 -0.1515 15 6 4.4220 -7.0849 1.2931 16 7 4.0743 -8.0395 0.4580 17 14 3.8043 -7.1150 3.0557 18 1 2.5167 -6.3801 3.1414 19 1 3.6007 -8.5219 3.4850 20 1 4.8042 -6.4668 3.9418 21 6 6.5469 -3.9660 1.1048 22 6 6.9772 -2.8741 2.0893 23 6 5.3393 -0.0037 -0.0008 24 6 4.6535 0.2798 -1.1671 25 6 3.2708 0.2870 -1.1750 26 9 2.6008 0.5646 -2.3148 27 1 2.7342 -0.4958 2.0869 28 1 5.2410 -3.6225 4.2148 29 1 3.9178 -2.5844 3.6246 30 1 3.8629 -3.7970 1.4887 31 1 3.7303 -4.9702 2.8212 32 1 6.1768 -5.4009 2.6687 33 1 3.4967 -8.7590 0.7572 34 1 6.0032 -3.5142 0.2752 35 1 7.4291 -4.4809 0.7242 36 1 7.5406 -2.1059 1.5597 37 1 7.5991 -3.3090 2.8718 38 1 6.4193 -0.0084 -0.0003 39 1 5.1988 0.4961 -2.0739 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397338076.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:02 Heat of formation + Delta-G solvation = -76.599313 kcal Electronic energy + Delta-G solvation = -27427.244833 eV Core-core repulsion = 23375.898834 eV Total energy + Delta-G solvation = -4051.345999 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.089 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.40932 -40.44851 -39.44002 -38.42693 -37.78341 -36.97416 -35.22628 -33.05745 -32.85344 -32.22316 -31.90356 -27.72954 -25.54834 -24.58924 -24.28679 -23.73731 -21.51406 -20.82943 -19.63514 -18.92787 -18.74218 -18.40106 -18.14232 -17.76497 -17.12307 -16.70558 -16.60408 -15.49843 -15.42773 -15.28791 -15.09831 -15.02466 -14.84503 -14.77227 -14.52189 -14.49845 -14.33794 -14.08492 -13.99315 -13.60770 -13.59447 -13.23271 -13.07153 -12.77457 -12.70792 -12.64435 -12.20107 -12.15842 -12.01324 -11.66204 -11.39615 -11.03605 -10.89639 -10.59706 -10.43871 -10.42627 -9.85367 -8.23699 -6.26006 -0.88551 -0.65256 -0.36401 1.28669 1.34249 1.40602 1.42867 1.50137 1.89525 2.29549 2.37518 2.42101 2.66917 2.72983 3.13258 3.17706 3.40748 3.76901 3.78029 3.94073 4.13436 4.24255 4.31786 4.42009 4.50488 4.52998 4.56925 4.68366 4.73407 4.74252 4.77498 4.88066 5.04483 5.11525 5.25359 5.37071 5.48325 5.54445 5.73354 5.76830 5.88057 6.11859 6.39558 6.83357 7.39884 8.93014 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.010485 B = 0.004804 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.965223 B = 5827.143678 C = 6942.424161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C 0.268 3.732 3 C -0.094 4.094 4 C 0.055 3.945 5 C -0.695 4.695 6 S 2.711 3.289 7 O -0.959 6.959 8 O -0.974 6.974 9 N -0.988 5.988 10 C 0.118 3.882 11 C -0.137 4.137 12 C 0.011 3.989 13 C -0.508 4.508 14 H 0.034 0.966 15 C 0.006 3.994 16 N -0.956 5.956 17 Si 0.940 3.060 18 H -0.269 1.269 19 H -0.310 1.310 20 H -0.233 1.233 21 C -0.110 4.110 22 C 0.120 3.880 23 C 0.046 3.954 24 C -0.157 4.157 25 C 0.194 3.806 26 F -0.124 7.124 27 H 0.166 0.834 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.029 0.971 33 H 0.261 0.739 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.114 0.886 37 H 0.084 0.916 38 H 0.188 0.812 39 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.161 19.536 1.657 20.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.113 5.113 2 C -0.047 4.047 3 C -0.099 4.099 4 C 0.034 3.966 5 C -0.781 4.781 6 S 2.801 3.199 7 O -0.950 6.950 8 O -0.964 6.964 9 N -0.827 5.827 10 C -0.007 4.007 11 C -0.176 4.176 12 C -0.008 4.008 13 C -0.546 4.546 14 H 0.052 0.948 15 C -0.190 4.190 16 N -0.597 5.597 17 Si 0.768 3.232 18 H -0.195 1.195 19 H -0.238 1.238 20 H -0.156 1.156 21 C -0.149 4.149 22 C -0.005 4.005 23 C 0.026 3.974 24 C -0.176 4.176 25 C 0.172 3.828 26 F -0.102 7.102 27 H 0.183 0.817 28 H 0.102 0.898 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.132 0.868 37 H 0.103 0.897 38 H 0.205 0.795 39 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 4.559 20.016 2.213 20.647 hybrid contribution -1.173 -1.087 -0.658 1.729 sum 3.386 18.928 1.555 19.292 Atomic orbital electron populations 1.81269 1.12793 1.09753 1.07435 1.25474 0.92478 0.93145 0.93637 1.16031 0.84342 1.13886 0.95643 1.20945 0.92363 0.86525 0.96789 1.31153 1.05424 1.19401 1.22167 1.01460 0.73115 0.71866 0.73472 1.93570 1.39039 1.75394 1.86951 1.93562 1.67898 1.83204 1.51766 1.57583 1.30629 1.24154 1.70318 1.21686 0.91874 0.91955 0.95190 1.22356 0.99397 0.97156 0.98729 1.19107 0.93320 0.93055 0.95358 1.21465 1.28416 1.06966 0.97801 0.94792 1.25909 0.96595 0.95143 1.01344 1.70064 1.38112 1.13931 1.37609 0.85975 0.80072 0.75678 0.81479 1.19546 1.23840 1.15585 1.21752 0.99480 0.95882 0.97830 1.21726 0.84838 0.96997 0.96904 1.21470 1.02629 0.84661 0.88634 1.21607 0.90300 1.03537 1.02140 1.18114 0.91210 0.93447 0.80054 1.91586 1.80905 1.89824 1.47917 0.81684 0.89823 0.88146 0.91877 0.94094 0.95278 0.93028 0.92177 0.91314 0.86809 0.89740 0.79454 0.78996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -13.07 18.54 19.00 0.35 -12.72 16 2 C 0.27 6.77 14.98 88.33 1.32 8.10 16 3 C -0.09 -1.90 5.74 -21.29 -0.12 -2.02 16 4 C 0.06 1.05 9.22 22.53 0.21 1.25 16 5 C -0.70 -12.07 5.97 22.23 0.13 -11.94 16 6 S 2.71 55.84 5.69 -56.49 -0.32 55.52 16 7 O -0.96 -21.20 15.98 -128.00 -2.05 -23.25 16 8 O -0.97 -24.51 15.98 -128.00 -2.04 -26.55 16 9 N -0.99 -22.24 3.28 -512.28 -1.68 -23.93 16 10 C 0.12 3.05 6.41 86.51 0.55 3.60 16 11 C -0.14 -4.75 4.86 30.82 0.15 -4.60 16 12 C 0.01 0.41 1.65 -11.51 -0.02 0.39 16 13 C -0.51 -26.42 9.14 25.60 0.23 -26.18 16 14 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 15 C 0.01 0.34 5.45 84.66 0.46 0.80 16 16 N -0.96 -58.31 13.96 21.45 0.30 -58.01 16 17 Si 0.94 42.28 24.38 68.60 1.67 43.95 16 18 H -0.27 -11.58 6.86 99.48 0.68 -10.90 16 19 H -0.31 -14.44 7.11 99.48 0.71 -13.73 16 20 H -0.23 -9.20 6.53 99.48 0.65 -8.55 16 21 C -0.11 -3.26 5.30 30.67 0.16 -3.09 16 22 C 0.12 2.57 6.37 86.36 0.55 3.12 16 23 C 0.05 0.58 9.51 22.32 0.21 0.79 16 24 C -0.16 -1.85 10.01 22.28 0.22 -1.62 16 25 C 0.19 3.37 7.28 22.68 0.17 3.54 16 26 F -0.12 -2.42 16.81 44.97 0.76 -1.66 16 27 H 0.17 2.81 7.61 -2.91 -0.02 2.79 16 28 H 0.08 2.02 8.14 -2.39 -0.02 2.01 16 29 H 0.10 2.22 7.12 -2.39 -0.02 2.21 16 30 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.04 1.56 3.24 -2.39 -0.01 1.55 16 32 H 0.03 1.15 7.20 -2.39 -0.02 1.13 16 33 H 0.26 15.13 8.31 -92.72 -0.77 14.36 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.11 1.77 7.13 -2.39 -0.02 1.75 16 37 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.19 1.33 7.60 -2.91 -0.02 1.31 16 39 H 0.19 0.95 8.06 -2.91 -0.02 0.93 16 Total: -1.00 -72.43 341.97 2.24 -70.19 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: 1.02 Total: 4.35 kcal Atomic # 6 Polarization: -32.11 SS G_CDS: 4.24 Total: -27.87 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -1.03 Total: -94.66 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -4.09 Total: -49.80 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.76 Total: -1.66 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.67 Total: 43.95 kcal Atomic # 16 Polarization: 55.84 SS G_CDS: -0.32 Total: 55.52 kcal Total: -72.43 2.24 -70.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397338076.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.413 kcal (2) G-P(sol) polarization free energy of solvation -72.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds