Wall clock time and date at job start Tue Mar 31 2020 21:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39906 * 120.16750 * 195.43641 * 3 2 1 5 5 F 1.35104 * 120.10688 * 359.97438 * 4 3 2 6 6 C 1.38237 * 119.77856 * 180.02562 * 4 3 2 7 7 C 1.38268 * 120.12406 * 359.72644 * 6 4 3 8 8 C 1.38401 * 120.34821 * 0.55100 * 7 6 4 9 9 C 1.37915 * 120.21496 * 359.44563 * 8 7 6 10 10 S 1.76198 * 120.06530 * 180.25341 * 9 8 7 11 11 O 1.42098 * 106.40438 * 228.54407 * 10 9 8 12 12 O 1.42104 * 106.40137 * 1.46484 * 10 9 8 13 13 N 1.65596 * 107.21968 * 115.00115 * 10 9 8 14 14 C 1.46925 * 120.63307 * 269.72458 * 13 10 9 15 15 C 1.52761 * 109.00901 * 233.58244 * 14 13 10 16 16 C 1.53043 * 109.38436 * 305.58793 * 15 14 13 17 17 C 1.53039 * 109.54087 * 61.23618 * 16 15 14 18 18 H 1.09000 * 109.52139 * 58.60130 * 17 16 15 19 19 C 1.50690 * 109.50000 * 178.68695 * 17 16 15 20 20 H 1.07997 * 120.00486 * 119.83936 * 19 17 16 21 21 C 1.37880 * 120.00210 * 299.83717 * 19 17 16 22 22 N 1.31513 * 119.99705 * 0.02562 * 21 19 17 23 23 Si 1.86793 * 120.00150 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47521 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47156 * 120.00476 * 23 21 19 26 26 H 1.48501 * 109.47160 * 240.00085 * 23 21 19 27 27 C 1.46924 * 120.63129 * 90.00027 * 13 10 9 28 28 H 1.07999 * 119.93529 * 179.97438 * 6 4 3 29 29 H 1.08008 * 119.82972 * 180.27894 * 7 6 4 30 30 H 1.08002 * 119.89643 * 179.72781 * 8 7 6 31 31 H 1.08999 * 109.58659 * 353.41587 * 14 13 10 32 32 H 1.09001 * 109.58977 * 113.84408 * 14 13 10 33 33 H 1.08996 * 109.56926 * 185.55201 * 15 14 13 34 34 H 1.09008 * 109.36264 * 65.49546 * 15 14 13 35 35 H 1.08999 * 109.45744 * 301.21804 * 16 15 14 36 36 H 1.09003 * 109.46170 * 181.26129 * 16 15 14 37 37 H 0.97001 * 120.00363 * 179.97438 * 22 21 19 38 38 H 1.09000 * 109.58758 * 246.15960 * 27 13 10 39 39 H 1.08999 * 109.58588 * 6.58397 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2706 1.1669 0.3220 5 9 2.6002 2.2977 0.6337 6 6 4.6529 1.1586 0.3189 7 6 5.3393 0.0002 0.0044 8 6 4.6496 -1.1549 -0.3205 9 6 3.2704 -1.1626 -0.3218 10 16 2.3964 -2.6372 -0.7295 11 8 1.4132 -2.2692 -1.6871 12 8 3.3806 -3.6336 -0.9697 13 7 1.5735 -3.1104 0.6274 14 6 2.1945 -4.0192 1.6007 15 6 1.2660 -5.2100 1.8322 16 6 -0.1189 -4.7024 2.2403 17 6 -0.7020 -3.8448 1.1149 18 1 -0.7651 -4.4363 0.2015 19 6 -2.0788 -3.3721 1.5044 20 1 -2.2865 -2.3147 1.5762 21 6 -3.0734 -4.2895 1.7691 22 7 -2.8204 -5.5771 1.6821 23 14 -4.7803 -3.7035 2.2511 24 1 -4.8049 -2.2190 2.2778 25 1 -5.7712 -4.1979 1.2617 26 1 -5.1217 -4.2279 3.5979 27 6 0.2064 -2.6341 0.8781 28 1 5.1978 2.0576 0.5667 29 1 6.4193 -0.0021 0.0079 30 1 5.1930 -2.0544 -0.5693 31 1 3.1498 -4.3726 1.2128 32 1 2.3520 -3.4938 2.5426 33 1 1.6706 -5.8398 2.6244 34 1 1.1846 -5.7891 0.9122 35 1 -0.0334 -4.1029 3.1466 36 1 -0.7763 -5.5515 2.4276 37 1 -3.5200 -6.2226 1.8687 38 1 0.1986 -1.9934 1.7598 39 1 -0.1496 -2.0738 0.0135 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397786268.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:47 Heat of formation + Delta-G solvation = -71.444267 kcal Electronic energy + Delta-G solvation = -27807.659188 eV Core-core repulsion = 23756.536729 eV Total energy + Delta-G solvation = -4051.122459 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.089 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.24611 -40.45349 -39.47950 -38.71631 -37.69683 -37.13471 -35.29188 -32.99088 -32.78485 -32.04402 -31.93110 -27.11881 -25.65723 -25.34525 -24.43026 -23.41652 -21.29953 -20.98339 -19.88077 -19.09211 -18.75969 -18.27440 -17.91713 -17.16248 -17.05265 -16.89666 -16.58157 -16.20901 -15.57382 -15.34149 -15.19419 -15.00638 -14.83926 -14.58692 -14.53227 -14.41030 -14.15885 -13.77780 -13.57759 -13.50216 -13.41249 -13.34879 -13.05372 -12.97314 -12.84970 -12.73202 -12.56555 -12.03838 -11.88198 -11.86666 -11.63539 -11.12368 -10.82933 -10.66661 -10.46895 -10.10532 -9.90640 -8.13417 -6.27808 -1.01919 -0.79219 -0.32775 1.21108 1.34783 1.36964 1.48943 1.61433 1.69257 2.27583 2.37584 2.39178 2.54676 2.74175 3.12759 3.16474 3.61423 3.72376 3.76307 4.02658 4.15467 4.25001 4.29208 4.43368 4.48645 4.58934 4.68941 4.70474 4.80533 4.87923 4.92778 5.01180 5.01908 5.22775 5.30694 5.43913 5.52075 5.59671 5.66970 5.91541 6.06559 6.12301 6.32970 6.81839 7.39587 8.90855 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.015440 B = 0.004349 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.022621 B = 6436.357786 C = 7515.325095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C 0.212 3.788 3 C 0.013 3.987 4 C 0.123 3.877 5 F -0.132 7.132 6 C -0.080 4.080 7 C -0.053 4.053 8 C -0.025 4.025 9 C -0.618 4.618 10 S 2.679 3.321 11 O -0.989 6.989 12 O -0.954 6.954 13 N -0.996 5.996 14 C 0.118 3.882 15 C -0.128 4.128 16 C -0.103 4.103 17 C 0.038 3.962 18 H -0.012 1.012 19 C -0.535 4.535 20 H 0.046 0.954 21 C 0.019 3.981 22 N -0.911 5.911 23 Si 0.952 3.048 24 H -0.274 1.274 25 H -0.281 1.281 26 H -0.272 1.272 27 C 0.136 3.864 28 H 0.199 0.801 29 H 0.209 0.791 30 H 0.183 0.817 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.042 0.958 35 H 0.038 0.962 36 H 0.063 0.937 37 H 0.262 0.738 38 H 0.056 0.944 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.341 11.448 0.495 27.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.066 5.066 2 C -0.103 4.103 3 C 0.008 3.992 4 C 0.100 3.900 5 F -0.110 7.110 6 C -0.098 4.098 7 C -0.072 4.072 8 C -0.044 4.044 9 C -0.709 4.709 10 S 2.773 3.227 11 O -0.979 6.979 12 O -0.945 6.945 13 N -0.835 5.835 14 C -0.006 4.006 15 C -0.167 4.167 16 C -0.142 4.142 17 C 0.018 3.982 18 H 0.007 0.993 19 C -0.574 4.574 20 H 0.064 0.936 21 C -0.181 4.181 22 N -0.550 5.550 23 Si 0.778 3.222 24 H -0.199 1.199 25 H -0.207 1.207 26 H -0.197 1.197 27 C 0.011 3.989 28 H 0.216 0.784 29 H 0.226 0.774 30 H 0.200 0.800 31 H 0.132 0.868 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 23.466 10.903 -0.279 25.876 hybrid contribution -1.648 0.760 0.428 1.865 sum 21.817 11.663 0.149 24.739 Atomic orbital electron populations 1.81319 1.12963 1.04807 1.07485 1.26064 0.93454 0.96122 0.94664 1.15496 0.82996 0.95211 1.05510 1.17977 0.91754 0.80223 1.00077 1.91567 1.81149 1.48282 1.90033 1.21999 0.89200 1.02754 0.95883 1.22064 1.03693 0.89153 0.92326 1.21558 0.89247 1.02200 0.91408 1.30819 1.08052 1.15897 1.16131 1.02071 0.73126 0.74480 0.73054 1.93588 1.60386 1.84775 1.59188 1.93537 1.60662 1.56359 1.83898 1.57579 1.24217 1.59707 1.42002 1.21673 0.96249 0.89865 0.92773 1.21832 0.96019 0.97483 1.01377 1.21391 0.95068 1.00345 0.97350 1.18894 0.92623 0.92209 0.94493 0.99344 1.21417 0.96344 0.92673 1.46959 0.93572 1.25651 1.02139 0.95009 0.95262 1.70011 1.34079 1.01151 1.49799 0.85599 0.80095 0.78373 0.78158 1.19871 1.20650 1.19691 1.21687 0.79579 0.97573 1.00074 0.78371 0.77413 0.80016 0.86760 0.89087 0.88847 0.93922 0.94283 0.91868 0.92850 0.92537 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -16.52 15.95 19.00 0.30 -16.22 16 2 C 0.21 7.55 11.13 88.33 0.98 8.53 16 3 C 0.01 0.34 5.74 -21.29 -0.12 0.22 16 4 C 0.12 2.20 7.28 22.67 0.17 2.37 16 5 F -0.13 -2.79 16.81 44.97 0.76 -2.04 16 6 C -0.08 -0.55 10.01 22.28 0.22 -0.33 16 7 C -0.05 -0.22 10.03 22.32 0.22 0.00 16 8 C -0.02 -0.30 9.54 22.23 0.21 -0.09 16 9 C -0.62 -14.26 5.94 22.53 0.13 -14.12 16 10 S 2.68 88.86 5.19 -56.49 -0.29 88.57 16 11 O -0.99 -42.18 15.37 -128.00 -1.97 -44.14 16 12 O -0.95 -30.10 15.55 -128.00 -1.99 -32.09 16 13 N -1.00 -36.23 3.28 -513.85 -1.69 -37.92 16 14 C 0.12 3.50 6.45 86.22 0.56 4.06 16 15 C -0.13 -4.64 6.06 30.53 0.19 -4.45 16 16 C -0.10 -4.88 4.96 30.62 0.15 -4.73 16 17 C 0.04 2.04 2.25 -11.46 -0.03 2.01 16 18 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 19 C -0.54 -31.56 8.56 25.60 0.22 -31.34 16 20 H 0.05 2.76 7.74 -2.91 -0.02 2.73 16 21 C 0.02 1.08 5.30 84.66 0.45 1.53 16 22 N -0.91 -54.15 11.32 21.45 0.24 -53.90 16 23 Si 0.95 46.04 29.54 68.60 2.03 48.07 16 24 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 26 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 27 C 0.14 6.19 3.67 86.36 0.32 6.51 16 28 H 0.20 -0.27 8.06 -2.91 -0.02 -0.29 16 29 H 0.21 -1.26 8.06 -2.91 -0.02 -1.28 16 30 H 0.18 1.50 7.33 -2.91 -0.02 1.48 16 31 H 0.11 2.67 6.91 -2.39 -0.02 2.66 16 32 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.75 16 36 H 0.06 3.39 6.05 -2.39 -0.01 3.38 16 37 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 38 H 0.06 2.51 8.07 -2.39 -0.02 2.49 16 39 H 0.07 3.33 4.41 -2.39 -0.01 3.32 16 Total: -1.00 -82.58 336.91 2.16 -80.42 By element: Atomic # 1 Polarization: -2.01 SS G_CDS: 1.10 Total: -0.91 kcal Atomic # 6 Polarization: -33.51 SS G_CDS: 3.67 Total: -29.84 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -1.14 Total: -108.04 kcal Atomic # 8 Polarization: -72.28 SS G_CDS: -3.96 Total: -76.23 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.76 Total: -2.04 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Atomic # 16 Polarization: 88.86 SS G_CDS: -0.29 Total: 88.57 kcal Total: -82.58 2.16 -80.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397786268.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.978 kcal (2) G-P(sol) polarization free energy of solvation -82.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds