Wall clock time and date at job start Tue Mar 31 2020 21:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 N 1.46499 * 109.46698 * 180.02562 * 15 13 12 17 17 C 1.35091 * 120.50255 * 269.71668 * 16 15 13 18 18 O 1.21294 * 120.13234 * 1.66541 * 17 16 15 19 19 C 1.50743 * 119.74237 * 181.46838 * 17 16 15 20 20 O 1.42995 * 109.72522 * 329.09723 * 19 17 16 21 21 C 1.36001 * 116.71196 * 46.22982 * 20 19 17 22 22 C 1.38391 * 120.64723 * 147.10514 * 21 20 19 23 23 C 1.38314 * 119.88774 * 180.14135 * 22 21 20 24 24 C 1.38370 * 120.24712 * 359.97438 * 23 22 21 25 25 Cl 1.73600 * 119.91422 * 180.02562 * 24 23 22 26 26 C 1.38396 * 120.17471 * 359.97438 * 24 23 22 27 27 C 1.38494 * 119.80495 * 0.02562 * 26 24 23 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 33 33 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 34 34 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 35 35 H 1.08998 * 109.54080 * 208.92571 * 19 17 16 36 36 H 1.09005 * 109.22248 * 89.07116 * 19 17 16 37 37 H 1.07992 * 120.05176 * 0.17023 * 22 21 20 38 38 H 1.08002 * 119.87356 * 179.97438 * 23 22 21 39 39 H 1.08002 * 120.09622 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 7 2.6984 0.2129 4.7091 17 6 3.8161 0.9313 4.9535 18 8 4.7803 0.8238 4.2255 19 6 3.8587 1.8704 6.1319 20 8 2.5493 2.3857 6.3860 21 6 1.5289 1.4866 6.3914 22 6 0.4383 1.6622 7.2251 23 6 -0.5893 0.7364 7.2199 24 6 -0.5313 -0.3646 6.3839 25 17 -1.8263 -1.5208 6.3839 26 6 0.5558 -0.5460 5.5468 27 6 1.5874 0.3780 5.5482 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.7088 1.1611 -3.4845 32 1 2.2490 -1.6316 1.1527 33 1 1.9776 -1.5506 3.8326 34 1 3.6492 -1.1202 3.3980 35 1 4.5379 2.6952 5.9163 36 1 4.2124 1.3291 7.0095 37 1 0.3896 2.5209 7.8781 38 1 -1.4401 0.8735 7.8709 39 1 0.5999 -1.4061 4.8951 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747323521.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:49 Heat of formation + Delta-G solvation = -71.904490 kcal Electronic energy + Delta-G solvation = -26993.273006 eV Core-core repulsion = 22927.714094 eV Total energy + Delta-G solvation = -4065.558912 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.087 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.81610 -39.32893 -38.76867 -37.88497 -36.62831 -35.67293 -34.72593 -32.45845 -30.95731 -30.30290 -30.01859 -28.61107 -26.51510 -25.26832 -23.83486 -23.03363 -21.28718 -19.89133 -19.50688 -19.39169 -17.78526 -17.53205 -16.92901 -16.34416 -15.96179 -15.55753 -15.47047 -15.07985 -14.99523 -14.67630 -14.54013 -14.12875 -13.91119 -13.70930 -13.31585 -12.97234 -12.89816 -12.45245 -12.37237 -12.05922 -11.78275 -11.64161 -11.29348 -11.17691 -11.10181 -10.98345 -10.77407 -10.71519 -10.33838 -10.25784 -10.12525 -9.26991 -9.08546 -8.87169 -8.57465 -8.03936 -7.98833 -6.13829 -4.23473 0.69561 0.83111 1.82327 2.09242 2.23754 3.03734 3.20061 3.24132 3.26309 3.30688 3.32409 3.74626 4.00719 4.28623 4.35851 4.60028 4.68559 4.75315 4.78237 4.96704 5.05817 5.18428 5.22115 5.25463 5.38696 5.44005 5.66408 5.86597 6.00457 6.16074 6.59021 6.78958 6.92311 7.03553 7.11443 7.39031 7.48352 7.56362 7.66262 7.88128 8.12050 8.57094 8.73852 9.02044 9.43769 10.92188 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.012928 B = 0.003359 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.243231 B = 8333.646818 C = 9748.131424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.266 3.734 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.285 1.285 12 N -0.704 5.704 13 C 0.486 3.514 14 O -0.540 6.540 15 C 0.082 3.918 16 N -0.530 5.530 17 C 0.492 3.508 18 O -0.498 6.498 19 C 0.056 3.944 20 O -0.297 6.297 21 C 0.086 3.914 22 C -0.096 4.096 23 C -0.106 4.106 24 C -0.024 4.024 25 Cl -0.061 7.061 26 C -0.119 4.119 27 C 0.128 3.872 28 H 0.091 0.909 29 H 0.027 0.973 30 H 0.013 0.987 31 H 0.265 0.735 32 H 0.389 0.611 33 H 0.111 0.889 34 H 0.120 0.880 35 H 0.148 0.852 36 H 0.100 0.900 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.728 -3.500 23.282 23.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.210 1.210 12 N -0.353 5.353 13 C 0.269 3.731 14 O -0.417 6.417 15 C -0.043 4.043 16 N -0.254 5.254 17 C 0.280 3.720 18 O -0.371 6.371 19 C -0.022 4.022 20 O -0.211 6.211 21 C 0.039 3.961 22 C -0.115 4.115 23 C -0.125 4.125 24 C -0.052 4.052 25 Cl -0.033 7.033 26 C -0.140 4.140 27 C 0.032 3.968 28 H 0.109 0.891 29 H 0.046 0.954 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.222 0.778 33 H 0.129 0.871 34 H 0.138 0.862 35 H 0.165 0.835 36 H 0.118 0.882 37 H 0.166 0.834 38 H 0.162 0.838 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.520 -2.481 22.702 22.843 hybrid contribution 0.327 -1.245 -1.205 1.763 sum -0.193 -3.726 21.497 21.819 Atomic orbital electron populations 1.22065 0.98305 0.99118 1.00922 1.18766 0.91063 0.93978 0.79777 0.93440 1.21201 1.32542 1.13305 0.90262 0.92014 1.24893 0.94750 0.94958 0.99086 1.69905 1.35749 1.22456 1.23928 0.86431 0.78628 0.79819 0.82119 1.20535 1.19811 1.21038 1.46479 1.64944 1.13562 1.10282 1.20551 0.79504 0.88077 0.84993 1.90696 1.50559 1.15694 1.84782 1.21699 1.05431 0.91800 0.85354 1.45151 1.11592 1.41333 1.27311 1.21489 0.82319 0.80664 0.87478 1.90803 1.34615 1.64060 1.47579 1.23213 0.84302 0.99106 0.95565 1.86241 1.14116 1.32647 1.88082 1.18643 0.91400 0.88999 0.97060 1.20417 0.92392 1.00542 0.98128 1.20833 0.99401 0.92761 0.99534 1.20529 0.91079 0.93624 0.99953 1.98384 1.48316 1.58674 1.97876 1.20468 0.92593 0.99873 1.01078 1.17841 0.89831 0.95763 0.93342 0.89088 0.95404 0.96743 0.92536 0.77834 0.87102 0.86193 0.83479 0.88249 0.83351 0.83847 0.83900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.30 16 2 C 0.27 6.84 2.56 -69.09 -0.18 6.67 16 3 H 0.05 1.43 7.58 -51.92 -0.39 1.04 16 4 C -0.53 -14.27 8.73 -34.44 -0.30 -14.57 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -25.14 11.32 55.43 0.63 -24.51 16 8 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.70 -14.60 5.07 -54.93 -0.28 -14.88 16 13 C 0.49 9.79 7.86 -10.98 -0.09 9.70 16 14 O -0.54 -13.34 16.09 5.56 0.09 -13.25 16 15 C 0.08 1.19 5.69 -5.19 -0.03 1.16 16 16 N -0.53 -7.75 2.21 -114.50 -0.25 -8.00 16 17 C 0.49 7.26 7.67 -10.82 -0.08 7.18 16 18 O -0.50 -8.87 16.77 5.55 0.09 -8.78 16 19 C 0.06 0.58 7.16 36.03 0.26 0.84 16 20 O -0.30 -3.57 10.45 -19.74 -0.21 -3.78 16 21 C 0.09 1.04 6.44 -39.09 -0.25 0.78 16 22 C -0.10 -0.90 10.00 -39.50 -0.39 -1.29 16 23 C -0.11 -0.95 9.82 -39.51 -0.39 -1.33 16 24 C -0.02 -0.26 6.32 -39.47 -0.25 -0.51 16 25 Cl -0.06 -0.61 28.95 -51.86 -1.50 -2.11 16 26 C -0.12 -1.40 9.14 -39.43 -0.36 -1.76 16 27 C 0.13 1.68 6.39 -83.50 -0.53 1.15 16 28 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.39 6.76 8.54 -40.82 -0.35 6.41 16 33 H 0.11 1.19 5.96 -51.93 -0.31 0.88 16 34 H 0.12 1.60 7.49 -51.93 -0.39 1.21 16 35 H 0.15 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.14 1.53 6.12 -52.49 -0.32 1.21 16 LS Contribution 350.53 15.07 5.28 5.28 Total: -1.00 -34.86 350.53 -7.67 -42.53 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -4.15 Total: 5.31 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -2.35 Total: 6.43 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 0.10 Total: -47.39 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.02 Total: -25.81 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.86 -7.67 -42.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747323521.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.379 kcal (2) G-P(sol) polarization free energy of solvation -34.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds