Wall clock time and date at job start Tue Mar 31 2020 21:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99941 * 2 1 4 4 H 1.48503 * 109.46787 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47084 * 299.99166 * 3 2 1 6 6 H 1.48492 * 109.47330 * 59.99937 * 3 2 1 7 7 C 1.38796 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00243 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00249 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47070 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00378 * 0.02562 * 11 10 9 13 13 N 1.34782 * 120.00013 * 180.02562 * 11 10 9 14 14 C 1.47156 * 120.97902 * 359.97438 * 13 11 10 15 15 C 1.53298 * 108.38111 * 129.48742 * 14 13 11 16 16 O 1.42955 * 109.22369 * 52.30392 * 15 14 13 17 17 C 1.42963 * 114.16797 * 297.41803 * 16 15 14 18 18 H 1.09004 * 109.51151 * 302.65542 * 17 16 15 19 19 C 1.53002 * 109.51571 * 182.50443 * 17 16 15 20 20 N 1.46500 * 109.47028 * 65.25427 * 19 17 16 21 21 C 1.34776 * 119.99926 * 180.02562 * 20 19 17 22 22 O 1.21279 * 119.99960 * 359.97438 * 21 20 19 23 23 C 1.50701 * 119.99921 * 179.97438 * 21 20 19 24 24 F 1.39898 * 109.47237 * 54.99765 * 23 21 20 25 25 F 1.39902 * 109.46838 * 175.00216 * 23 21 20 26 26 C 1.47148 * 120.98531 * 180.02562 * 13 11 10 27 27 H 0.96999 * 120.00039 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46871 * 60.00298 * 10 9 7 29 29 H 1.08993 * 109.47447 * 299.99979 * 10 9 7 30 30 H 1.09001 * 109.68077 * 249.21180 * 14 13 11 31 31 H 1.08998 * 109.68021 * 9.76908 * 14 13 11 32 32 H 1.09001 * 109.50808 * 172.22325 * 15 14 13 33 33 H 1.08995 * 109.51365 * 292.37497 * 15 14 13 34 34 H 1.08998 * 109.47116 * 185.25220 * 19 17 16 35 35 H 1.09002 * 109.47070 * 305.25261 * 19 17 16 36 36 H 0.97003 * 120.00083 * 359.97438 * 20 19 17 37 37 H 1.09004 * 109.46917 * 294.99907 * 23 21 20 38 38 H 1.09005 * 109.67946 * 350.23008 * 26 13 11 39 39 H 1.08994 * 109.68347 * 110.75288 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2020 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3432 0.0018 14 6 4.2995 -6.1259 0.0013 15 6 4.9144 -6.9686 1.1246 16 8 4.4745 -8.3224 0.9921 17 6 3.0616 -8.4944 1.1256 18 1 2.7372 -8.1068 2.0914 19 6 2.7164 -9.9819 1.0287 20 7 3.2972 -10.6933 2.1702 21 6 3.1218 -12.0237 2.2950 22 8 2.4829 -12.6319 1.4627 23 6 3.7198 -12.7556 3.4689 24 9 3.2886 -12.1596 4.6588 25 9 3.3103 -14.0931 3.4421 26 6 2.3517 -7.7299 0.0019 27 1 -0.4850 0.8400 -0.0004 28 1 3.1243 -3.7314 0.8906 29 1 3.1244 -3.7315 -0.8894 30 1 4.7161 -6.4328 -0.9580 31 1 4.5132 -5.0713 0.1746 32 1 6.0015 -6.9306 1.0548 33 1 4.5968 -6.5755 2.0903 34 1 1.6334 -10.1048 1.0369 35 1 3.1214 -10.3892 0.1024 36 1 3.8085 -10.2069 2.8357 37 1 4.8072 -12.7073 3.4115 38 1 1.2756 -7.7374 0.1755 39 1 2.5720 -8.1977 -0.9576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001064881127.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:25 Heat of formation + Delta-G solvation = -207.505479 kcal Electronic energy + Delta-G solvation = -26397.861536 eV Core-core repulsion = 21910.069795 eV Total energy + Delta-G solvation = -4487.791741 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.64779 -47.67402 -40.62693 -39.90969 -38.38341 -35.67114 -34.73944 -32.56986 -32.49918 -29.80680 -29.36266 -27.87777 -25.76231 -25.31151 -23.67380 -21.90024 -21.53199 -19.44233 -19.01193 -18.30784 -18.00690 -17.82903 -17.17878 -16.92122 -16.54848 -15.88733 -15.67372 -15.54466 -15.27132 -15.01509 -14.87023 -14.61344 -14.46104 -14.03539 -14.00025 -13.74744 -13.67936 -13.30206 -13.20143 -12.83237 -12.63707 -12.55752 -12.14146 -11.98177 -11.70878 -11.12844 -11.10029 -11.09363 -10.82186 -10.55869 -10.46317 -9.87797 -9.78551 -9.54909 -9.14413 -8.68595 -8.31857 -6.59107 -6.28780 -4.00403 1.63531 2.01551 2.67536 2.86356 3.13220 3.16511 3.19271 3.25536 3.30358 3.45161 3.56912 4.02694 4.12551 4.17209 4.25824 4.39718 4.53813 4.62023 4.76660 4.82815 5.01028 5.06703 5.07344 5.19140 5.30326 5.35568 5.46602 5.56081 5.63167 5.66479 5.73849 5.97957 6.30633 6.62666 6.64639 7.30185 7.31979 7.52651 8.27914 8.35395 9.16644 10.78658 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.028516 B = 0.001923 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.672878 B =14558.623316 C =14698.757577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.151 4.151 11 C 0.537 3.463 12 O -0.511 6.511 13 N -0.624 5.624 14 C 0.073 3.927 15 C 0.049 3.951 16 O -0.377 6.377 17 C 0.065 3.935 18 H 0.075 0.925 19 C 0.129 3.871 20 N -0.706 5.706 21 C 0.472 3.528 22 O -0.501 6.501 23 C 0.259 3.741 24 F -0.188 7.188 25 F -0.176 7.176 26 C 0.089 3.911 27 H 0.269 0.731 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.411 0.589 37 H 0.139 0.861 38 H 0.106 0.894 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.201 -21.535 5.622 26.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.167 5.833 10 C -0.301 4.301 11 C 0.325 3.675 12 O -0.384 6.384 13 N -0.362 5.362 14 C -0.051 4.051 15 C -0.028 4.028 16 O -0.296 6.296 17 C 0.006 3.994 18 H 0.093 0.907 19 C 0.006 3.994 20 N -0.358 5.358 21 C 0.253 3.747 22 O -0.375 6.375 23 C 0.202 3.798 24 F -0.169 7.169 25 F -0.157 7.157 26 C -0.035 4.035 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.119 0.881 32 H 0.127 0.873 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.246 0.754 37 H 0.156 0.844 38 H 0.124 0.876 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 11.862 -22.309 4.987 25.754 hybrid contribution 2.119 1.771 0.432 2.795 sum 13.981 -20.539 5.419 25.430 Atomic orbital electron populations 1.70020 1.05967 1.27458 1.46708 1.25003 0.95047 0.99095 0.94463 0.86102 0.79541 0.81806 0.77962 1.19608 1.20522 1.20530 1.22881 0.94896 0.91518 1.59129 0.90849 1.85452 1.04723 0.96414 1.96709 1.23550 1.06710 0.95089 1.04773 1.20406 0.86140 0.86125 0.74793 1.90709 1.15072 1.85082 1.47574 1.48126 1.06387 1.05409 1.76266 1.22433 0.80444 1.02216 1.00009 1.23030 1.00065 0.81849 0.97890 1.87942 1.21267 1.26826 1.93522 1.22732 0.82681 0.94477 0.99484 0.90681 1.21456 0.99559 0.88900 0.89524 1.45758 1.55119 1.07196 1.27767 1.21047 0.82175 0.83439 0.88040 1.90845 1.38108 1.66560 1.42006 1.21632 1.00262 0.76767 0.81143 1.93072 1.92055 1.83396 1.48363 1.93074 1.92684 1.33632 1.96273 1.22041 1.01157 0.81829 0.98456 0.92154 0.89216 0.89103 0.90433 0.88078 0.87282 0.92202 0.88778 0.89461 0.75392 0.84403 0.87560 0.90440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.59 13.22 55.49 0.73 -24.86 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 20.84 29.55 -169.99 -5.02 15.82 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -14.78 9.50 30.94 0.29 -14.48 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.15 -2.86 4.53 36.00 0.16 -2.70 16 11 C 0.54 9.49 7.73 -10.98 -0.08 9.40 16 12 O -0.51 -11.03 15.33 5.56 0.09 -10.94 16 13 N -0.62 -7.91 3.02 -172.25 -0.52 -8.43 16 14 C 0.07 0.66 6.54 -3.53 -0.02 0.64 16 15 C 0.05 0.35 6.98 37.31 0.26 0.61 16 16 O -0.38 -2.98 10.33 -35.23 -0.36 -3.34 16 17 C 0.07 0.52 2.81 -26.56 -0.07 0.45 16 18 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 19 C 0.13 0.95 5.34 -4.04 -0.02 0.93 16 20 N -0.71 -4.56 5.51 -60.29 -0.33 -4.89 16 21 C 0.47 3.90 7.63 -10.99 -0.08 3.82 16 22 O -0.50 -6.28 16.62 5.56 0.09 -6.19 16 23 C 0.26 1.52 5.72 36.01 0.21 1.73 16 24 F -0.19 -1.29 17.32 2.25 0.04 -1.25 16 25 F -0.18 -1.57 16.95 2.25 0.04 -1.53 16 26 C 0.09 0.94 5.93 -3.51 -0.02 0.91 16 27 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.09 1.54 7.66 -51.92 -0.40 1.14 16 29 H 0.09 1.59 8.01 -51.92 -0.42 1.18 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.10 0.91 6.05 -51.93 -0.31 0.60 16 32 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.41 1.78 8.47 -40.82 -0.35 1.44 16 37 H 0.14 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.11 1.27 7.08 -51.93 -0.37 0.90 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 356.49 15.07 5.37 5.37 Total: -1.00 -36.75 356.49 -6.34 -43.09 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -4.77 Total: -2.31 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 0.52 Total: 3.25 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: -0.12 Total: -38.18 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.19 Total: -20.48 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.08 Total: -2.78 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.75 -6.34 -43.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001064881127.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.416 kcal (2) G-P(sol) polarization free energy of solvation -36.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds