Wall clock time and date at job start Tue Mar 31 2020 21:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.39836 * 125.39280 * 2 1 4 4 C 1.30239 * 110.09432 * 180.02562 * 3 2 1 5 5 C 1.45853 * 107.65706 * 359.97438 * 4 3 2 6 6 C 1.39992 * 134.25572 * 179.97438 * 5 4 3 7 7 C 1.37027 * 118.15329 * 179.73317 * 6 5 4 8 8 S 1.76206 * 120.17511 * 180.28151 * 7 6 5 9 9 O 1.42101 * 106.39988 * 23.80100 * 8 7 6 10 10 O 1.42098 * 106.39962 * 156.71995 * 8 7 6 11 11 N 1.65597 * 107.21658 * 270.25727 * 8 7 6 12 12 C 1.34776 * 120.00061 * 65.00470 * 11 8 7 13 13 O 1.21280 * 120.00008 * 359.97438 * 12 11 8 14 14 C 1.50695 * 120.00084 * 179.97438 * 12 11 8 15 15 C 1.53005 * 109.47150 * 180.02562 * 14 12 11 16 16 C 1.50705 * 109.47200 * 180.02562 * 15 14 12 17 17 H 1.07996 * 119.99685 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00032 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99817 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99892 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46950 * 60.00635 * 20 18 16 22 22 H 1.48505 * 109.46981 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47592 * 300.00148 * 20 18 16 24 24 C 1.38798 * 119.64527 * 0.54365 * 7 6 5 25 25 N 1.31511 * 121.59225 * 359.43629 * 24 7 6 26 26 C 1.32767 * 121.46875 * 0.28413 * 25 24 7 27 27 H 1.08997 * 109.47131 * 269.95526 * 1 2 3 28 28 H 1.09003 * 109.47385 * 29.95429 * 1 2 3 29 29 H 1.09003 * 109.47750 * 149.95195 * 1 2 3 30 30 H 1.08004 * 126.16715 * 179.97438 * 4 3 2 31 31 H 1.07996 * 120.92233 * 0.02562 * 6 5 4 32 32 H 0.96992 * 120.00121 * 244.99646 * 11 8 7 33 33 H 1.09002 * 109.47275 * 299.99510 * 14 12 11 34 34 H 1.08994 * 109.47165 * 60.00271 * 14 12 11 35 35 H 1.08994 * 109.46838 * 300.00045 * 15 14 12 36 36 H 1.08999 * 109.47326 * 59.99798 * 15 14 12 37 37 H 0.97009 * 119.99748 * 179.97438 * 19 18 16 38 38 H 1.08002 * 119.20742 * 179.72388 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2748 1.1399 0.0000 4 6 3.5311 0.7963 -0.0005 5 6 3.5911 -0.6610 -0.0003 6 6 4.6331 -1.5958 -0.0011 7 6 4.3076 -2.9269 0.0051 8 16 5.5768 -4.1491 0.0119 9 8 6.7306 -3.5263 0.5599 10 8 4.9969 -5.3267 0.5559 11 7 5.9360 -4.4916 -1.5680 12 6 6.4771 -3.5424 -2.3571 13 8 6.7006 -2.4373 -1.9102 14 6 6.8045 -3.8542 -3.7946 15 6 7.4037 -2.6145 -4.4617 16 6 7.7306 -2.9262 -5.8995 17 1 7.5312 -3.9101 -6.2975 18 6 8.2840 -1.9551 -6.7068 19 7 8.5272 -0.7571 -6.2219 20 14 8.6897 -2.3417 -8.4887 21 1 7.4503 -2.7388 -9.2036 22 1 9.2701 -1.1380 -9.1365 23 1 9.6708 -3.4551 -8.5428 24 6 2.9727 -3.3072 0.0004 25 7 2.0032 -2.4187 0.0012 26 6 2.2573 -1.1155 0.0008 27 1 -0.3633 -0.0008 1.0276 28 1 -0.3634 0.8904 -0.5131 29 1 -0.3635 -0.8895 -0.5146 30 1 4.3759 1.4692 -0.0011 31 1 5.6649 -1.2768 -0.0017 32 1 5.7570 -5.3753 -1.9254 33 1 7.5246 -4.6715 -3.8342 34 1 5.8948 -4.1457 -4.3194 35 1 6.6840 -1.7969 -4.4221 36 1 8.3136 -2.3234 -3.9368 37 1 8.9170 -0.0739 -6.7898 38 1 2.7242 -4.3582 0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324013021.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:42 Heat of formation + Delta-G solvation = -8.989765 kcal Electronic energy + Delta-G solvation = -26568.915686 eV Core-core repulsion = 22540.421418 eV Total energy + Delta-G solvation = -4028.494267 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.088 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.89885 -39.77368 -38.50091 -37.35088 -36.03750 -34.31642 -34.23030 -33.63924 -32.15718 -31.09922 -30.62990 -27.19571 -26.08206 -24.49519 -23.53598 -22.66532 -21.28467 -20.41703 -19.85845 -18.44333 -18.10409 -17.70964 -17.17911 -17.03513 -16.18394 -16.01549 -15.66478 -15.29370 -14.93505 -14.54734 -14.40695 -14.04626 -13.97706 -13.84207 -13.45480 -12.93378 -12.80409 -12.77726 -12.64832 -12.28571 -12.22377 -12.15206 -11.87926 -11.34646 -11.25302 -11.08410 -10.99188 -10.74810 -10.70681 -10.11427 -10.03108 -9.85431 -9.54368 -9.41259 -9.22266 -8.89431 -8.41149 -6.05210 -4.10283 0.05258 0.45636 0.53845 1.75839 2.10622 2.39443 2.70282 3.22875 3.29354 3.34855 3.35897 3.54607 3.78591 3.88892 4.02273 4.37813 4.42637 4.57143 4.63252 4.81662 4.87281 4.96153 5.08791 5.13790 5.20872 5.21651 5.30396 5.50815 5.88812 5.97536 5.99153 6.06875 6.34063 6.53800 6.85620 7.02890 7.43144 7.61050 7.69391 7.81341 7.93833 8.29181 8.96601 9.54108 11.05489 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.011056 B = 0.003454 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.850293 B = 8103.944084 C = 9764.019011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.392 5.392 3 N -0.243 5.243 4 C 0.111 3.889 5 C -0.253 4.253 6 C 0.145 3.855 7 C -0.777 4.777 8 S 2.691 3.309 9 O -0.929 6.929 10 O -0.951 6.951 11 N -1.058 6.058 12 C 0.531 3.469 13 O -0.488 6.488 14 C -0.131 4.131 15 C 0.033 3.967 16 C -0.531 4.531 17 H 0.057 0.943 18 C 0.060 3.940 19 N -0.888 5.888 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.276 1.276 24 C 0.259 3.741 25 N -0.511 5.511 26 C 0.349 3.651 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.211 0.789 31 H 0.169 0.831 32 H 0.434 0.566 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.025 0.975 36 H 0.028 0.972 37 H 0.262 0.738 38 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.775 -3.919 13.621 19.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.180 5.180 3 N -0.054 5.054 4 C -0.088 4.088 5 C -0.263 4.263 6 C 0.116 3.884 7 C -0.869 4.869 8 S 2.781 3.219 9 O -0.919 6.919 10 O -0.941 6.941 11 N -0.825 5.825 12 C 0.320 3.680 13 O -0.358 6.358 14 C -0.173 4.173 15 C -0.004 4.004 16 C -0.569 4.569 17 H 0.075 0.925 18 C -0.142 4.142 19 N -0.526 5.526 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C 0.086 3.914 25 N -0.226 5.226 26 C 0.109 3.891 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.227 0.773 31 H 0.186 0.814 32 H 0.270 0.730 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.044 0.956 36 H 0.047 0.953 37 H 0.072 0.928 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -15.119 -2.381 14.618 21.165 hybrid contribution 0.851 -0.546 -1.536 1.838 sum -14.268 -2.927 13.083 19.578 Atomic orbital electron populations 1.21884 0.73019 1.04788 1.03446 1.48336 1.06614 1.00075 1.63025 1.76845 1.02657 1.06856 1.19072 1.25273 0.94990 0.92570 0.95932 1.20564 0.94326 0.95055 1.16405 1.20788 1.00232 0.89504 0.77847 1.31147 1.15150 1.13230 1.27332 1.02243 0.73836 0.73293 0.72516 1.93643 1.46188 1.76997 1.75053 1.93613 1.79132 1.45942 1.75422 1.55201 1.70832 1.23615 1.32819 1.21728 0.73096 0.82917 0.90266 1.90788 1.48629 1.21462 1.74906 1.22068 1.02966 1.04791 0.87501 1.18985 0.96817 0.90226 0.94417 1.21127 1.42260 0.97980 0.95577 0.92484 1.25008 0.95573 0.95037 0.98622 1.69974 1.43194 1.03199 1.36270 0.86634 0.78674 0.77737 0.84779 1.20259 1.21263 1.20165 1.22449 0.85625 0.98900 0.84390 1.66873 1.36801 0.98661 1.20299 1.19241 0.88835 0.88351 0.92627 0.90848 0.89070 0.88969 0.77264 0.81369 0.72988 0.88862 0.89035 0.95636 0.95327 0.92784 0.80111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.88 11.44 59.84 0.68 1.56 16 2 N -0.39 -4.83 4.04 -67.21 -0.27 -5.10 16 3 N -0.24 -3.05 12.40 31.85 0.39 -2.66 16 4 C 0.11 1.29 12.29 -15.18 -0.19 1.11 16 5 C -0.25 -3.44 6.38 -105.18 -0.67 -4.11 16 6 C 0.14 1.99 8.63 -39.36 -0.34 1.65 16 7 C -0.78 -9.96 5.73 -39.81 -0.23 -10.19 16 8 S 2.69 34.32 5.40 -107.50 -0.58 33.74 16 9 O -0.93 -15.11 16.27 -64.60 -1.05 -16.16 16 10 O -0.95 -12.19 17.28 -57.17 -0.99 -13.18 16 11 N -1.06 -12.34 5.70 31.22 0.18 -12.16 16 12 C 0.53 8.56 7.66 -10.99 -0.08 8.47 16 13 O -0.49 -9.41 13.19 -11.50 -0.15 -9.56 16 14 C -0.13 -2.29 5.64 -27.88 -0.16 -2.45 16 15 C 0.03 0.82 4.26 -27.88 -0.12 0.70 16 16 C -0.53 -14.12 9.11 -34.44 -0.31 -14.43 16 17 H 0.06 1.42 7.74 -52.49 -0.41 1.01 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 20 Si 0.89 20.83 29.54 -169.99 -5.02 15.80 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 C 0.26 3.06 10.65 -17.48 -0.19 2.88 16 25 N -0.51 -6.74 10.40 -12.34 -0.13 -6.87 16 26 C 0.35 4.81 7.97 -156.10 -1.24 3.57 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.21 1.65 8.06 -52.48 -0.42 1.22 16 31 H 0.17 2.29 6.91 -52.49 -0.36 1.93 16 32 H 0.43 3.26 8.83 -34.47 -0.30 2.95 16 33 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.03 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.03 0.77 8.10 -51.93 -0.42 0.34 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.18 1.54 7.60 -52.49 -0.40 1.14 16 LS Contribution 348.39 15.07 5.25 5.25 Total: -1.00 -37.19 348.39 -8.56 -45.75 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -3.98 Total: 0.22 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -2.94 Total: -9.68 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 0.91 Total: -52.18 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -2.19 Total: -38.90 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 34.32 SS G_CDS: -0.58 Total: 33.74 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -37.19 -8.56 -45.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324013021.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.757 kcal (2) G-P(sol) polarization free energy of solvation -37.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds