Wall clock time and date at job start Tue Mar 31 2020 21:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86794 * 120.00040 * 2 1 4 4 H 1.48507 * 109.47163 * 269.72138 * 3 2 1 5 5 H 1.48497 * 109.47402 * 29.71930 * 3 2 1 6 6 H 1.48494 * 109.47365 * 149.72205 * 3 2 1 7 7 C 1.38632 * 119.99529 * 179.72060 * 2 1 3 8 8 H 1.07994 * 120.00712 * 0.27943 * 7 2 1 9 9 O 1.34825 * 119.99574 * 180.27705 * 7 2 1 10 10 C 1.35773 * 116.99360 * 175.92662 * 9 7 2 11 11 C 1.38912 * 119.99609 * 175.07072 * 10 9 7 12 12 C 1.38008 * 119.99097 * 179.74195 * 11 10 9 13 13 C 1.38875 * 120.00614 * 0.50764 * 12 11 10 14 14 N 1.40260 * 119.99632 * 179.74682 * 13 12 11 15 15 C 1.35190 * 124.26261 * 173.81661 * 14 13 12 16 16 O 1.21239 * 127.33435 * 355.30524 * 15 14 13 17 17 C 1.50777 * 105.32873 * 175.33942 * 15 14 13 18 18 H 1.08997 * 112.03924 * 250.56322 * 17 15 14 19 19 C 1.53613 * 112.42245 * 123.35441 * 17 15 14 20 20 C 1.54746 * 104.44955 * 222.79476 * 19 17 15 21 21 F 1.39904 * 110.36884 * 120.68737 * 20 19 17 22 22 F 1.39893 * 110.37389 * 243.01605 * 20 19 17 23 23 C 1.54916 * 104.81891 * 1.85557 * 20 19 17 24 24 N 1.47106 * 103.93300 * 24.16385 * 23 20 19 25 25 C 1.33308 * 150.13678 * 131.86164 * 24 23 20 26 26 O 1.21540 * 124.08093 * 20.98314 * 25 24 23 27 27 C 1.38873 * 120.00497 * 359.76798 * 13 12 11 28 28 C 1.38002 * 120.00576 * 359.97438 * 27 13 12 29 29 H 0.97000 * 120.00027 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00634 * 359.97438 * 11 10 9 31 31 H 1.08001 * 119.99644 * 180.27510 * 12 11 10 32 32 H 1.08992 * 110.44055 * 341.54075 * 19 17 15 33 33 H 1.09004 * 110.43611 * 104.05794 * 19 17 15 34 34 H 1.09002 * 110.53905 * 142.77973 * 23 20 19 35 35 H 1.09005 * 110.53574 * 265.40990 * 23 20 19 36 36 H 1.08001 * 119.99825 * 179.97438 * 27 13 12 37 37 H 1.08000 * 120.00701 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.5031 2.0430 -1.4001 5 1 1.4443 2.6544 0.6941 6 1 3.5443 1.4419 0.7059 7 6 2.0088 -1.2006 0.0059 8 1 1.4689 -2.1359 0.0059 9 8 3.3571 -1.2006 0.0115 10 6 3.9729 -2.4072 0.1030 11 6 5.3566 -2.4893 0.0112 12 6 5.9829 -3.7152 0.1095 13 6 5.2293 -4.8677 0.2897 14 7 5.8657 -6.1140 0.3843 15 6 5.2323 -7.2716 0.6781 16 8 4.0666 -7.4163 0.9785 17 6 6.2844 -8.3444 0.5533 18 1 6.1194 -8.9799 -0.3167 19 6 6.4419 -9.1634 1.8433 20 6 7.9717 -9.3190 2.0176 21 9 8.3819 -8.7657 3.2353 22 9 8.3351 -10.6681 1.9475 23 6 8.5873 -8.5325 0.8334 24 7 7.5449 -7.5583 0.4751 25 6 7.1798 -6.3086 0.1887 26 8 7.9449 -5.4475 -0.1992 27 6 3.8456 -4.7862 0.3757 28 6 3.2193 -3.5600 0.2828 29 1 -0.4850 0.8400 -0.0004 30 1 5.9424 -1.5936 -0.1334 31 1 7.0590 -3.7786 0.0426 32 1 6.0151 -8.6259 2.6900 33 1 5.9700 -10.1399 1.7342 34 1 9.4976 -8.0209 1.1461 35 1 8.7935 -9.2003 -0.0032 36 1 3.2596 -5.6826 0.5154 37 1 2.1432 -3.4967 0.3493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334886021.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:17 Heat of formation + Delta-G solvation = -92.963365 kcal Electronic energy + Delta-G solvation = -28826.666100 eV Core-core repulsion = 24208.397327 eV Total energy + Delta-G solvation = -4618.268773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.091 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.56934 -47.68478 -43.10463 -39.37114 -38.91659 -38.13222 -36.65412 -35.34822 -32.49549 -31.66843 -30.74964 -30.37463 -28.04224 -25.94060 -25.39177 -23.43536 -22.93573 -21.55114 -21.31145 -20.49649 -18.71069 -18.17607 -17.90615 -17.55353 -17.43754 -17.19928 -16.90561 -16.12742 -15.94083 -15.43692 -15.21887 -14.85362 -14.54801 -14.23401 -14.09842 -13.98732 -13.98299 -13.90369 -13.78611 -13.33357 -13.08032 -12.79842 -12.60238 -12.54374 -12.36080 -12.14301 -12.07104 -11.75453 -11.19259 -11.02124 -10.65672 -10.42981 -10.23662 -9.99613 -9.73480 -9.43280 -8.89256 -8.43954 -7.29204 -6.49619 -4.15470 1.21346 1.39650 1.80519 1.98778 2.55818 2.67791 2.88134 3.00861 3.19542 3.22096 3.36513 3.44794 3.68177 3.78981 4.07343 4.17797 4.29918 4.36368 4.40809 4.69399 4.72043 4.77100 5.01397 5.02401 5.10339 5.30141 5.41006 5.53185 5.83955 5.99036 6.20754 6.39272 6.66149 6.72236 6.79692 7.07469 7.14937 7.15883 7.43950 7.67536 7.80049 7.94024 8.84579 9.44501 10.57376 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.029218 B = 0.002554 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.096784 B =10960.061593 C =11473.014720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.258 1.258 7 C -0.391 4.391 8 H 0.109 0.891 9 O -0.209 6.209 10 C 0.159 3.841 11 C -0.176 4.176 12 C -0.081 4.081 13 C 0.023 3.977 14 N -0.500 5.500 15 C 0.522 3.478 16 O -0.448 6.448 17 C 0.047 3.953 18 H 0.150 0.850 19 C -0.155 4.155 20 C 0.272 3.728 21 F -0.182 7.182 22 F -0.180 7.180 23 C 0.134 3.866 24 N -0.640 5.640 25 C 0.744 3.256 26 O -0.513 6.513 27 C -0.079 4.079 28 C -0.206 4.206 29 H 0.281 0.719 30 H 0.127 0.873 31 H 0.149 0.851 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.139 0.861 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.770 -20.898 1.970 26.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.182 1.182 7 C -0.466 4.466 8 H 0.126 0.874 9 O -0.113 6.113 10 C 0.106 3.894 11 C -0.196 4.196 12 C -0.101 4.101 13 C -0.066 4.066 14 N -0.237 5.237 15 C 0.309 3.691 16 O -0.317 6.317 17 C -0.062 4.062 18 H 0.167 0.833 19 C -0.194 4.194 20 C 0.234 3.766 21 F -0.162 7.162 22 F -0.161 7.161 23 C 0.012 3.988 24 N -0.381 5.381 25 C 0.449 3.551 26 O -0.384 6.384 27 C -0.098 4.098 28 C -0.226 4.226 29 H 0.091 0.909 30 H 0.145 0.855 31 H 0.166 0.834 32 H 0.132 0.868 33 H 0.144 0.856 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.156 0.844 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 15.664 -19.915 1.878 25.407 hybrid contribution 0.136 0.467 0.144 0.507 sum 15.800 -19.448 2.022 25.139 Atomic orbital electron populations 1.69652 1.05611 1.28718 1.47113 1.24489 0.95054 0.98965 0.95422 0.86165 0.80348 0.81237 0.79102 1.19739 1.20712 1.18232 1.20805 0.76769 0.96791 1.52268 0.87417 1.83588 1.22784 1.25421 1.79487 1.19255 0.91702 0.85616 0.92872 1.20105 0.91701 0.97501 1.10281 1.21052 1.00770 0.89822 0.98437 1.17298 0.91727 0.81226 1.16372 1.43735 1.08294 1.09524 1.62176 1.20446 0.88499 0.83825 0.76327 1.90766 1.14994 1.83365 1.42565 1.23205 0.86730 0.94737 1.01536 0.83312 1.23324 0.93132 1.04396 0.98570 1.22092 0.94729 0.76705 0.83058 1.93101 1.91759 1.84900 1.46481 1.93078 1.93083 1.33528 1.96374 1.22902 0.90584 0.89206 0.96138 1.48078 1.08110 1.07571 1.74330 1.14608 0.81701 0.80350 0.78466 1.90909 1.54558 1.44523 1.48399 1.20982 0.91328 0.99031 0.98485 1.21154 1.01401 0.91089 1.08928 0.90872 0.85537 0.83402 0.86822 0.85606 0.86336 0.86271 0.84369 0.83979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.80 13.96 55.48 0.77 -24.03 16 2 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 3 Si 0.91 21.28 28.62 -169.99 -4.86 16.41 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.26 -6.09 7.11 56.52 0.40 -5.68 16 7 C -0.39 -10.78 9.92 30.88 0.31 -10.48 16 8 H 0.11 3.02 5.48 -52.49 -0.29 2.74 16 9 O -0.21 -5.39 8.58 -0.01 0.00 -5.39 16 10 C 0.16 3.62 6.65 -39.09 -0.26 3.36 16 11 C -0.18 -3.51 9.99 -39.42 -0.39 -3.91 16 12 C -0.08 -1.50 9.23 -39.43 -0.36 -1.86 16 13 C 0.02 0.41 6.57 -83.53 -0.55 -0.14 16 14 N -0.50 -7.33 2.85 -64.69 -0.18 -7.51 16 15 C 0.52 6.39 7.44 -10.76 -0.08 6.31 16 16 O -0.45 -6.49 15.15 5.59 0.08 -6.40 16 17 C 0.05 0.35 3.94 -67.48 -0.27 0.08 16 18 H 0.15 0.62 8.14 -51.93 -0.42 0.19 16 19 C -0.16 -0.88 6.33 -25.49 -0.16 -1.04 16 20 C 0.27 1.62 2.72 -24.80 -0.07 1.56 16 21 F -0.18 -1.54 17.11 2.25 0.04 -1.50 16 22 F -0.18 -1.07 17.11 2.25 0.04 -1.03 16 23 C 0.13 0.71 7.14 -2.70 -0.02 0.69 16 24 N -0.64 -5.81 4.14 -169.91 -0.70 -6.51 16 25 C 0.74 10.09 8.43 -88.66 -0.75 9.34 16 26 O -0.51 -8.36 14.80 5.33 0.08 -8.28 16 27 C -0.08 -1.49 9.30 -39.43 -0.37 -1.86 16 28 C -0.21 -4.42 9.14 -39.42 -0.36 -4.78 16 29 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.13 2.32 8.06 -52.49 -0.42 1.90 16 31 H 0.15 2.62 5.30 -52.49 -0.28 2.34 16 32 H 0.11 0.78 7.79 -51.93 -0.40 0.37 16 33 H 0.13 0.41 8.05 -51.93 -0.42 -0.01 16 34 H 0.12 0.58 8.13 -51.93 -0.42 0.15 16 35 H 0.12 0.29 8.13 -51.93 -0.42 -0.13 16 36 H 0.14 2.49 5.44 -52.49 -0.29 2.21 16 37 H 0.14 3.16 5.67 -52.49 -0.30 2.87 16 LS Contribution 324.43 15.07 4.89 4.89 Total: -1.00 -32.22 324.43 -6.07 -38.29 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -2.80 Total: 2.11 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -3.42 Total: -1.04 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: -0.11 Total: -38.05 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: 0.16 Total: -20.07 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.08 Total: -2.53 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.86 Total: 16.41 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.22 -6.07 -38.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334886021.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.675 kcal (2) G-P(sol) polarization free energy of solvation -32.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds