Wall clock time and date at job start Tue Mar 31 2020 21:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99898 * 2 1 4 4 C 1.53000 * 109.47311 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47154 * 65.00017 * 4 3 2 6 6 C 1.36909 * 119.99825 * 264.49895 * 5 4 3 7 7 H 1.08002 * 119.99458 * 141.10735 * 6 5 4 8 8 C 1.39014 * 120.00028 * 321.10337 * 6 5 4 9 9 N 1.31378 * 120.00302 * 339.67167 * 8 6 5 10 10 Si 1.86802 * 119.99744 * 159.67246 * 8 6 5 11 11 H 1.48497 * 109.47428 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46889 * 120.00094 * 10 8 6 13 13 H 1.48503 * 109.46930 * 239.99731 * 10 8 6 14 14 C 1.34771 * 120.00105 * 84.49860 * 5 4 3 15 15 O 1.21632 * 119.99852 * 5.26118 * 14 5 4 16 16 C 1.47411 * 120.00266 * 185.26326 * 14 5 4 17 17 C 1.39984 * 120.25693 * 315.73376 * 16 14 5 18 18 C 1.37148 * 119.80608 * 180.02562 * 17 16 14 19 19 C 1.39298 * 121.00984 * 359.97438 * 18 17 16 20 20 C 1.39583 * 119.18866 * 359.97438 * 19 18 17 21 21 C 1.37660 * 120.32783 * 0.04220 * 20 19 18 22 22 Cl 1.73599 * 119.91090 * 179.97438 * 21 20 19 23 23 N 1.39105 * 110.19425 * 179.72556 * 19 18 17 24 24 C 1.34334 * 112.37812 * 0.45888 * 23 19 18 25 25 O 1.21282 * 126.41917 * 179.81599 * 24 23 19 26 26 C 1.51189 * 132.71959 * 179.97438 * 18 17 16 27 27 H 1.08997 * 109.47592 * 300.00013 * 1 2 3 28 28 H 1.09001 * 109.46810 * 60.00380 * 1 2 3 29 29 H 1.08997 * 109.46877 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46881 * 60.00020 * 3 2 1 31 31 H 1.08998 * 109.47032 * 299.99979 * 3 2 1 32 32 H 1.09006 * 109.46978 * 305.00001 * 4 3 2 33 33 H 1.09003 * 109.47508 * 185.00316 * 4 3 2 34 34 H 0.97001 * 120.00228 * 179.97438 * 9 8 6 35 35 H 1.07999 * 120.09632 * 0.04022 * 17 16 14 36 36 H 1.08007 * 119.83553 * 180.02562 * 20 19 18 37 37 H 0.96994 * 123.80967 * 180.31964 * 23 19 18 38 38 H 1.08997 * 110.52324 * 61.39030 * 26 18 17 39 39 H 1.08992 * 110.64091 * 298.70786 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.2063 -0.7846 -1.3023 7 1 3.9197 -1.3481 -2.1779 8 6 4.8085 -1.4287 -0.2275 9 7 5.5087 -0.7382 0.6436 10 14 4.6219 -3.2760 -0.0220 11 1 3.7920 -3.8159 -1.1287 12 1 5.9620 -3.9151 -0.0515 13 1 3.9639 -3.5654 1.2775 14 6 4.1565 1.3207 -2.3515 15 8 4.0458 2.5301 -2.2829 16 6 4.4875 0.6828 -3.6386 17 6 5.4468 -0.3351 -3.6952 18 6 5.7479 -0.9219 -4.8977 19 6 5.1123 -0.5215 -6.0708 20 6 4.1549 0.4927 -6.0142 21 6 3.8446 1.0894 -4.8131 22 17 2.6526 2.3503 -4.7553 23 7 5.5901 -1.2565 -7.1508 24 6 6.5195 -2.1554 -6.7866 25 8 7.1000 -2.9281 -7.5193 26 6 6.7110 -2.0190 -5.2911 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8507 0.5686 0.8428 33 1 3.9784 2.1766 0.0903 34 1 5.9286 -1.1876 1.3938 35 1 5.9481 -0.6575 -2.7947 36 1 3.6554 0.8111 -6.9173 37 1 5.2851 -1.1351 -8.0635 38 1 6.4556 -2.9507 -4.7864 39 1 7.7366 -1.7302 -5.0619 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344520249.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:41 Heat of formation + Delta-G solvation = -70.604097 kcal Electronic energy + Delta-G solvation = -27477.518608 eV Core-core repulsion = 23412.016085 eV Total energy + Delta-G solvation = -4065.502522 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.087 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.35714 -39.17229 -37.94123 -36.97765 -36.29936 -34.99828 -34.76887 -32.11308 -31.69624 -30.31443 -28.64512 -27.71252 -25.86076 -24.93589 -23.40709 -22.27956 -21.33115 -21.00480 -19.30185 -17.97630 -17.64014 -16.67123 -16.28389 -15.99260 -15.50440 -15.48394 -14.91636 -14.76402 -14.41633 -14.35151 -13.94470 -13.90492 -13.53612 -13.35299 -13.14464 -12.90616 -12.65764 -12.32449 -12.04230 -11.67083 -11.56799 -11.32796 -11.19022 -11.06084 -10.93737 -10.76797 -10.50332 -10.38594 -10.27019 -10.25241 -10.03063 -9.20575 -9.01749 -8.61176 -8.48916 -7.82583 -7.57029 -6.44906 -4.09461 1.07988 1.44272 2.38000 2.41028 3.07085 3.09907 3.22668 3.26126 3.55575 4.05482 4.11102 4.18873 4.44417 4.52185 4.66448 4.92063 5.02089 5.33293 5.36473 5.44869 5.60728 5.65565 5.71233 5.80024 5.95229 6.00059 6.04439 6.05521 6.13877 6.26283 6.47175 6.55951 6.67901 6.69575 6.76900 7.06084 7.17564 7.38544 7.74183 7.90392 7.91859 8.28962 9.00324 9.38829 9.81564 10.57766 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.010131 B = 0.005355 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.173363 B = 5227.357399 C = 7029.558922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.051 3.949 4 C 0.119 3.881 5 N -0.416 5.416 6 C -0.328 4.328 7 H 0.089 0.911 8 C 0.052 3.948 9 N -0.856 5.856 10 Si 0.909 3.091 11 H -0.267 1.267 12 H -0.282 1.282 13 H -0.279 1.279 14 C 0.508 3.492 15 O -0.586 6.586 16 C -0.092 4.092 17 C 0.001 3.999 18 C -0.154 4.154 19 C 0.149 3.851 20 C -0.148 4.148 21 C 0.027 3.973 22 Cl -0.049 7.049 23 N -0.655 5.655 24 C 0.531 3.469 25 O -0.513 6.513 26 C -0.112 4.112 27 H 0.030 0.970 28 H 0.032 0.968 29 H 0.077 0.923 30 H 0.040 0.960 31 H 0.042 0.958 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.270 0.730 35 H 0.165 0.835 36 H 0.133 0.867 37 H 0.410 0.590 38 H 0.126 0.874 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.505 -0.106 -6.884 7.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.027 4.027 4 C -0.005 4.005 5 N -0.132 5.132 6 C -0.456 4.456 7 H 0.107 0.893 8 C -0.155 4.155 9 N -0.492 5.492 10 Si 0.735 3.265 11 H -0.191 1.191 12 H -0.208 1.208 13 H -0.204 1.204 14 C 0.296 3.704 15 O -0.472 6.472 16 C -0.097 4.097 17 C -0.018 4.018 18 C -0.157 4.157 19 C 0.051 3.949 20 C -0.169 4.169 21 C -0.001 4.001 22 Cl -0.020 7.020 23 N -0.298 5.298 24 C 0.320 3.680 25 O -0.388 6.388 26 C -0.151 4.151 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.129 0.871 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.182 0.818 36 H 0.151 0.849 37 H 0.248 0.752 38 H 0.144 0.856 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.043 -0.105 -6.941 7.580 hybrid contribution -0.817 -0.564 -0.267 1.027 sum -3.859 -0.668 -7.208 8.204 Atomic orbital electron populations 1.22641 0.83339 1.01749 0.98877 1.88119 1.17452 1.27717 1.95060 1.23050 0.96404 0.84390 0.98837 1.21424 0.89186 0.99252 0.90594 1.43167 1.55407 1.07371 1.07283 1.19360 1.38851 0.82253 1.05102 0.89296 1.25264 0.93909 0.99760 0.96586 1.69917 1.27986 1.37012 1.14326 0.86167 0.78046 0.83254 0.79024 1.19073 1.20834 1.20423 1.17893 0.81826 0.86244 0.84433 1.90678 1.57021 1.13507 1.85954 1.19853 0.98272 0.97848 0.93722 1.20877 0.93662 0.90447 0.96795 1.19777 1.01497 1.01366 0.93093 1.17916 0.96095 0.93835 0.87053 1.19816 1.01039 0.98695 0.97382 1.20448 0.93824 0.92681 0.93184 1.98371 1.54751 1.50184 1.98707 1.43563 1.40018 1.36172 1.10034 1.20690 0.77649 0.78540 0.91171 1.90795 1.49525 1.38116 1.60386 1.21041 1.01500 0.99972 0.92570 0.95144 0.94944 0.90433 0.94165 0.93938 0.87149 0.90793 0.91932 0.81757 0.84940 0.75184 0.85632 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.37 -7.41 10.44 -35.23 -0.37 -7.78 16 3 C 0.05 1.00 6.24 37.16 0.23 1.24 16 4 C 0.12 2.66 5.32 -4.04 -0.02 2.64 16 5 N -0.42 -9.69 2.47 -116.03 -0.29 -9.97 16 6 C -0.33 -7.60 6.37 -15.00 -0.10 -7.70 16 7 H 0.09 2.04 6.54 -52.49 -0.34 1.70 16 8 C 0.05 1.20 4.91 -17.46 -0.09 1.11 16 9 N -0.86 -20.87 11.58 55.50 0.64 -20.23 16 10 Si 0.91 18.62 29.60 -169.99 -5.03 13.58 16 11 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 12 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 13 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 14 C 0.51 11.63 6.82 -12.53 -0.09 11.54 16 15 O -0.59 -14.44 15.20 5.25 0.08 -14.36 16 16 C -0.09 -1.82 5.21 -104.87 -0.55 -2.37 16 17 C 0.00 0.02 7.80 -39.32 -0.31 -0.28 16 18 C -0.15 -2.28 6.33 -104.38 -0.66 -2.94 16 19 C 0.15 2.04 7.11 -83.66 -0.59 1.44 16 20 C -0.15 -2.09 9.83 -39.29 -0.39 -2.48 16 21 C 0.03 0.48 6.32 -39.16 -0.25 0.23 16 22 Cl -0.05 -0.86 26.97 -51.86 -1.40 -2.26 16 23 N -0.66 -7.74 5.85 -9.66 -0.06 -7.80 16 24 C 0.53 7.10 8.71 -10.85 -0.09 7.00 16 25 O -0.51 -8.27 18.03 5.56 0.10 -8.17 16 26 C -0.11 -1.38 6.88 -28.46 -0.20 -1.58 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.11 2.64 5.66 -51.93 -0.29 2.34 16 33 H 0.07 1.66 7.52 -51.93 -0.39 1.27 16 34 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16 35 H 0.17 3.11 6.50 -52.49 -0.34 2.77 16 36 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 37 H 0.41 3.80 8.96 -40.82 -0.37 3.43 16 38 H 0.13 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 348.87 15.07 5.26 5.26 Total: -1.00 -28.94 348.87 -7.29 -36.23 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -4.25 Total: 6.04 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: -1.98 Total: 9.45 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.30 Total: -38.00 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.19 Total: -30.31 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.58 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.40 Total: -2.26 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.94 -7.29 -36.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344520249.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.370 kcal (2) G-P(sol) polarization free energy of solvation -28.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds