Wall clock time and date at job start Tue Mar 31 2020 21:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99898 * 2 1 4 4 C 1.53000 * 109.47311 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47154 * 65.00017 * 4 3 2 6 6 C 1.36909 * 119.99825 * 264.49895 * 5 4 3 7 7 H 1.08002 * 119.99458 * 141.10735 * 6 5 4 8 8 C 1.39014 * 120.00028 * 321.10337 * 6 5 4 9 9 N 1.31378 * 120.00302 * 339.67167 * 8 6 5 10 10 Si 1.86802 * 119.99744 * 159.67246 * 8 6 5 11 11 H 1.48497 * 109.47428 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46889 * 120.00094 * 10 8 6 13 13 H 1.48503 * 109.46930 * 239.99731 * 10 8 6 14 14 C 1.34771 * 120.00105 * 84.49860 * 5 4 3 15 15 O 1.21632 * 119.99852 * 5.26118 * 14 5 4 16 16 C 1.47411 * 120.00266 * 185.26326 * 14 5 4 17 17 C 1.39984 * 120.25693 * 315.73376 * 16 14 5 18 18 C 1.37148 * 119.80608 * 180.02562 * 17 16 14 19 19 C 1.39298 * 121.00984 * 359.97438 * 18 17 16 20 20 C 1.39583 * 119.18866 * 359.97438 * 19 18 17 21 21 C 1.37660 * 120.32783 * 0.04220 * 20 19 18 22 22 Cl 1.73599 * 119.91090 * 179.97438 * 21 20 19 23 23 N 1.39105 * 110.19425 * 179.72556 * 19 18 17 24 24 C 1.34334 * 112.37812 * 0.45888 * 23 19 18 25 25 O 1.21282 * 126.41917 * 179.81599 * 24 23 19 26 26 C 1.51189 * 132.71959 * 179.97438 * 18 17 16 27 27 H 1.08997 * 109.47592 * 300.00013 * 1 2 3 28 28 H 1.09001 * 109.46810 * 60.00380 * 1 2 3 29 29 H 1.08997 * 109.46877 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46881 * 60.00020 * 3 2 1 31 31 H 1.08998 * 109.47032 * 299.99979 * 3 2 1 32 32 H 1.09006 * 109.46978 * 305.00001 * 4 3 2 33 33 H 1.09003 * 109.47508 * 185.00316 * 4 3 2 34 34 H 0.97001 * 120.00228 * 179.97438 * 9 8 6 35 35 H 1.07999 * 120.09632 * 0.04022 * 17 16 14 36 36 H 1.08007 * 119.83553 * 180.02562 * 20 19 18 37 37 H 0.96994 * 123.80967 * 180.31964 * 23 19 18 38 38 H 1.08997 * 110.52324 * 61.39030 * 26 18 17 39 39 H 1.08992 * 110.64091 * 298.70786 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.2063 -0.7846 -1.3023 7 1 3.9197 -1.3481 -2.1779 8 6 4.8085 -1.4287 -0.2275 9 7 5.5087 -0.7382 0.6436 10 14 4.6219 -3.2760 -0.0220 11 1 3.7920 -3.8159 -1.1287 12 1 5.9620 -3.9151 -0.0515 13 1 3.9639 -3.5654 1.2775 14 6 4.1565 1.3207 -2.3515 15 8 4.0458 2.5301 -2.2829 16 6 4.4875 0.6828 -3.6386 17 6 5.4468 -0.3351 -3.6952 18 6 5.7479 -0.9219 -4.8977 19 6 5.1123 -0.5215 -6.0708 20 6 4.1549 0.4927 -6.0142 21 6 3.8446 1.0894 -4.8131 22 17 2.6526 2.3503 -4.7553 23 7 5.5901 -1.2565 -7.1508 24 6 6.5195 -2.1554 -6.7866 25 8 7.1000 -2.9281 -7.5193 26 6 6.7110 -2.0190 -5.2911 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8507 0.5686 0.8428 33 1 3.9784 2.1766 0.0903 34 1 5.9286 -1.1876 1.3938 35 1 5.9481 -0.6575 -2.7947 36 1 3.6554 0.8111 -6.9173 37 1 5.2851 -1.1351 -8.0635 38 1 6.4556 -2.9507 -4.7864 39 1 7.7366 -1.7302 -5.0619 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344520249.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:40 Heat of formation + Delta-G solvation = -88.884320 kcal Electronic energy + Delta-G solvation = -27478.311298 eV Core-core repulsion = 23412.016085 eV Total energy + Delta-G solvation = -4066.295212 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.087 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.51377 -40.74159 -39.29129 -38.46218 -37.63354 -36.53288 -36.27226 -33.48245 -33.27390 -31.74342 -30.09174 -28.91610 -27.25191 -26.63379 -24.84705 -23.65374 -22.65188 -22.16428 -20.98901 -19.32878 -19.05009 -17.92332 -17.84788 -17.14902 -17.04222 -16.96459 -16.43451 -16.21515 -15.99787 -15.75672 -15.28668 -15.18318 -14.94707 -14.76439 -14.45565 -14.27186 -13.88535 -13.70862 -13.52782 -13.23704 -12.91548 -12.87486 -12.82690 -12.51782 -12.44922 -12.24451 -12.03036 -11.84200 -11.78749 -11.44124 -11.40050 -10.93885 -10.51640 -10.32367 -9.77176 -9.37053 -9.07330 -8.22185 -5.91116 -0.21224 0.18988 1.07849 1.27432 1.47166 1.55474 1.64582 1.99039 2.06843 2.37419 2.64344 2.89714 3.03480 3.09324 3.30209 3.45203 3.76271 4.09350 4.18776 4.22320 4.29244 4.46189 4.51496 4.55935 4.60321 4.64538 4.70688 4.76441 4.82282 4.85837 4.92402 5.18909 5.26088 5.37279 5.45811 5.57436 5.69646 5.82099 6.04915 6.42587 6.49650 6.88496 7.21530 7.62887 8.05604 8.81723 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.010131 B = 0.005355 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.173363 B = 5227.357399 C = 7029.558922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.396 6.396 3 C 0.063 3.937 4 C 0.118 3.882 5 N -0.427 5.427 6 C -0.326 4.326 7 H 0.089 0.911 8 C 0.018 3.982 9 N -0.888 5.888 10 Si 0.964 3.036 11 H -0.261 1.261 12 H -0.275 1.275 13 H -0.287 1.287 14 C 0.500 3.500 15 O -0.614 6.614 16 C -0.126 4.126 17 C -0.005 4.005 18 C -0.150 4.150 19 C 0.166 3.834 20 C -0.132 4.132 21 C 0.018 3.982 22 Cl -0.055 7.055 23 N -0.639 5.639 24 C 0.537 3.463 25 O -0.537 6.537 26 C -0.110 4.110 27 H 0.051 0.949 28 H 0.037 0.963 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.031 0.969 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.271 0.729 35 H 0.146 0.854 36 H 0.167 0.833 37 H 0.426 0.574 38 H 0.142 0.858 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.998 -1.480 -8.697 9.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.015 4.015 4 C -0.006 4.006 5 N -0.143 5.143 6 C -0.454 4.454 7 H 0.107 0.893 8 C -0.185 4.185 9 N -0.525 5.525 10 Si 0.789 3.211 11 H -0.185 1.185 12 H -0.201 1.201 13 H -0.213 1.213 14 C 0.290 3.710 15 O -0.502 6.502 16 C -0.131 4.131 17 C -0.024 4.024 18 C -0.153 4.153 19 C 0.067 3.933 20 C -0.153 4.153 21 C -0.010 4.010 22 Cl -0.026 7.026 23 N -0.283 5.283 24 C 0.326 3.674 25 O -0.415 6.415 26 C -0.148 4.148 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.163 0.837 36 H 0.184 0.816 37 H 0.267 0.733 38 H 0.159 0.841 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.552 -1.483 -8.786 9.592 hybrid contribution -0.670 -0.112 0.212 0.712 sum -4.223 -1.595 -8.574 9.689 Atomic orbital electron populations 1.22872 0.80741 1.03294 1.00165 1.88052 1.20344 1.27765 1.95303 1.22832 0.94536 0.84632 0.99453 1.21345 0.91203 0.97985 0.90044 1.43350 1.55703 1.07629 1.07646 1.19428 1.38531 0.82238 1.05200 0.89309 1.25855 0.93562 1.02838 0.96277 1.70001 1.29165 1.38358 1.14983 0.85325 0.78089 0.79348 0.78381 1.18529 1.20096 1.21329 1.18426 0.80959 0.86081 0.85508 1.90631 1.58178 1.14669 1.86678 1.19695 1.00647 0.99788 0.92932 1.20578 0.93731 0.90741 0.97336 1.19852 1.01655 1.01384 0.92370 1.17885 0.95074 0.93125 0.87223 1.20026 1.00370 0.97633 0.97296 1.20553 0.93968 0.92989 0.93537 1.98364 1.54929 1.50527 1.98746 1.43431 1.39262 1.35165 1.10407 1.20706 0.77310 0.78112 0.91250 1.90802 1.50483 1.39176 1.60996 1.21156 1.01973 0.99726 0.91980 0.93032 0.94394 0.88824 0.91599 0.95042 0.88871 0.92129 0.91953 0.83665 0.81553 0.73335 0.84083 0.83762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 1.99 16 2 O -0.40 -15.96 10.44 -148.98 -1.56 -17.51 16 3 C 0.06 2.52 6.24 71.98 0.45 2.97 16 4 C 0.12 5.48 5.32 86.38 0.46 5.94 16 5 N -0.43 -20.51 2.47 -639.27 -1.58 -22.09 16 6 C -0.33 -15.38 6.37 84.09 0.54 -14.85 16 7 H 0.09 4.12 6.54 -2.91 -0.02 4.10 16 8 C 0.02 0.86 4.91 84.95 0.42 1.28 16 9 N -0.89 -44.38 11.58 21.67 0.25 -44.13 16 10 Si 0.96 38.07 29.60 68.60 2.03 40.10 16 11 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 12 H -0.28 -10.49 7.11 99.48 0.71 -9.78 16 13 H -0.29 -11.68 7.11 99.48 0.71 -10.97 16 14 C 0.50 23.62 6.82 86.66 0.59 24.21 16 15 O -0.61 -31.33 15.20 -4.13 -0.06 -31.39 16 16 C -0.13 -4.99 5.21 -20.03 -0.10 -5.10 16 17 C 0.00 -0.16 7.80 22.44 0.17 0.02 16 18 C -0.15 -4.10 6.33 -19.71 -0.12 -4.23 16 19 C 0.17 4.02 7.11 38.57 0.27 4.30 16 20 C -0.13 -3.36 9.83 22.46 0.22 -3.14 16 21 C 0.02 0.61 6.32 22.54 0.14 0.76 16 22 Cl -0.05 -1.88 26.97 -2.72 -0.07 -1.95 16 23 N -0.64 -12.74 5.85 -303.12 -1.77 -14.52 16 24 C 0.54 12.61 8.71 87.95 0.77 13.37 16 25 O -0.54 -15.83 18.03 -3.04 -0.05 -15.88 16 26 C -0.11 -2.38 6.88 29.48 0.20 -2.18 16 27 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 4.64 5.66 -2.38 -0.01 4.63 16 33 H 0.06 2.88 7.52 -2.39 -0.02 2.86 16 34 H 0.27 12.85 8.31 -92.71 -0.77 12.08 16 35 H 0.15 5.63 6.50 -2.91 -0.02 5.61 16 36 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 37 H 0.43 6.14 8.96 -92.71 -0.83 5.31 16 38 H 0.14 2.73 8.14 -2.39 -0.02 2.71 16 39 H 0.14 2.64 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -63.63 348.87 2.72 -60.90 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.29 Total: 21.13 kcal Atomic # 6 Polarization: 20.08 SS G_CDS: 5.25 Total: 25.34 kcal Atomic # 7 Polarization: -77.64 SS G_CDS: -3.10 Total: -80.74 kcal Atomic # 8 Polarization: -63.11 SS G_CDS: -1.67 Total: -64.78 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -0.07 Total: -1.95 kcal Total: -63.63 2.72 -60.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344520249.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.983 kcal (2) G-P(sol) polarization free energy of solvation -63.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds