Wall clock time and date at job start Tue Mar 31 2020 21:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00398 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00220 * 3 2 1 7 7 C 1.38817 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 180.27450 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08994 * 109.47052 * 35.00019 * 10 9 7 12 12 C 1.53006 * 109.46692 * 274.99780 * 10 9 7 13 13 O 1.42900 * 109.47466 * 294.99832 * 12 10 9 14 14 C 1.52995 * 109.47024 * 155.00126 * 10 9 7 15 15 N 1.46500 * 109.47361 * 304.99744 * 14 10 9 16 16 C 1.34770 * 120.00423 * 180.02562 * 15 14 10 17 17 O 1.21659 * 119.99985 * 359.97438 * 16 15 14 18 18 C 1.46944 * 120.00381 * 180.02562 * 16 15 14 19 19 C 1.33697 * 124.66463 * 180.02562 * 18 16 15 20 20 C 1.40365 * 115.57707 * 179.97438 * 19 18 16 21 21 C 1.40047 * 112.59164 * 359.97438 * 20 19 18 22 22 C 1.39848 * 119.95480 * 180.02562 * 21 20 19 23 23 C 1.37432 * 120.38516 * 0.04433 * 22 21 20 24 24 C 1.38874 * 120.22705 * 359.93557 * 23 22 21 25 25 C 1.37210 * 120.51881 * 0.03946 * 24 23 22 26 26 F 1.35101 * 119.84270 * 179.97438 * 25 24 23 27 27 S 1.75483 * 124.65869 * 359.69706 * 18 16 15 28 28 H 0.97000 * 120.00553 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 30 30 H 1.08997 * 109.47191 * 55.00866 * 12 10 9 31 31 H 1.09004 * 109.46584 * 175.00049 * 12 10 9 32 32 H 0.96700 * 113.99900 * 180.02562 * 13 12 10 33 33 H 1.09005 * 109.47349 * 64.99828 * 14 10 9 34 34 H 1.09002 * 109.47351 * 184.99998 * 14 10 9 35 35 H 0.96998 * 119.99598 * 0.02562 * 15 14 10 36 36 H 1.07997 * 122.21187 * 359.94692 * 19 18 16 37 37 H 1.08002 * 119.80125 * 180.02562 * 22 21 20 38 38 H 1.08000 * 119.88380 * 179.97438 * 23 22 21 39 39 H 1.07994 * 119.74437 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0051 10 6 4.1120 -2.4709 0.0107 11 1 3.5671 -3.2076 -0.5795 12 6 4.2522 -2.9725 1.4494 13 8 5.0653 -2.0633 2.1938 14 6 5.5017 -2.2601 -0.5935 15 7 5.3698 -1.6677 -1.9269 16 6 6.4706 -1.3920 -2.6538 17 8 7.5741 -1.6346 -2.2025 18 6 6.3383 -0.7972 -3.9910 19 6 7.3642 -0.4871 -4.7902 20 6 7.0188 0.0729 -6.0301 21 6 5.6340 0.2014 -6.1952 22 6 5.1191 0.7423 -7.3776 23 6 5.9644 1.1490 -8.3819 24 6 7.3395 1.0274 -8.2304 25 6 7.8699 0.5004 -7.0799 26 9 9.2096 0.3879 -6.9473 27 16 4.8116 -0.4040 -4.7616 28 1 -0.4851 0.8400 0.0004 29 1 3.8646 -0.3621 0.0055 30 1 3.2660 -3.0381 1.9090 31 1 4.7180 -3.9580 1.4468 32 1 5.1975 -2.3192 3.1169 33 1 6.0783 -1.5915 0.0457 34 1 6.0135 -3.2194 -0.6713 35 1 4.4900 -1.4739 -2.2866 36 1 8.3909 -0.6559 -4.5008 37 1 4.0508 0.8406 -7.5022 38 1 5.5580 1.5652 -9.2919 39 1 7.9966 1.3499 -9.0245 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571446292.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:22 Heat of formation + Delta-G solvation = -67.922472 kcal Electronic energy + Delta-G solvation = -25949.794021 eV Core-core repulsion = 21898.824278 eV Total energy + Delta-G solvation = -4050.969743 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.089 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.22336 -40.03453 -39.34088 -37.35028 -35.56589 -35.04528 -33.67849 -31.64825 -30.88831 -30.04163 -28.85597 -25.99767 -24.47841 -23.56473 -23.15566 -21.52746 -20.39417 -19.96993 -18.91858 -17.94650 -17.39160 -16.93107 -16.66380 -16.34806 -15.99971 -15.84397 -15.50103 -15.26227 -14.72042 -14.65062 -14.35260 -13.80787 -13.63596 -13.53809 -13.42485 -13.21708 -13.08979 -12.89221 -12.44593 -12.03124 -11.97477 -11.69284 -11.43892 -11.06246 -11.02569 -10.90886 -10.76312 -10.17806 -10.03766 -9.86699 -9.68647 -9.50942 -9.08012 -9.02861 -8.79729 -7.97891 -7.40204 -5.87011 -3.23929 -0.02324 0.68702 1.12392 1.58231 1.65085 3.03062 3.17352 3.27009 3.33372 3.41185 3.42935 3.84191 4.25651 4.40559 4.52340 4.57425 4.76547 4.83291 4.86937 5.13920 5.17507 5.26352 5.30376 5.42264 5.56193 5.58387 5.73613 5.80482 5.85319 5.87459 5.88942 5.89178 6.12762 6.32287 6.39115 6.52977 6.61018 7.58938 7.85722 8.07283 8.20849 8.31679 9.09119 9.81895 10.01467 11.30471 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.013180 B = 0.003436 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.978137 B = 8146.711926 C = 9619.919367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.014 3.986 3 Si 0.875 3.125 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.273 1.273 7 C -0.253 4.253 8 H 0.092 0.908 9 N -0.739 5.739 10 C 0.170 3.830 11 H 0.076 0.924 12 C 0.060 3.940 13 O -0.565 6.565 14 C 0.115 3.885 15 N -0.709 5.709 16 C 0.582 3.418 17 O -0.532 6.532 18 C -0.216 4.216 19 C -0.046 4.046 20 C -0.116 4.116 21 C -0.114 4.114 22 C -0.094 4.094 23 C -0.069 4.069 24 C -0.159 4.159 25 C 0.146 3.854 26 F -0.131 7.131 27 S 0.168 5.832 28 H 0.261 0.739 29 H 0.366 0.634 30 H 0.055 0.945 31 H 0.032 0.968 32 H 0.367 0.633 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.408 0.592 36 H 0.157 0.843 37 H 0.138 0.862 38 H 0.143 0.857 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.472 -1.403 -14.780 19.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.183 4.183 3 Si 0.705 3.295 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.199 1.199 7 C -0.382 4.382 8 H 0.109 0.891 9 N -0.383 5.383 10 C 0.060 3.940 11 H 0.094 0.906 12 C -0.022 4.022 13 O -0.369 6.369 14 C -0.009 4.009 15 N -0.360 5.360 16 C 0.367 3.633 17 O -0.411 6.411 18 C -0.334 4.334 19 C -0.078 4.078 20 C -0.126 4.126 21 C -0.231 4.231 22 C -0.116 4.116 23 C -0.091 4.091 24 C -0.180 4.180 25 C 0.125 3.875 26 F -0.109 7.109 27 S 0.437 5.563 28 H 0.071 0.929 29 H 0.199 0.801 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.212 0.788 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.244 0.756 36 H 0.175 0.825 37 H 0.156 0.844 38 H 0.160 0.840 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 11.486 -1.540 -14.440 18.515 hybrid contribution 1.674 1.144 0.154 2.033 sum 13.160 -0.396 -14.286 19.428 Atomic orbital electron populations 1.69691 1.05106 1.26009 1.56785 1.24617 0.95119 0.97119 1.01449 0.86687 0.79677 0.85096 0.78085 1.20783 1.21639 1.19919 1.19043 0.80334 0.94748 1.44077 0.89068 1.42762 1.03969 1.01765 1.89761 1.20588 0.90254 0.90726 0.92439 0.90605 1.22983 0.94014 0.90406 0.94761 1.86522 1.72507 1.52000 1.25830 1.21709 0.98801 0.98643 0.81751 1.45928 1.08783 1.62931 1.18337 1.16990 0.84980 0.78415 0.82930 1.90810 1.25627 1.53649 1.71033 1.23831 0.97776 1.11286 1.00556 1.20066 1.01027 0.95944 0.90769 1.18108 0.92533 1.06313 0.95597 1.22979 0.95662 1.04405 1.00039 1.20575 1.00739 0.99253 0.91066 1.20914 0.91941 0.97565 0.98706 1.20914 0.96684 1.03377 0.97067 1.17577 0.76497 0.99461 0.93996 1.91518 1.29742 1.93567 1.96094 1.84749 1.04500 1.61158 1.05929 0.92933 0.80069 0.92648 0.95018 0.78805 0.90145 0.91156 0.75576 0.82513 0.84420 0.83964 0.84005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.96 13.97 55.49 0.78 -27.18 16 2 C 0.01 0.38 5.50 -17.43 -0.10 0.29 16 3 Si 0.87 21.68 27.74 -169.99 -4.72 16.96 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.27 -6.67 6.51 56.52 0.37 -6.30 16 7 C -0.25 -6.64 10.41 -15.06 -0.16 -6.79 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 9 N -0.74 -16.45 4.31 -53.42 -0.23 -16.68 16 10 C 0.17 3.05 2.84 -67.93 -0.19 2.86 16 11 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 12 C 0.06 0.97 6.86 37.16 0.25 1.22 16 13 O -0.56 -9.33 12.64 -35.23 -0.45 -9.77 16 14 C 0.11 1.92 5.12 -4.04 -0.02 1.90 16 15 N -0.71 -11.84 5.38 -61.54 -0.33 -12.17 16 16 C 0.58 9.92 7.79 -12.74 -0.10 9.82 16 17 O -0.53 -10.31 16.72 5.23 0.09 -10.23 16 18 C -0.22 -3.21 6.32 -37.65 -0.24 -3.45 16 19 C -0.05 -0.64 9.71 -40.37 -0.39 -1.03 16 20 C -0.12 -1.45 5.87 -107.08 -0.63 -2.08 16 21 C -0.11 -1.35 6.49 -38.30 -0.25 -1.60 16 22 C -0.09 -0.85 10.06 -39.27 -0.40 -1.25 16 23 C -0.07 -0.51 10.03 -39.64 -0.40 -0.90 16 24 C -0.16 -1.31 9.96 -39.72 -0.40 -1.71 16 25 C 0.15 1.60 7.37 -38.61 -0.28 1.32 16 26 F -0.13 -1.51 17.19 2.25 0.04 -1.47 16 27 S 0.17 2.23 22.26 -107.50 -2.39 -0.16 16 28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.37 8.50 5.66 -40.82 -0.23 8.27 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.37 4.28 9.12 45.56 0.42 4.69 16 33 H 0.08 1.49 7.39 -51.93 -0.38 1.10 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.41 6.82 7.18 -40.82 -0.29 6.52 16 36 H 0.16 2.11 7.96 -52.49 -0.42 1.70 16 37 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 38 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 355.61 15.07 5.36 5.36 Total: -1.00 -33.03 355.61 -8.60 -41.63 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -3.46 Total: 15.12 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -3.29 Total: -1.41 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: 0.21 Total: -56.03 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.36 Total: -20.00 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.72 Total: 16.96 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.39 Total: -0.16 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.03 -8.60 -41.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571446292.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.293 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds