Wall clock time and date at job start Tue Mar 31 2020 21:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00398 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00220 * 3 2 1 7 7 C 1.38817 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 180.27450 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08994 * 109.47052 * 35.00019 * 10 9 7 12 12 C 1.53006 * 109.46692 * 274.99780 * 10 9 7 13 13 O 1.42900 * 109.47466 * 294.99832 * 12 10 9 14 14 C 1.52995 * 109.47024 * 155.00126 * 10 9 7 15 15 N 1.46500 * 109.47361 * 304.99744 * 14 10 9 16 16 C 1.34770 * 120.00423 * 180.02562 * 15 14 10 17 17 O 1.21659 * 119.99985 * 359.97438 * 16 15 14 18 18 C 1.46944 * 120.00381 * 180.02562 * 16 15 14 19 19 C 1.33697 * 124.66463 * 180.02562 * 18 16 15 20 20 C 1.40365 * 115.57707 * 179.97438 * 19 18 16 21 21 C 1.40047 * 112.59164 * 359.97438 * 20 19 18 22 22 C 1.39848 * 119.95480 * 180.02562 * 21 20 19 23 23 C 1.37432 * 120.38516 * 0.04433 * 22 21 20 24 24 C 1.38874 * 120.22705 * 359.93557 * 23 22 21 25 25 C 1.37210 * 120.51881 * 0.03946 * 24 23 22 26 26 F 1.35101 * 119.84270 * 179.97438 * 25 24 23 27 27 S 1.75483 * 124.65869 * 359.69706 * 18 16 15 28 28 H 0.97000 * 120.00553 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 30 30 H 1.08997 * 109.47191 * 55.00866 * 12 10 9 31 31 H 1.09004 * 109.46584 * 175.00049 * 12 10 9 32 32 H 0.96700 * 113.99900 * 180.02562 * 13 12 10 33 33 H 1.09005 * 109.47349 * 64.99828 * 14 10 9 34 34 H 1.09002 * 109.47351 * 184.99998 * 14 10 9 35 35 H 0.96998 * 119.99598 * 0.02562 * 15 14 10 36 36 H 1.07997 * 122.21187 * 359.94692 * 19 18 16 37 37 H 1.08002 * 119.80125 * 180.02562 * 22 21 20 38 38 H 1.08000 * 119.88380 * 179.97438 * 23 22 21 39 39 H 1.07994 * 119.74437 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0051 10 6 4.1120 -2.4709 0.0107 11 1 3.5671 -3.2076 -0.5795 12 6 4.2522 -2.9725 1.4494 13 8 5.0653 -2.0633 2.1938 14 6 5.5017 -2.2601 -0.5935 15 7 5.3698 -1.6677 -1.9269 16 6 6.4706 -1.3920 -2.6538 17 8 7.5741 -1.6346 -2.2025 18 6 6.3383 -0.7972 -3.9910 19 6 7.3642 -0.4871 -4.7902 20 6 7.0188 0.0729 -6.0301 21 6 5.6340 0.2014 -6.1952 22 6 5.1191 0.7423 -7.3776 23 6 5.9644 1.1490 -8.3819 24 6 7.3395 1.0274 -8.2304 25 6 7.8699 0.5004 -7.0799 26 9 9.2096 0.3879 -6.9473 27 16 4.8116 -0.4040 -4.7616 28 1 -0.4851 0.8400 0.0004 29 1 3.8646 -0.3621 0.0055 30 1 3.2660 -3.0381 1.9090 31 1 4.7180 -3.9580 1.4468 32 1 5.1975 -2.3192 3.1169 33 1 6.0783 -1.5915 0.0457 34 1 6.0135 -3.2194 -0.6713 35 1 4.4900 -1.4739 -2.2866 36 1 8.3909 -0.6559 -4.5008 37 1 4.0508 0.8406 -7.5022 38 1 5.5580 1.5652 -9.2919 39 1 7.9966 1.3499 -9.0245 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571446292.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:22 Heat of formation + Delta-G solvation = -92.403243 kcal Electronic energy + Delta-G solvation = -25950.855587 eV Core-core repulsion = 21898.824278 eV Total energy + Delta-G solvation = -4052.031309 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.089 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.05683 -41.17207 -40.37143 -38.77515 -36.60461 -36.33751 -35.36577 -33.48124 -31.66738 -31.22373 -30.30224 -27.21296 -25.55416 -25.20691 -24.24495 -22.51444 -21.83631 -21.19139 -20.09698 -19.61936 -18.40430 -18.31972 -17.69878 -17.39822 -16.94381 -16.87158 -16.72654 -16.39166 -16.30099 -15.92911 -15.47260 -15.13640 -15.03168 -14.73345 -14.62694 -14.41328 -14.30734 -14.18586 -14.10673 -13.24048 -12.89150 -12.81593 -12.75780 -12.67076 -12.42353 -12.31403 -11.97928 -11.89056 -11.80839 -11.43032 -11.04336 -10.77287 -10.72888 -10.31343 -9.79924 -9.35663 -8.88339 -8.02269 -5.34839 -0.96525 -0.06259 0.16401 0.60292 0.69604 1.36050 1.39654 1.44771 1.86313 1.93973 2.41094 2.46863 3.05549 3.28284 3.33014 3.44370 3.61639 3.67290 3.77960 3.81861 3.88058 4.19802 4.32237 4.37078 4.48136 4.49686 4.56624 4.61488 4.74235 4.85155 4.93422 5.01017 5.06986 5.11100 5.21678 5.25143 5.69674 5.76831 6.21001 6.25466 6.87703 7.01667 7.07221 7.80977 7.99891 9.18545 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.013180 B = 0.003436 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.978137 B = 8146.711926 C = 9619.919367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.047 4.047 3 Si 0.932 3.068 4 H -0.273 1.273 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.223 4.223 8 H 0.071 0.929 9 N -0.742 5.742 10 C 0.164 3.836 11 H 0.084 0.916 12 C 0.066 3.934 13 O -0.584 6.584 14 C 0.125 3.875 15 N -0.709 5.709 16 C 0.583 3.417 17 O -0.564 6.564 18 C -0.243 4.243 19 C -0.037 4.037 20 C -0.141 4.141 21 C -0.115 4.115 22 C -0.101 4.101 23 C -0.046 4.046 24 C -0.145 4.145 25 C 0.128 3.872 26 F -0.139 7.139 27 S 0.149 5.851 28 H 0.257 0.743 29 H 0.362 0.638 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.388 0.612 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.408 0.592 36 H 0.152 0.848 37 H 0.159 0.841 38 H 0.188 0.812 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.642 -0.751 -17.220 21.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.239 4.239 3 Si 0.761 3.239 4 H -0.199 1.199 5 H -0.225 1.225 6 H -0.194 1.194 7 C -0.354 4.354 8 H 0.089 0.911 9 N -0.385 5.385 10 C 0.056 3.944 11 H 0.102 0.898 12 C -0.014 4.014 13 O -0.391 6.391 14 C 0.001 3.999 15 N -0.359 5.359 16 C 0.370 3.630 17 O -0.445 6.445 18 C -0.361 4.361 19 C -0.070 4.070 20 C -0.150 4.150 21 C -0.232 4.232 22 C -0.124 4.124 23 C -0.067 4.067 24 C -0.166 4.166 25 C 0.107 3.893 26 F -0.117 7.117 27 S 0.417 5.583 28 H 0.066 0.934 29 H 0.195 0.805 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.237 0.763 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.244 0.756 36 H 0.169 0.831 37 H 0.177 0.823 38 H 0.205 0.795 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 12.705 -0.927 -16.864 21.134 hybrid contribution 1.397 0.892 0.752 1.820 sum 14.102 -0.035 -16.111 21.411 Atomic orbital electron populations 1.69828 1.06674 1.26397 1.59750 1.25204 0.95703 1.00102 1.02914 0.85760 0.78384 0.81462 0.78322 1.19861 1.22543 1.19402 1.19026 0.81981 0.93629 1.40766 0.91136 1.42751 1.02592 1.03336 1.89865 1.20857 0.90470 0.88988 0.94124 0.89825 1.22788 0.93710 0.92018 0.92929 1.86467 1.72298 1.52677 1.27691 1.21597 0.97703 0.99180 0.81423 1.45927 1.08772 1.62914 1.18297 1.17243 0.84429 0.77790 0.83563 1.90776 1.26528 1.55164 1.72024 1.23567 0.98944 1.13518 1.00102 1.20190 1.00559 0.94904 0.91352 1.18190 0.93392 1.07711 0.95696 1.23127 0.95096 1.04762 1.00260 1.21006 1.02367 0.98726 0.90293 1.21477 0.91141 0.94865 0.99247 1.21392 0.97748 1.01077 0.96385 1.17862 0.76151 1.00608 0.94718 1.91498 1.30264 1.93762 1.96214 1.84637 1.04099 1.62230 1.07329 0.93390 0.80518 0.94427 0.91068 0.76304 0.91724 0.89201 0.75593 0.83087 0.82318 0.79512 0.80831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.06 13.97 21.65 0.30 -59.76 16 2 C -0.05 -2.65 5.50 84.86 0.47 -2.19 16 3 Si 0.93 45.32 27.74 68.60 1.90 47.22 16 4 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 5 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 6 H -0.27 -12.67 6.51 99.48 0.65 -12.02 16 7 C -0.22 -11.83 10.41 84.04 0.87 -10.96 16 8 H 0.07 4.00 8.06 -2.91 -0.02 3.98 16 9 N -0.74 -32.81 4.31 -322.93 -1.39 -34.21 16 10 C 0.16 5.74 2.84 44.99 0.13 5.87 16 11 H 0.08 2.81 8.08 -2.39 -0.02 2.79 16 12 C 0.07 2.04 6.86 71.98 0.49 2.53 16 13 O -0.58 -18.37 12.64 -148.98 -1.88 -20.25 16 14 C 0.12 4.09 5.12 86.38 0.44 4.53 16 15 N -0.71 -23.81 5.38 -466.84 -2.51 -26.32 16 16 C 0.58 20.31 7.79 86.52 0.67 20.98 16 17 O -0.56 -22.33 16.72 -4.22 -0.07 -22.40 16 18 C -0.24 -7.42 6.32 23.52 0.15 -7.27 16 19 C -0.04 -1.05 9.71 21.76 0.21 -0.84 16 20 C -0.14 -3.45 5.87 -21.45 -0.13 -3.57 16 21 C -0.12 -2.59 6.49 23.10 0.15 -2.44 16 22 C -0.10 -1.51 10.06 22.47 0.23 -1.28 16 23 C -0.05 -0.44 10.03 22.23 0.22 -0.22 16 24 C -0.15 -1.80 9.96 22.18 0.22 -1.58 16 25 C 0.13 2.58 7.37 22.90 0.17 2.74 16 26 F -0.14 -3.05 17.19 44.97 0.77 -2.28 16 27 S 0.15 3.96 22.26 -56.49 -1.26 2.70 16 28 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 29 H 0.36 16.63 5.66 -92.71 -0.52 16.11 16 30 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.39 8.31 9.12 -74.06 -0.68 7.64 16 33 H 0.06 2.36 7.39 -2.38 -0.02 2.34 16 34 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.41 13.77 7.18 -92.71 -0.67 13.10 16 36 H 0.15 4.28 7.96 -2.91 -0.02 4.26 16 37 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 38 H 0.19 0.23 8.06 -2.91 -0.02 0.21 16 39 H 0.17 1.08 8.06 -2.91 -0.02 1.05 16 Total: -1.00 -73.43 355.61 -0.62 -74.06 By element: Atomic # 1 Polarization: 35.72 SS G_CDS: -0.79 Total: 34.93 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 4.30 Total: 6.30 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -3.60 Total: -120.28 kcal Atomic # 8 Polarization: -40.70 SS G_CDS: -1.95 Total: -42.65 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.77 Total: -2.28 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.90 Total: 47.22 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -1.26 Total: 2.70 kcal Total: -73.43 -0.62 -74.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571446292.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.347 kcal (2) G-P(sol) polarization free energy of solvation -73.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds