Wall clock time and date at job start Tue Mar 31 2020 20:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35640 * 119.09429 * 2 1 4 4 C 1.41142 * 119.59587 * 180.25934 * 3 2 1 5 5 N 1.32063 * 134.67788 * 179.72560 * 4 3 2 6 6 N 1.39954 * 108.96399 * 179.97438 * 5 4 3 7 7 H 0.96996 * 125.02628 * 180.02562 * 6 5 4 8 8 C 1.33993 * 109.95315 * 0.02562 * 6 5 4 9 9 C 1.38247 * 107.90892 * 0.02562 * 8 6 5 10 10 C 1.41122 * 134.82365 * 180.02562 * 9 8 6 11 11 C 1.35655 * 119.53787 * 179.97438 * 10 9 8 12 12 S 1.76200 * 119.13514 * 179.97438 * 11 10 9 13 13 O 1.42106 * 106.39996 * 131.47335 * 12 11 10 14 14 O 1.42101 * 106.40208 * 358.55618 * 12 11 10 15 15 N 1.65600 * 107.21962 * 245.01250 * 12 11 10 16 16 C 1.46496 * 119.99976 * 64.19221 * 15 12 11 17 17 C 1.50696 * 109.47530 * 163.99614 * 16 15 12 18 18 O 1.21297 * 119.99811 * 0.02562 * 17 16 15 19 19 N 1.34771 * 120.00412 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00286 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00224 * 0.02562 * 20 19 17 22 22 C 1.38955 * 120.00299 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99731 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99994 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47603 * 60.00010 * 24 22 20 26 26 H 1.48504 * 109.46916 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47065 * 299.99709 * 24 22 20 28 28 H 1.08991 * 109.47608 * 264.74948 * 1 2 3 29 29 H 1.09000 * 109.46898 * 24.75270 * 1 2 3 30 30 H 1.09004 * 109.46639 * 144.74880 * 1 2 3 31 31 H 1.08004 * 120.19663 * 359.97438 * 3 2 1 32 32 H 1.07998 * 126.04289 * 179.97438 * 8 6 5 33 33 H 1.07998 * 120.23021 * 0.02562 * 10 9 8 34 34 H 0.97000 * 119.99834 * 244.18999 * 15 12 11 35 35 H 1.09005 * 109.46920 * 284.00090 * 16 15 12 36 36 H 1.08997 * 109.47325 * 43.99351 * 16 15 12 37 37 H 0.97001 * 120.00148 * 0.02562 * 19 17 16 38 38 H 0.96998 * 119.99599 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1666 1.1853 0.0000 4 6 3.5779 1.1976 -0.0056 5 7 4.4982 2.1448 -0.0116 6 7 5.7644 1.5486 -0.0144 7 1 6.6064 2.0301 -0.0185 8 6 5.6416 0.2143 -0.0107 9 6 4.2927 -0.0884 -0.0059 10 6 3.5413 -1.2829 -0.0002 11 6 2.1862 -1.2205 0.0040 12 16 1.2584 -2.7185 0.0104 13 8 0.2829 -2.5819 1.0347 14 8 2.2056 -3.7773 -0.0246 15 7 0.4277 -2.7868 -1.4205 16 6 1.1574 -2.8786 -2.6875 17 6 0.2154 -3.3166 -3.7792 18 8 -0.9510 -3.5305 -3.5241 19 7 0.6686 -3.4696 -5.0391 20 6 -0.1883 -3.8685 -6.0322 21 1 -1.2266 -4.0598 -5.8049 22 6 0.2791 -4.0268 -7.3312 23 7 1.5427 -3.7945 -7.6076 24 14 -0.8886 -4.5697 -8.6843 25 1 -1.9875 -3.5797 -8.8166 26 1 -0.1487 -4.6633 -9.9685 27 1 -1.4577 -5.8984 -8.3434 28 1 -0.3634 -0.0940 1.0232 29 1 -0.3633 0.9333 -0.4303 30 1 -0.3633 -0.8393 -0.5932 31 1 1.6150 2.1138 -0.0004 32 1 6.4529 -0.4985 -0.0121 33 1 4.0416 -2.2400 0.0016 34 1 -0.5421 -2.7660 -1.4197 35 1 1.5752 -1.9034 -2.9376 36 1 1.9639 -3.6053 -2.5904 37 1 1.6013 -3.2982 -5.2433 38 1 1.8690 -3.9054 -8.5143 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663227700.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:25 Heat of formation + Delta-G solvation = -13.627204 kcal Electronic energy + Delta-G solvation = -26578.911567 eV Core-core repulsion = 22550.216205 eV Total energy + Delta-G solvation = -4028.695361 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.088 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.65091 -38.42140 -38.01979 -37.12440 -35.72165 -34.68008 -33.71644 -32.77465 -32.25681 -31.33583 -29.43235 -27.70884 -27.07146 -24.31241 -24.07350 -21.89460 -21.09547 -19.67126 -19.42464 -18.61154 -18.12067 -17.93653 -17.28961 -16.25867 -16.07931 -15.51962 -15.32413 -15.07284 -14.68451 -14.53481 -14.39738 -14.28003 -13.97937 -13.68608 -13.55208 -13.10437 -12.48405 -12.41171 -12.17841 -11.95012 -11.88958 -11.87014 -11.80519 -11.71705 -11.50777 -11.11763 -11.07523 -10.76897 -10.59804 -10.48848 -10.28333 -9.60340 -9.33188 -9.06547 -8.57161 -8.12496 -8.07279 -6.49519 -3.90955 0.12332 0.55473 1.22454 2.00599 2.26474 3.06372 3.15799 3.23042 3.27374 3.38847 3.74915 3.80079 3.93512 4.11999 4.19934 4.53591 4.62518 4.79405 4.88314 4.90089 4.99278 5.17444 5.22575 5.37110 5.49053 5.63652 5.66158 5.78964 5.84626 5.89787 5.98865 6.09688 6.24474 6.30885 6.50979 6.61710 7.18311 7.28292 7.48369 7.95800 8.48764 9.07768 9.42116 9.90941 10.67516 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.013347 B = 0.003168 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.354964 B = 8836.126822 C = 9881.419142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.032 3.968 3 C -0.124 4.124 4 C 0.140 3.860 5 N -0.313 5.313 6 N -0.425 5.425 7 H 0.446 0.554 8 C 0.119 3.881 9 C -0.239 4.239 10 C 0.093 3.907 11 C -0.704 4.704 12 S 2.704 3.296 13 O -0.957 6.957 14 O -0.965 6.965 15 N -1.097 6.097 16 C 0.107 3.893 17 C 0.436 3.564 18 O -0.589 6.589 19 N -0.553 5.553 20 C -0.304 4.304 21 H 0.105 0.895 22 C 0.026 3.974 23 N -0.897 5.897 24 Si 0.933 3.067 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.273 1.273 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.135 0.865 32 H 0.197 0.803 33 H 0.150 0.850 34 H 0.427 0.573 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.395 0.605 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.823 9.564 14.693 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.026 3.974 3 C -0.146 4.146 4 C -0.015 4.015 5 N -0.140 5.140 6 N -0.123 5.123 7 H 0.291 0.709 8 C -0.041 4.041 9 C -0.250 4.250 10 C 0.071 3.929 11 C -0.792 4.792 12 S 2.793 3.207 13 O -0.947 6.947 14 O -0.955 6.955 15 N -0.862 5.862 16 C -0.024 4.024 17 C 0.220 3.780 18 O -0.474 6.474 19 N -0.188 5.188 20 C -0.433 4.433 21 H 0.123 0.877 22 C -0.177 4.177 23 N -0.538 5.538 24 Si 0.760 3.240 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.198 1.198 28 H 0.115 0.885 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.153 0.847 32 H 0.214 0.786 33 H 0.168 0.832 34 H 0.267 0.733 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.229 0.771 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.542 10.127 15.301 21.162 hybrid contribution 0.515 0.032 -1.267 1.368 sum 11.057 10.159 14.034 20.553 Atomic orbital electron populations 1.21324 0.90049 1.04397 1.04543 1.18778 0.95744 0.90728 0.92123 1.19674 0.88819 0.98234 1.07898 1.21028 0.94752 0.90199 0.95532 1.77790 0.86917 1.18035 1.31293 1.46465 1.09392 1.04989 1.51428 0.70915 1.22953 0.97840 0.86615 0.96673 1.19694 0.92011 0.95301 1.17994 1.20290 0.91692 0.97163 0.83791 1.30204 1.06275 1.19541 1.23193 1.01579 0.73269 0.73545 0.72350 1.93595 1.59696 1.87044 1.54414 1.93555 1.63637 1.51857 1.86410 1.55148 1.19715 1.90871 1.20448 1.20930 0.95030 1.02135 0.84262 1.19618 0.88955 0.85650 0.83765 1.90509 1.17973 1.57001 1.81953 1.41802 1.12416 1.58446 1.06183 1.19687 0.94302 1.42438 0.86891 0.87725 1.25297 0.96602 0.97210 0.98589 1.69603 1.13857 1.48497 1.21827 0.85885 0.79564 0.79416 0.79172 1.19815 1.20931 1.19785 0.88534 0.89991 0.90758 0.84745 0.78641 0.83199 0.73315 0.90153 0.88740 0.77147 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.50 36.01 0.31 -1.36 16 2 C 0.03 0.40 5.83 -105.01 -0.61 -0.22 16 3 C -0.12 -1.53 9.65 -39.41 -0.38 -1.91 16 4 C 0.14 1.75 7.49 -83.06 -0.62 1.13 16 5 N -0.31 -3.66 12.70 33.25 0.42 -3.23 16 6 N -0.42 -3.01 7.18 30.84 0.22 -2.79 16 7 H 0.45 1.33 8.96 -182.71 -1.64 -0.31 16 8 C 0.12 0.79 12.08 -16.61 -0.20 0.59 16 9 C -0.24 -2.57 6.33 -105.19 -0.67 -3.24 16 10 C 0.09 1.05 9.56 -39.41 -0.38 0.67 16 11 C -0.70 -9.01 5.82 -39.97 -0.23 -9.24 16 12 S 2.70 38.97 4.92 -107.50 -0.53 38.44 16 13 O -0.96 -15.36 16.30 -57.17 -0.93 -16.29 16 14 O -0.96 -15.58 16.34 -57.17 -0.93 -16.51 16 15 N -1.10 -17.00 4.67 -11.66 -0.05 -17.05 16 16 C 0.11 1.77 6.70 -5.20 -0.03 1.74 16 17 C 0.44 9.74 7.85 -10.99 -0.09 9.65 16 18 O -0.59 -15.01 15.31 5.54 0.08 -14.92 16 19 N -0.55 -13.37 5.29 -10.97 -0.06 -13.43 16 20 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16 21 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 22 C 0.03 0.66 5.50 -17.46 -0.10 0.56 16 23 N -0.90 -23.57 13.05 55.50 0.72 -22.84 16 24 Si 0.93 20.44 29.55 -169.99 -5.02 15.42 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 28 H 0.10 1.05 7.93 -51.93 -0.41 0.64 16 29 H 0.08 0.77 7.99 -51.93 -0.41 0.35 16 30 H 0.07 0.89 5.17 -51.93 -0.27 0.62 16 31 H 0.13 1.40 8.02 -52.48 -0.42 0.98 16 32 H 0.20 0.35 8.06 -52.49 -0.42 -0.07 16 33 H 0.15 1.39 7.21 -52.49 -0.38 1.01 16 34 H 0.43 6.81 7.27 -34.47 -0.25 6.56 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.09 1.43 7.75 -51.93 -0.40 1.03 16 37 H 0.39 9.03 7.90 -40.82 -0.32 8.71 16 38 H 0.27 6.82 8.31 -40.82 -0.34 6.49 16 LS Contribution 341.47 15.07 5.15 5.15 Total: -1.00 -36.55 341.47 -8.94 -45.49 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -4.86 Total: 12.49 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -3.15 Total: -9.91 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: 1.26 Total: -59.35 kcal Atomic # 8 Polarization: -45.95 SS G_CDS: -1.78 Total: -47.73 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 38.97 SS G_CDS: -0.53 Total: 38.44 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.55 -8.94 -45.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663227700.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.860 kcal (2) G-P(sol) polarization free energy of solvation -36.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds