Wall clock time and date at job start Tue Mar 31 2020 20:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35640 * 119.09429 * 2 1 4 4 C 1.41142 * 119.59587 * 180.25934 * 3 2 1 5 5 N 1.32063 * 134.67788 * 179.72560 * 4 3 2 6 6 N 1.39954 * 108.96399 * 179.97438 * 5 4 3 7 7 H 0.96996 * 125.02628 * 180.02562 * 6 5 4 8 8 C 1.33993 * 109.95315 * 0.02562 * 6 5 4 9 9 C 1.38247 * 107.90892 * 0.02562 * 8 6 5 10 10 C 1.41122 * 134.82365 * 180.02562 * 9 8 6 11 11 C 1.35655 * 119.53787 * 179.97438 * 10 9 8 12 12 S 1.76200 * 119.13514 * 179.97438 * 11 10 9 13 13 O 1.42106 * 106.39996 * 131.47335 * 12 11 10 14 14 O 1.42101 * 106.40208 * 358.55618 * 12 11 10 15 15 N 1.65600 * 107.21962 * 245.01250 * 12 11 10 16 16 C 1.46496 * 119.99976 * 64.19221 * 15 12 11 17 17 C 1.50696 * 109.47530 * 163.99614 * 16 15 12 18 18 O 1.21297 * 119.99811 * 0.02562 * 17 16 15 19 19 N 1.34771 * 120.00412 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00286 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00224 * 0.02562 * 20 19 17 22 22 C 1.38955 * 120.00299 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99731 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99994 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47603 * 60.00010 * 24 22 20 26 26 H 1.48504 * 109.46916 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47065 * 299.99709 * 24 22 20 28 28 H 1.08991 * 109.47608 * 264.74948 * 1 2 3 29 29 H 1.09000 * 109.46898 * 24.75270 * 1 2 3 30 30 H 1.09004 * 109.46639 * 144.74880 * 1 2 3 31 31 H 1.08004 * 120.19663 * 359.97438 * 3 2 1 32 32 H 1.07998 * 126.04289 * 179.97438 * 8 6 5 33 33 H 1.07998 * 120.23021 * 0.02562 * 10 9 8 34 34 H 0.97000 * 119.99834 * 244.18999 * 15 12 11 35 35 H 1.09005 * 109.46920 * 284.00090 * 16 15 12 36 36 H 1.08997 * 109.47325 * 43.99351 * 16 15 12 37 37 H 0.97001 * 120.00148 * 0.02562 * 19 17 16 38 38 H 0.96998 * 119.99599 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1666 1.1853 0.0000 4 6 3.5779 1.1976 -0.0056 5 7 4.4982 2.1448 -0.0116 6 7 5.7644 1.5486 -0.0144 7 1 6.6064 2.0301 -0.0185 8 6 5.6416 0.2143 -0.0107 9 6 4.2927 -0.0884 -0.0059 10 6 3.5413 -1.2829 -0.0002 11 6 2.1862 -1.2205 0.0040 12 16 1.2584 -2.7185 0.0104 13 8 0.2829 -2.5819 1.0347 14 8 2.2056 -3.7773 -0.0246 15 7 0.4277 -2.7868 -1.4205 16 6 1.1574 -2.8786 -2.6875 17 6 0.2154 -3.3166 -3.7792 18 8 -0.9510 -3.5305 -3.5241 19 7 0.6686 -3.4696 -5.0391 20 6 -0.1883 -3.8685 -6.0322 21 1 -1.2266 -4.0598 -5.8049 22 6 0.2791 -4.0268 -7.3312 23 7 1.5427 -3.7945 -7.6076 24 14 -0.8886 -4.5697 -8.6843 25 1 -1.9875 -3.5797 -8.8166 26 1 -0.1487 -4.6633 -9.9685 27 1 -1.4577 -5.8984 -8.3434 28 1 -0.3634 -0.0940 1.0232 29 1 -0.3633 0.9333 -0.4303 30 1 -0.3633 -0.8393 -0.5932 31 1 1.6150 2.1138 -0.0004 32 1 6.4529 -0.4985 -0.0121 33 1 4.0416 -2.2400 0.0016 34 1 -0.5421 -2.7660 -1.4197 35 1 1.5752 -1.9034 -2.9376 36 1 1.9639 -3.6053 -2.5904 37 1 1.6013 -3.2982 -5.2433 38 1 1.8690 -3.9054 -8.5143 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663227700.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:24 Heat of formation + Delta-G solvation = -43.650439 kcal Electronic energy + Delta-G solvation = -26580.213472 eV Core-core repulsion = 22550.216205 eV Total energy + Delta-G solvation = -4029.997267 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.088 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.36848 -40.21474 -38.86149 -38.30552 -36.92758 -36.30853 -35.37405 -33.59920 -33.28686 -33.02428 -30.21063 -28.81235 -28.37347 -26.11941 -24.87225 -22.72231 -21.84280 -21.36594 -20.57289 -20.01884 -19.31903 -18.98929 -18.51287 -17.38925 -17.22325 -16.99408 -16.48384 -16.15880 -16.03100 -15.97328 -15.59950 -15.32235 -15.23849 -14.81401 -14.56020 -14.11880 -13.86477 -13.80371 -13.55954 -13.31809 -13.18019 -13.07081 -12.88657 -12.84750 -12.66575 -12.62522 -12.41549 -12.11087 -12.06693 -11.54745 -11.51307 -11.42736 -10.63573 -10.36005 -10.02463 -9.85459 -8.93893 -8.46144 -5.94929 -0.66497 -0.49838 0.33477 1.29711 1.41375 1.45131 1.55172 1.74549 1.94454 1.99987 2.32096 2.47567 2.77856 3.08973 3.16096 3.21524 3.53709 3.57780 3.92194 4.00332 4.07111 4.12835 4.31476 4.42031 4.44757 4.50781 4.55807 4.76210 4.78101 4.87165 5.02944 5.13759 5.27855 5.39965 5.43210 5.68906 5.93469 6.04882 6.15975 6.44821 6.56877 7.10907 7.52506 8.05414 8.70524 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.013347 B = 0.003168 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.354964 B = 8836.126822 C = 9881.419142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.025 3.975 3 C -0.141 4.141 4 C 0.119 3.881 5 N -0.351 5.351 6 N -0.410 5.410 7 H 0.465 0.535 8 C 0.162 3.838 9 C -0.272 4.272 10 C 0.105 3.895 11 C -0.723 4.723 12 S 2.721 3.279 13 O -0.979 6.979 14 O -0.983 6.983 15 N -1.103 6.103 16 C 0.116 3.884 17 C 0.436 3.564 18 O -0.624 6.624 19 N -0.563 5.563 20 C -0.337 4.337 21 H 0.083 0.917 22 C -0.008 4.008 23 N -0.915 5.915 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.273 1.273 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.141 0.859 32 H 0.254 0.746 33 H 0.171 0.829 34 H 0.424 0.576 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.400 0.600 38 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.405 9.920 14.659 22.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.020 3.980 3 C -0.163 4.163 4 C -0.036 4.036 5 N -0.179 5.179 6 N -0.109 5.109 7 H 0.314 0.686 8 C 0.000 4.000 9 C -0.283 4.283 10 C 0.083 3.917 11 C -0.814 4.814 12 S 2.814 3.186 13 O -0.969 6.969 14 O -0.974 6.974 15 N -0.865 5.865 16 C -0.014 4.014 17 C 0.222 3.778 18 O -0.511 6.511 19 N -0.200 5.200 20 C -0.466 4.466 21 H 0.101 0.899 22 C -0.209 4.209 23 N -0.556 5.556 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.198 1.198 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.084 0.916 31 H 0.159 0.841 32 H 0.270 0.730 33 H 0.188 0.812 34 H 0.263 0.737 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.235 0.765 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.145 10.489 15.274 22.718 hybrid contribution -0.104 0.004 -1.165 1.170 sum 13.041 10.493 14.109 21.892 Atomic orbital electron populations 1.21381 0.89979 1.04873 1.04530 1.18848 0.95975 0.90874 0.92352 1.19811 0.89455 0.98406 1.08591 1.21247 0.95103 0.91451 0.95806 1.77719 0.88353 1.18952 1.32842 1.46540 1.09078 1.05531 1.49789 0.68639 1.23824 0.97625 0.86831 0.91691 1.20012 0.93723 0.94386 1.20164 1.20570 0.91202 0.98384 0.81563 1.29780 1.06817 1.18059 1.26759 1.00830 0.72668 0.73658 0.71484 1.93561 1.60773 1.87581 1.55003 1.93518 1.63840 1.53467 1.86527 1.55187 1.19610 1.91381 1.20353 1.20917 0.93857 1.04085 0.82506 1.20564 0.89301 0.83704 0.84255 1.90485 1.20007 1.57958 1.82681 1.41841 1.12393 1.59169 1.06557 1.19668 0.94051 1.44489 0.88416 0.89945 1.26018 0.98123 0.96754 1.00007 1.69657 1.14797 1.48582 1.22525 0.85005 0.77795 0.78779 0.76871 1.19685 1.19583 1.19778 0.88568 0.88432 0.91622 0.84120 0.72982 0.81167 0.73749 0.87122 0.86765 0.76526 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.50 71.24 0.61 -2.89 16 2 C 0.03 0.62 5.83 -20.12 -0.12 0.50 16 3 C -0.14 -3.42 9.65 22.38 0.22 -3.21 16 4 C 0.12 2.83 7.49 42.16 0.32 3.14 16 5 N -0.35 -7.60 12.70 -48.71 -0.62 -8.22 16 6 N -0.41 -4.36 7.18 -56.34 -0.40 -4.77 16 7 H 0.46 0.97 8.96 -213.42 -1.91 -0.95 16 8 C 0.16 1.40 12.08 84.37 1.02 2.42 16 9 C -0.27 -5.08 6.33 -20.23 -0.13 -5.21 16 10 C 0.10 2.13 9.56 22.38 0.21 2.35 16 11 C -0.72 -17.83 5.82 22.02 0.13 -17.70 16 12 S 2.72 77.45 4.92 -56.49 -0.28 77.17 16 13 O -0.98 -31.82 16.30 -128.00 -2.09 -33.91 16 14 O -0.98 -30.75 16.34 -128.00 -2.09 -32.84 16 15 N -1.10 -34.07 4.67 -190.80 -0.89 -34.96 16 16 C 0.12 3.76 6.70 85.63 0.57 4.33 16 17 C 0.44 19.62 7.85 87.66 0.69 20.31 16 18 O -0.62 -32.58 15.31 -3.08 -0.05 -32.63 16 19 N -0.56 -27.51 5.29 -306.99 -1.62 -29.13 16 20 C -0.34 -18.42 9.68 84.04 0.81 -17.61 16 21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 22 C -0.01 -0.43 5.50 84.93 0.47 0.03 16 23 N -0.92 -47.60 13.05 21.67 0.28 -47.32 16 24 Si 0.99 41.68 29.55 68.60 2.03 43.70 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 26 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 27 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 28 H 0.10 2.17 7.93 -2.39 -0.02 2.16 16 29 H 0.10 1.85 7.99 -2.39 -0.02 1.83 16 30 H 0.07 1.61 5.17 -2.38 -0.01 1.60 16 31 H 0.14 3.00 8.02 -2.91 -0.02 2.98 16 32 H 0.25 -0.88 8.06 -2.91 -0.02 -0.91 16 33 H 0.17 2.62 7.21 -2.91 -0.02 2.60 16 34 H 0.42 13.87 7.27 -96.75 -0.70 13.17 16 35 H 0.11 2.94 8.14 -2.38 -0.02 2.92 16 36 H 0.11 3.27 7.75 -2.39 -0.02 3.25 16 37 H 0.40 18.31 7.90 -92.71 -0.73 17.58 16 38 H 0.28 13.62 8.31 -92.71 -0.77 12.85 16 Total: -1.00 -80.79 341.47 -3.11 -83.90 By element: Atomic # 1 Polarization: 34.70 SS G_CDS: -2.17 Total: 32.53 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: 4.80 Total: -13.52 kcal Atomic # 7 Polarization: -121.15 SS G_CDS: -3.25 Total: -124.40 kcal Atomic # 8 Polarization: -95.15 SS G_CDS: -4.22 Total: -99.37 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Atomic # 16 Polarization: 77.45 SS G_CDS: -0.28 Total: 77.17 kcal Total: -80.79 -3.11 -83.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663227700.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.247 kcal (2) G-P(sol) polarization free energy of solvation -80.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds