Wall clock time and date at job start Tue Mar 31 2020 20:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35699 * 116.99648 * 2 1 4 4 C 1.39031 * 119.90835 * 0.02562 * 3 2 1 5 5 C 1.37659 * 120.09315 * 179.97438 * 4 3 2 6 6 C 1.39816 * 119.90567 * 0.02562 * 5 4 3 7 7 C 1.47469 * 120.09262 * 179.97438 * 6 5 4 8 8 O 1.21503 * 119.99821 * 179.97438 * 7 6 5 9 9 O 1.34748 * 120.00180 * 359.97438 * 7 6 5 10 10 C 1.45194 * 117.00179 * 180.02562 * 9 7 6 11 11 C 1.50704 * 109.47256 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99537 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00090 * 179.97438 * 11 10 9 14 14 C 1.46492 * 119.99950 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47030 * 180.02562 * 14 13 11 16 16 H 1.08001 * 120.00277 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99941 * 180.02562 * 15 14 13 18 18 N 1.31508 * 119.99851 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99926 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47267 * 90.00312 * 19 17 15 21 21 H 1.48503 * 109.47104 * 210.00399 * 19 17 15 22 22 H 1.48505 * 109.47187 * 330.00287 * 19 17 15 23 23 C 1.39773 * 119.81400 * 359.97438 * 6 5 4 24 24 C 1.37701 * 119.90468 * 359.72700 * 23 6 5 25 25 N 1.48019 * 119.95193 * 180.27213 * 24 23 6 26 26 O 1.21796 * 120.00195 * 0.27470 * 25 24 23 27 27 O 1.21799 * 119.99901 * 180.27740 * 25 24 23 28 28 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47054 * 299.99671 * 1 2 3 30 30 H 1.09000 * 109.47187 * 59.99726 * 1 2 3 31 31 H 1.07993 * 119.95536 * 0.02562 * 4 3 2 32 32 H 1.07997 * 120.04943 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.47233 * 300.00068 * 10 9 7 34 34 H 1.08999 * 109.47266 * 59.99781 * 10 9 7 35 35 H 0.97002 * 120.00032 * 0.02562 * 13 11 10 36 36 H 1.08999 * 109.47770 * 300.00291 * 14 13 11 37 37 H 1.09007 * 109.46869 * 60.00501 * 14 13 11 38 38 H 0.96999 * 119.99922 * 179.97438 * 18 17 15 39 39 H 1.08003 * 120.04486 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2859 2.3739 0.0005 5 6 1.9068 3.6025 0.0011 6 6 3.3029 3.6779 0.0005 7 6 3.9724 4.9919 0.0005 8 8 5.1858 5.0555 0.0005 9 8 3.2385 6.1220 0.0005 10 6 3.9645 7.3795 0.0000 11 6 2.9851 8.5249 0.0007 12 8 1.7927 8.3032 0.0011 13 7 3.4344 9.7956 0.0008 14 6 2.4824 10.9090 0.0010 15 6 3.2359 12.2141 0.0005 16 1 4.3159 12.2142 -0.0003 17 6 2.5464 13.4083 0.0011 18 7 3.2040 14.5471 0.0001 19 14 0.6784 13.4082 0.0017 20 1 0.1839 13.4079 1.4019 21 1 0.1832 14.6208 -0.6979 22 1 0.1832 12.1958 -0.6985 23 6 4.0623 2.5045 0.0000 24 6 3.4332 1.2796 0.0057 25 7 4.2363 0.0363 0.0112 26 8 5.4528 0.0971 0.0158 27 8 3.6807 -1.0476 0.0111 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 0.2076 2.3147 0.0014 32 1 1.3164 4.5068 0.0019 33 1 4.5915 7.4374 0.8897 34 1 4.5908 7.4370 -0.8902 35 1 4.3881 9.9729 0.0001 36 1 1.8556 10.8515 -0.8890 37 1 1.8558 10.8512 0.8911 38 1 2.7190 15.3872 0.0001 39 1 5.1410 2.5584 0.0000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011341892.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:06 Heat of formation + Delta-G solvation = -125.089182 kcal Electronic energy + Delta-G solvation = -27619.523447 eV Core-core repulsion = 23110.949109 eV Total energy + Delta-G solvation = -4508.574338 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.55299 -41.21565 -40.56642 -39.10477 -38.22899 -36.71766 -36.63124 -34.49382 -32.90829 -32.51620 -31.64378 -29.68015 -28.43281 -27.39036 -26.76473 -24.56195 -23.13151 -22.30538 -21.51460 -20.27245 -19.98728 -19.00976 -18.68763 -17.89290 -17.87591 -17.79328 -16.92525 -16.82993 -16.66546 -16.57965 -15.91081 -15.40225 -15.25095 -14.97665 -14.68912 -14.35409 -13.84886 -13.77597 -13.36060 -13.22731 -12.95925 -12.67071 -12.46479 -12.27290 -12.23261 -11.98425 -11.78215 -11.39759 -11.33344 -11.15912 -11.05502 -11.01850 -10.85538 -10.38679 -10.07615 -9.62603 -9.49406 -9.44729 -8.89411 -8.38389 -6.30656 -4.34287 -0.57744 -0.12843 0.85895 0.97325 1.85602 1.98170 2.15609 2.77079 2.88722 3.19035 3.26186 3.32710 3.56130 3.67071 3.76291 4.09677 4.13421 4.21517 4.24236 4.37929 4.42916 4.70876 4.76046 4.82862 4.94754 5.00081 5.04908 5.08304 5.15043 5.27637 5.43925 5.93099 5.96406 6.23244 6.62799 6.91452 6.96899 7.22881 7.27465 7.39090 7.94588 8.31856 8.56564 8.70471 9.27797 10.81053 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.024672 B = 0.001924 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.594742 B =14550.939181 C =15659.772106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.276 6.276 3 C 0.226 3.774 4 C -0.224 4.224 5 C 0.033 3.967 6 C -0.159 4.159 7 C 0.515 3.485 8 O -0.497 6.497 9 O -0.324 6.324 10 C 0.050 3.950 11 C 0.503 3.497 12 O -0.538 6.538 13 N -0.697 5.697 14 C 0.223 3.777 15 C -0.548 4.548 16 H 0.081 0.919 17 C 0.079 3.921 18 N -0.889 5.889 19 Si 0.877 3.123 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.261 1.261 23 C 0.046 3.954 24 C -0.095 4.095 25 N 0.037 4.963 26 O -0.171 6.171 27 O -0.135 6.135 28 H 0.115 0.885 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.163 0.837 32 H 0.168 0.832 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.400 0.600 36 H 0.028 0.972 37 H 0.024 0.976 38 H 0.269 0.731 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.690 -28.083 -0.037 28.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.185 6.185 3 C 0.176 3.824 4 C -0.243 4.243 5 C 0.014 3.986 6 C -0.161 4.161 7 C 0.358 3.642 8 O -0.386 6.386 9 O -0.239 6.239 10 C -0.027 4.027 11 C 0.286 3.714 12 O -0.416 6.416 13 N -0.348 5.348 14 C 0.101 3.899 15 C -0.586 4.586 16 H 0.099 0.901 17 C -0.126 4.126 18 N -0.526 5.526 19 Si 0.704 3.296 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.185 1.185 23 C 0.027 3.973 24 C -0.180 4.180 25 N 0.557 4.443 26 O -0.381 6.381 27 O -0.355 6.355 28 H 0.134 0.866 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.180 0.820 32 H 0.186 0.814 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.234 0.766 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.079 0.921 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -5.506 -27.539 -0.042 28.084 hybrid contribution -0.320 0.239 0.021 0.400 sum -5.825 -27.299 -0.021 27.914 Atomic orbital electron populations 1.23446 0.76316 1.05777 1.02423 1.86396 1.23047 1.24250 1.84819 1.19004 0.89421 0.86740 0.87271 1.21375 1.01685 0.90379 1.10873 1.21874 0.93282 0.99154 0.84250 1.18785 0.93544 0.90176 1.13593 1.20591 0.85517 0.84622 0.73428 1.90904 1.14381 1.87816 1.45453 1.86541 1.39882 1.13881 1.83613 1.22918 0.94299 0.80119 1.05337 1.19868 0.89068 0.83979 0.78491 1.90693 1.16331 1.84642 1.49965 1.46075 1.11699 1.04786 1.72199 1.19567 0.89270 0.83976 0.97087 1.21058 0.95352 0.88308 1.53870 0.90085 1.24796 0.98879 0.95135 0.93775 1.69870 1.36213 0.97575 1.48925 0.86812 0.85389 0.78356 0.79091 1.19786 1.20803 1.18516 1.20926 1.02929 0.87568 0.85925 1.20239 0.88215 0.86029 1.23485 1.43186 1.01159 1.02080 0.97894 1.94575 0.95189 1.93846 1.54523 1.94590 1.74043 1.14649 1.52265 0.86643 0.91376 0.91368 0.81976 0.81448 0.87874 0.87866 0.76588 0.95389 0.95836 0.92123 0.80727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.81 101.05 0.99 1.03 16 2 O -0.28 -2.00 8.48 -40.98 -0.35 -2.35 16 3 C 0.23 1.75 6.68 -39.01 -0.26 1.49 16 4 C -0.22 -1.23 9.01 -39.50 -0.36 -1.59 16 5 C 0.03 0.23 9.61 -39.20 -0.38 -0.15 16 6 C -0.16 -1.45 5.87 -104.97 -0.62 -2.06 16 7 C 0.51 5.94 7.89 34.49 0.27 6.22 16 8 O -0.50 -6.67 16.13 -19.27 -0.31 -6.98 16 9 O -0.32 -4.15 9.00 -47.30 -0.43 -4.57 16 10 C 0.05 0.64 5.95 36.01 0.21 0.86 16 11 C 0.50 8.67 7.91 -10.98 -0.09 8.58 16 12 O -0.54 -11.25 16.50 -14.11 -0.23 -11.48 16 13 N -0.70 -12.87 5.55 -61.47 -0.34 -13.21 16 14 C 0.22 5.13 4.50 -5.20 -0.02 5.11 16 15 C -0.55 -14.35 9.83 -34.44 -0.34 -14.69 16 16 H 0.08 2.21 7.84 -52.49 -0.41 1.79 16 17 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 18 N -0.89 -25.60 13.96 55.43 0.77 -24.83 16 19 Si 0.88 20.53 27.47 -169.99 -4.67 15.86 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 23 C 0.05 0.42 9.09 -39.20 -0.36 0.07 16 24 C -0.09 -0.93 6.86 -79.86 -0.55 -1.47 16 25 N 0.04 0.45 4.45 34.00 0.15 0.60 16 26 O -0.17 -2.19 18.44 -29.46 -0.54 -2.73 16 27 O -0.13 -1.70 17.23 -36.51 -0.63 -2.33 16 28 H 0.12 0.14 8.14 -51.93 -0.42 -0.29 16 29 H 0.07 0.09 7.65 -51.93 -0.40 -0.31 16 30 H 0.07 0.09 7.65 -51.93 -0.40 -0.31 16 31 H 0.16 0.38 6.28 -52.49 -0.33 0.05 16 32 H 0.17 1.06 7.60 -52.49 -0.40 0.66 16 33 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.40 6.34 8.32 -40.82 -0.34 6.00 16 36 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 37 H 0.02 0.56 7.57 -51.92 -0.39 0.17 16 38 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.18 1.61 7.19 -52.48 -0.38 1.24 16 LS Contribution 356.46 15.07 5.37 5.37 Total: -1.00 -34.61 356.46 -6.64 -41.25 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -3.85 Total: -0.02 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -1.58 Total: 5.42 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.58 Total: -37.44 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -2.49 Total: -30.44 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.67 Total: 15.86 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.61 -6.64 -41.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011341892.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.837 kcal (2) G-P(sol) polarization free energy of solvation -34.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds