Wall clock time and date at job start Tue Mar 31 2020 20:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35699 * 116.99648 * 2 1 4 4 C 1.39031 * 119.90835 * 0.02562 * 3 2 1 5 5 C 1.37659 * 120.09315 * 179.97438 * 4 3 2 6 6 C 1.39816 * 119.90567 * 0.02562 * 5 4 3 7 7 C 1.47469 * 120.09262 * 179.97438 * 6 5 4 8 8 O 1.21503 * 119.99821 * 179.97438 * 7 6 5 9 9 O 1.34748 * 120.00180 * 359.97438 * 7 6 5 10 10 C 1.45194 * 117.00179 * 180.02562 * 9 7 6 11 11 C 1.50704 * 109.47256 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99537 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00090 * 179.97438 * 11 10 9 14 14 C 1.46492 * 119.99950 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47030 * 180.02562 * 14 13 11 16 16 H 1.08001 * 120.00277 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99941 * 180.02562 * 15 14 13 18 18 N 1.31508 * 119.99851 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99926 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47267 * 90.00312 * 19 17 15 21 21 H 1.48503 * 109.47104 * 210.00399 * 19 17 15 22 22 H 1.48505 * 109.47187 * 330.00287 * 19 17 15 23 23 C 1.39773 * 119.81400 * 359.97438 * 6 5 4 24 24 C 1.37701 * 119.90468 * 359.72700 * 23 6 5 25 25 N 1.48019 * 119.95193 * 180.27213 * 24 23 6 26 26 O 1.21796 * 120.00195 * 0.27470 * 25 24 23 27 27 O 1.21799 * 119.99901 * 180.27740 * 25 24 23 28 28 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47054 * 299.99671 * 1 2 3 30 30 H 1.09000 * 109.47187 * 59.99726 * 1 2 3 31 31 H 1.07993 * 119.95536 * 0.02562 * 4 3 2 32 32 H 1.07997 * 120.04943 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.47233 * 300.00068 * 10 9 7 34 34 H 1.08999 * 109.47266 * 59.99781 * 10 9 7 35 35 H 0.97002 * 120.00032 * 0.02562 * 13 11 10 36 36 H 1.08999 * 109.47770 * 300.00291 * 14 13 11 37 37 H 1.09007 * 109.46869 * 60.00501 * 14 13 11 38 38 H 0.96999 * 119.99922 * 179.97438 * 18 17 15 39 39 H 1.08003 * 120.04486 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2859 2.3739 0.0005 5 6 1.9068 3.6025 0.0011 6 6 3.3029 3.6779 0.0005 7 6 3.9724 4.9919 0.0005 8 8 5.1858 5.0555 0.0005 9 8 3.2385 6.1220 0.0005 10 6 3.9645 7.3795 0.0000 11 6 2.9851 8.5249 0.0007 12 8 1.7927 8.3032 0.0011 13 7 3.4344 9.7956 0.0008 14 6 2.4824 10.9090 0.0010 15 6 3.2359 12.2141 0.0005 16 1 4.3159 12.2142 -0.0003 17 6 2.5464 13.4083 0.0011 18 7 3.2040 14.5471 0.0001 19 14 0.6784 13.4082 0.0017 20 1 0.1839 13.4079 1.4019 21 1 0.1832 14.6208 -0.6979 22 1 0.1832 12.1958 -0.6985 23 6 4.0623 2.5045 0.0000 24 6 3.4332 1.2796 0.0057 25 7 4.2363 0.0363 0.0112 26 8 5.4528 0.0971 0.0158 27 8 3.6807 -1.0476 0.0111 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 0.2076 2.3147 0.0014 32 1 1.3164 4.5068 0.0019 33 1 4.5915 7.4374 0.8897 34 1 4.5908 7.4370 -0.8902 35 1 4.3881 9.9729 0.0001 36 1 1.8556 10.8515 -0.8890 37 1 1.8558 10.8512 0.8911 38 1 2.7190 15.3872 0.0001 39 1 5.1410 2.5584 0.0000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000011341892.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:06 Heat of formation + Delta-G solvation = -147.507100 kcal Electronic energy + Delta-G solvation = -27620.495561 eV Core-core repulsion = 23110.949109 eV Total energy + Delta-G solvation = -4509.546452 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.37006 -42.04235 -41.30864 -40.43596 -38.91188 -37.62815 -37.60942 -36.19440 -34.45819 -33.56540 -32.29453 -31.07519 -29.09326 -28.56470 -27.61077 -25.35211 -24.06003 -23.76210 -22.38141 -21.72849 -20.78562 -19.83218 -19.44695 -19.22063 -18.71631 -18.68180 -18.23387 -17.91455 -17.37206 -17.22244 -17.01113 -16.83508 -16.28897 -15.97913 -15.91260 -15.19262 -14.97379 -14.78608 -14.48281 -14.27319 -14.12174 -13.91236 -13.71657 -13.30685 -13.07608 -12.76860 -12.72032 -12.70063 -12.39030 -12.28496 -12.16515 -11.99812 -11.99329 -11.92409 -11.66313 -10.99136 -10.97805 -10.91799 -10.03766 -10.02000 -8.39232 -6.47149 -1.32339 -0.79933 0.09712 0.19965 1.04001 1.07432 1.34936 1.37763 1.48550 1.51977 1.69269 2.09784 2.28787 2.39268 2.96282 3.08206 3.23030 3.32917 3.48662 3.52997 3.63548 3.98856 4.04487 4.10843 4.23100 4.31057 4.34962 4.54761 4.69880 4.75383 4.77928 4.89862 5.01956 5.03003 5.14593 5.24595 5.40208 5.77083 6.05495 6.36358 6.44837 6.53471 6.71744 7.11588 7.26950 8.75299 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.024672 B = 0.001924 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.594742 B =14550.939181 C =15659.772106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.294 6.294 3 C 0.233 3.767 4 C -0.204 4.204 5 C 0.043 3.957 6 C -0.168 4.168 7 C 0.520 3.480 8 O -0.520 6.520 9 O -0.332 6.332 10 C 0.058 3.942 11 C 0.507 3.493 12 O -0.574 6.574 13 N -0.698 5.698 14 C 0.233 3.767 15 C -0.549 4.549 16 H 0.060 0.940 17 C 0.024 3.976 18 N -0.932 5.932 19 Si 0.939 3.061 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.255 1.255 23 C 0.046 3.954 24 C -0.112 4.112 25 N 0.039 4.961 26 O -0.203 6.203 27 O -0.146 6.146 28 H 0.128 0.872 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.203 0.797 32 H 0.180 0.820 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.413 0.587 36 H 0.019 0.981 37 H 0.018 0.982 38 H 0.272 0.728 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.105 -29.218 -0.012 30.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.204 6.204 3 C 0.181 3.819 4 C -0.222 4.222 5 C 0.025 3.975 6 C -0.170 4.170 7 C 0.366 3.634 8 O -0.410 6.410 9 O -0.247 6.247 10 C -0.018 4.018 11 C 0.293 3.707 12 O -0.454 6.454 13 N -0.349 5.349 14 C 0.110 3.890 15 C -0.587 4.587 16 H 0.078 0.922 17 C -0.176 4.176 18 N -0.570 5.570 19 Si 0.763 3.237 20 H -0.190 1.190 21 H -0.202 1.202 22 H -0.179 1.179 23 C 0.027 3.973 24 C -0.197 4.197 25 N 0.553 4.447 26 O -0.408 6.408 27 O -0.366 6.366 28 H 0.146 0.854 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.220 0.780 32 H 0.197 0.803 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.249 0.751 36 H 0.037 0.963 37 H 0.036 0.964 38 H 0.081 0.919 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.863 -28.713 -0.015 29.770 hybrid contribution 0.365 0.516 0.011 0.632 sum -7.498 -28.197 -0.004 29.177 Atomic orbital electron populations 1.23856 0.73741 1.07388 1.04233 1.86396 1.25718 1.24171 1.84079 1.19166 0.88682 0.87842 0.86167 1.21725 1.03257 0.88622 1.08608 1.22039 0.92179 1.00261 0.83024 1.18647 0.94485 0.88627 1.15288 1.20874 0.85247 0.84795 0.72499 1.90897 1.15374 1.88014 1.46751 1.86521 1.40263 1.14064 1.83883 1.22810 0.92774 0.78665 1.07569 1.20469 0.89274 0.84278 0.76712 1.90672 1.18228 1.85163 1.51343 1.45869 1.11762 1.04590 1.72694 1.19168 0.89507 0.84076 0.96281 1.21297 0.94763 0.89864 1.52787 0.92188 1.25642 1.03556 0.94859 0.93590 1.69985 1.38146 0.98333 1.50564 0.85830 0.79838 0.78594 0.79471 1.18969 1.20180 1.17918 1.20812 1.02701 0.87689 0.86129 1.20335 0.89007 0.84781 1.25625 1.43488 1.01156 1.02762 0.97259 1.94562 0.96107 1.94162 1.55983 1.94557 1.73907 1.15729 1.52443 0.85409 0.89485 0.89474 0.78047 0.80273 0.85607 0.85610 0.75110 0.96299 0.96401 0.91872 0.81558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.81 113.37 1.11 1.11 16 2 O -0.29 -3.60 8.48 -68.99 -0.59 -4.18 16 3 C 0.23 3.07 6.68 22.64 0.15 3.22 16 4 C -0.20 -1.48 9.01 22.32 0.20 -1.28 16 5 C 0.04 0.47 9.61 22.51 0.22 0.69 16 6 C -0.17 -2.81 5.87 -20.09 -0.12 -2.93 16 7 C 0.52 11.25 7.89 70.25 0.55 11.80 16 8 O -0.52 -13.46 16.13 19.83 0.32 -13.14 16 9 O -0.33 -7.78 9.00 -50.20 -0.45 -8.24 16 10 C 0.06 1.35 5.95 71.24 0.42 1.78 16 11 C 0.51 16.62 7.91 87.66 0.69 17.31 16 12 O -0.57 -23.10 16.50 15.76 0.26 -22.84 16 13 N -0.70 -24.93 5.55 -466.79 -2.59 -27.52 16 14 C 0.23 10.55 4.50 85.63 0.38 10.94 16 15 C -0.55 -28.82 9.83 25.60 0.25 -28.57 16 16 H 0.06 3.32 7.84 -2.91 -0.02 3.30 16 17 C 0.02 1.30 5.47 84.66 0.46 1.76 16 18 N -0.93 -54.16 13.96 21.45 0.30 -53.86 16 19 Si 0.94 41.89 27.47 68.60 1.88 43.78 16 20 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 22 H -0.26 -11.06 6.54 99.48 0.65 -10.41 16 23 C 0.05 0.83 9.09 22.51 0.20 1.04 16 24 C -0.11 -2.12 6.86 36.43 0.25 -1.87 16 25 N 0.04 0.96 4.45 -46.33 -0.21 0.75 16 26 O -0.20 -5.50 18.44 18.89 0.35 -5.15 16 27 O -0.15 -3.71 17.23 25.62 0.44 -3.26 16 28 H 0.13 -0.09 8.14 -2.39 -0.02 -0.11 16 29 H 0.09 -0.15 7.65 -2.38 -0.02 -0.17 16 30 H 0.09 -0.15 7.65 -2.39 -0.02 -0.17 16 31 H 0.20 -0.15 6.28 -2.91 -0.02 -0.17 16 32 H 0.18 1.63 7.60 -2.91 -0.02 1.61 16 33 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.41 12.61 8.32 -92.71 -0.77 11.84 16 36 H 0.02 0.90 7.20 -2.39 -0.02 0.89 16 37 H 0.02 0.84 7.57 -2.38 -0.02 0.82 16 38 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 39 H 0.17 3.22 7.19 -2.91 -0.02 3.20 16 Total: -1.00 -76.07 356.46 4.82 -71.25 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 0.31 Total: 7.40 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 4.79 Total: 15.01 kcal Atomic # 7 Polarization: -78.13 SS G_CDS: -2.50 Total: -80.63 kcal Atomic # 8 Polarization: -57.14 SS G_CDS: 0.33 Total: -56.81 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.88 Total: 43.78 kcal Total: -76.07 4.82 -71.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011341892.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.254 kcal (2) G-P(sol) polarization free energy of solvation -76.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds