Wall clock time and date at job start Tue Mar 31 2020 20:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35646 * 116.99829 * 2 1 4 4 C 1.38707 * 120.15274 * 0.02562 * 3 2 1 5 5 C 1.38058 * 120.08462 * 179.97438 * 4 3 2 6 6 C 1.38560 * 120.40278 * 0.02812 * 5 4 3 7 7 N 1.48026 * 119.84140 * 179.97438 * 6 5 4 8 8 O 1.21800 * 120.00061 * 359.97438 * 7 6 5 9 9 O 1.21800 * 119.99436 * 179.97438 * 7 6 5 10 10 C 1.37765 * 120.31256 * 359.73792 * 6 5 4 11 11 C 1.39764 * 119.89824 * 0.48906 * 10 6 5 12 12 C 1.47406 * 120.19600 * 179.79042 * 11 10 6 13 13 O 1.21503 * 119.99767 * 179.45257 * 12 11 10 14 14 O 1.34749 * 119.99669 * 359.72256 * 12 11 10 15 15 C 1.45208 * 116.99513 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.46885 * 180.02562 * 15 14 12 17 17 O 1.21285 * 119.99743 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99767 * 180.02562 * 16 15 14 19 19 C 1.46500 * 119.99716 * 179.97438 * 18 16 15 20 20 C 1.50700 * 109.47288 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99475 * 0.02562 * 20 19 18 22 22 C 1.37878 * 120.00266 * 180.02562 * 20 19 18 23 23 N 1.31508 * 119.99688 * 179.97438 * 22 20 19 24 24 Si 1.86793 * 119.99913 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47475 * 89.99766 * 24 22 20 26 26 H 1.48499 * 109.47243 * 209.99867 * 24 22 20 27 27 H 1.48504 * 109.47132 * 329.99537 * 24 22 20 28 28 H 1.09002 * 109.46918 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47254 * 300.00010 * 1 2 3 30 30 H 1.08997 * 109.47520 * 59.99908 * 1 2 3 31 31 H 1.07992 * 119.95839 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.79647 * 180.02562 * 5 4 3 33 33 H 1.08003 * 120.04967 * 180.28350 * 10 6 5 34 34 H 1.09003 * 109.46907 * 299.99907 * 15 14 12 35 35 H 1.08995 * 109.46854 * 60.00352 * 15 14 12 36 36 H 0.96992 * 120.00178 * 359.97438 * 18 16 15 37 37 H 1.09003 * 109.47554 * 300.00496 * 19 18 16 38 38 H 1.09003 * 109.47300 * 59.99788 * 19 18 16 39 39 H 0.97010 * 119.99871 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2924 2.3739 0.0005 5 6 1.9206 3.6033 0.0011 6 6 3.3038 3.6839 0.0005 7 7 3.9644 5.0086 0.0005 8 8 3.2923 6.0243 0.0005 9 8 5.1802 5.0827 0.0005 10 6 4.0672 2.5371 0.0048 11 6 3.4446 1.2858 -0.0005 12 6 4.2550 0.0545 -0.0006 13 8 3.7101 -1.0314 0.0048 14 8 5.6002 0.1334 -0.0012 15 6 6.3339 -1.1197 -0.0018 16 6 7.8139 -0.8352 -0.0017 17 8 8.2110 0.3108 -0.0017 18 7 8.6959 -1.8542 -0.0028 19 6 10.1346 -1.5776 -0.0033 20 6 10.8962 -2.8780 -0.0038 21 1 10.3619 -3.8166 -0.0042 22 6 12.2749 -2.8695 -0.0038 23 7 12.9394 -4.0044 -0.0038 24 14 13.1989 -1.2461 -0.0024 25 1 13.4437 -0.8170 1.3980 26 1 14.4975 -1.4150 -0.7026 27 1 12.3900 -0.2156 -0.7017 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.2138 2.3195 0.0005 32 1 1.3302 4.5076 0.0019 33 1 5.1451 2.6049 0.0090 34 1 6.0745 -1.6931 0.8882 35 1 6.0738 -1.6926 -0.8918 36 1 8.3783 -2.7706 -0.0032 37 1 10.3940 -1.0038 -0.8930 38 1 10.3948 -1.0049 0.8869 39 1 13.9095 -3.9984 -0.0034 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019285038.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:08 Heat of formation + Delta-G solvation = -122.642530 kcal Electronic energy + Delta-G solvation = -27979.761808 eV Core-core repulsion = 23471.293565 eV Total energy + Delta-G solvation = -4508.468243 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.47941 -41.41810 -40.27212 -38.87294 -38.29829 -36.79283 -36.50458 -34.40611 -32.72951 -32.43806 -31.83825 -29.60303 -28.46883 -27.27030 -26.34822 -25.05568 -22.92785 -22.21686 -21.56899 -20.18010 -19.64188 -18.99329 -18.97167 -17.83854 -17.78060 -17.66074 -16.96699 -16.87034 -16.52194 -16.46805 -15.82168 -15.35097 -15.07001 -14.84455 -14.68443 -14.19217 -14.11419 -13.75091 -13.24978 -13.11396 -12.94365 -12.66914 -12.38908 -12.18051 -12.12635 -12.10284 -11.78293 -11.50263 -11.34953 -11.08286 -10.91635 -10.87746 -10.77837 -10.21347 -10.00385 -9.55852 -9.50998 -9.39354 -8.82863 -8.29701 -6.25087 -4.28370 -0.57154 -0.14263 0.85737 1.04621 1.93878 2.04535 2.25018 2.77514 2.98539 3.25806 3.32703 3.40901 3.54347 3.69117 3.82631 3.91394 4.14513 4.30730 4.36270 4.43489 4.51899 4.67368 4.79193 4.84416 4.97221 5.02573 5.07572 5.09205 5.11344 5.16604 5.40845 6.02327 6.05395 6.31112 6.71542 6.99623 7.05880 7.30151 7.37199 7.39259 8.02103 8.38888 8.65116 8.77333 9.33946 10.86598 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014064 B = 0.002425 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.459943 B =11544.241683 C =13508.951027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.268 6.268 3 C 0.239 3.761 4 C -0.221 4.221 5 C 0.018 3.982 6 C -0.098 4.098 7 N 0.033 4.967 8 O -0.165 6.165 9 O -0.148 6.148 10 C 0.046 3.954 11 C -0.157 4.157 12 C 0.512 3.488 13 O -0.480 6.480 14 O -0.326 6.326 15 C 0.052 3.948 16 C 0.501 3.499 17 O -0.534 6.534 18 N -0.698 5.698 19 C 0.222 3.778 20 C -0.547 4.547 21 H 0.081 0.919 22 C 0.079 3.921 23 N -0.891 5.891 24 Si 0.877 3.123 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.260 1.260 28 H 0.113 0.887 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.162 0.838 32 H 0.163 0.837 33 H 0.181 0.819 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.399 0.601 37 H 0.029 0.971 38 H 0.024 0.976 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.404 10.852 -0.017 32.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.177 6.177 3 C 0.188 3.812 4 C -0.241 4.241 5 C -0.001 4.001 6 C -0.182 4.182 7 N 0.553 4.447 8 O -0.379 6.379 9 O -0.366 6.366 10 C 0.027 3.973 11 C -0.160 4.160 12 C 0.355 3.645 13 O -0.368 6.368 14 O -0.241 6.241 15 C -0.025 4.025 16 C 0.284 3.716 17 O -0.411 6.411 18 N -0.349 5.349 19 C 0.100 3.900 20 C -0.584 4.584 21 H 0.099 0.901 22 C -0.126 4.126 23 N -0.528 5.528 24 Si 0.703 3.297 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.184 1.184 28 H 0.132 0.868 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.180 0.820 32 H 0.181 0.819 33 H 0.198 0.802 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.233 0.767 37 H 0.047 0.953 38 H 0.042 0.958 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -30.292 10.380 -0.017 32.021 hybrid contribution 0.342 0.523 0.024 0.625 sum -29.951 10.903 0.008 31.873 Atomic orbital electron populations 1.23423 0.76925 1.05680 1.02080 1.86432 1.22371 1.24473 1.84409 1.19330 0.90540 0.85791 0.85492 1.21216 1.01567 0.90062 1.11210 1.21029 0.91531 0.99806 0.87758 1.20847 0.93275 0.83508 1.20541 1.43413 1.01245 1.02442 0.97616 1.94526 1.64739 1.24739 1.53914 1.94636 0.95322 1.93636 1.52972 1.21344 1.03174 0.88129 0.84668 1.18265 0.89667 0.91707 1.16322 1.20386 0.81485 0.88469 0.74178 1.90920 1.72765 1.28589 1.44481 1.86571 1.18134 1.35655 1.83764 1.22889 0.90505 0.83967 1.05140 1.19883 0.86683 0.86418 0.78613 1.90722 1.79998 1.20821 1.49557 1.46058 1.08141 1.08234 1.72455 1.19568 0.75237 0.97994 0.97152 1.21055 0.91792 0.91853 1.53739 0.90142 1.24787 0.97299 0.96724 0.93755 1.69876 1.08002 1.25764 1.49118 0.86818 0.79643 0.84112 0.79150 1.19763 1.20840 1.18390 0.86845 0.91578 0.91584 0.82040 0.81914 0.80188 0.88004 0.88000 0.76694 0.95349 0.95811 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.81 101.05 0.99 1.03 16 2 O -0.27 -2.14 8.57 -40.52 -0.35 -2.49 16 3 C 0.24 1.87 6.70 -38.67 -0.26 1.61 16 4 C -0.22 -1.06 9.03 -39.47 -0.36 -1.42 16 5 C 0.02 0.11 9.54 -39.53 -0.38 -0.27 16 6 C -0.10 -0.91 6.84 -80.00 -0.55 -1.46 16 7 N 0.03 0.40 4.45 33.94 0.15 0.55 16 8 O -0.17 -1.96 18.43 -29.46 -0.54 -2.51 16 9 O -0.15 -2.06 18.43 -29.46 -0.54 -2.60 16 10 C 0.05 0.46 9.11 -39.18 -0.36 0.11 16 11 C -0.16 -1.60 5.89 -104.86 -0.62 -2.22 16 12 C 0.51 6.54 7.89 34.46 0.27 6.82 16 13 O -0.48 -6.79 14.95 -26.59 -0.40 -7.18 16 14 O -0.33 -4.69 9.01 -47.31 -0.43 -5.11 16 15 C 0.05 0.72 5.95 36.01 0.21 0.94 16 16 C 0.50 9.23 7.91 -10.98 -0.09 9.14 16 17 O -0.53 -11.98 16.50 -14.11 -0.23 -12.21 16 18 N -0.70 -13.50 5.55 -61.47 -0.34 -13.84 16 19 C 0.22 5.31 4.50 -5.19 -0.02 5.29 16 20 C -0.55 -14.66 9.83 -34.44 -0.34 -15.00 16 21 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 22 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 23 N -0.89 -26.12 13.96 55.43 0.77 -25.35 16 24 Si 0.88 21.18 27.47 -169.99 -4.67 16.51 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 28 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.08 7.66 -51.93 -0.40 -0.32 16 30 H 0.07 0.08 7.66 -51.93 -0.40 -0.32 16 31 H 0.16 0.20 6.30 -52.49 -0.33 -0.13 16 32 H 0.16 0.62 7.59 -52.49 -0.40 0.22 16 33 H 0.18 2.00 7.15 -52.48 -0.38 1.62 16 34 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.40 6.60 8.32 -40.82 -0.34 6.26 16 37 H 0.03 0.72 7.20 -51.93 -0.37 0.34 16 38 H 0.02 0.59 7.57 -51.93 -0.39 0.20 16 39 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 356.56 15.07 5.37 5.37 Total: -1.00 -35.75 356.56 -6.64 -42.39 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -3.85 Total: -0.18 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -1.58 Total: 6.65 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.58 Total: -38.64 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -2.49 Total: -32.10 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.75 -6.64 -42.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019285038.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.252 kcal (2) G-P(sol) polarization free energy of solvation -35.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds