Wall clock time and date at job start Tue Mar 31 2020 20:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35646 * 116.99829 * 2 1 4 4 C 1.38707 * 120.15274 * 0.02562 * 3 2 1 5 5 C 1.38058 * 120.08462 * 179.97438 * 4 3 2 6 6 C 1.38560 * 120.40278 * 0.02812 * 5 4 3 7 7 N 1.48026 * 119.84140 * 179.97438 * 6 5 4 8 8 O 1.21800 * 120.00061 * 359.97438 * 7 6 5 9 9 O 1.21800 * 119.99436 * 179.97438 * 7 6 5 10 10 C 1.37765 * 120.31256 * 359.73792 * 6 5 4 11 11 C 1.39764 * 119.89824 * 0.48906 * 10 6 5 12 12 C 1.47406 * 120.19600 * 179.79042 * 11 10 6 13 13 O 1.21503 * 119.99767 * 179.45257 * 12 11 10 14 14 O 1.34749 * 119.99669 * 359.72256 * 12 11 10 15 15 C 1.45208 * 116.99513 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.46885 * 180.02562 * 15 14 12 17 17 O 1.21285 * 119.99743 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99767 * 180.02562 * 16 15 14 19 19 C 1.46500 * 119.99716 * 179.97438 * 18 16 15 20 20 C 1.50700 * 109.47288 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99475 * 0.02562 * 20 19 18 22 22 C 1.37878 * 120.00266 * 180.02562 * 20 19 18 23 23 N 1.31508 * 119.99688 * 179.97438 * 22 20 19 24 24 Si 1.86793 * 119.99913 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47475 * 89.99766 * 24 22 20 26 26 H 1.48499 * 109.47243 * 209.99867 * 24 22 20 27 27 H 1.48504 * 109.47132 * 329.99537 * 24 22 20 28 28 H 1.09002 * 109.46918 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47254 * 300.00010 * 1 2 3 30 30 H 1.08997 * 109.47520 * 59.99908 * 1 2 3 31 31 H 1.07992 * 119.95839 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.79647 * 180.02562 * 5 4 3 33 33 H 1.08003 * 120.04967 * 180.28350 * 10 6 5 34 34 H 1.09003 * 109.46907 * 299.99907 * 15 14 12 35 35 H 1.08995 * 109.46854 * 60.00352 * 15 14 12 36 36 H 0.96992 * 120.00178 * 359.97438 * 18 16 15 37 37 H 1.09003 * 109.47554 * 300.00496 * 19 18 16 38 38 H 1.09003 * 109.47300 * 59.99788 * 19 18 16 39 39 H 0.97010 * 119.99871 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2924 2.3739 0.0005 5 6 1.9206 3.6033 0.0011 6 6 3.3038 3.6839 0.0005 7 7 3.9644 5.0086 0.0005 8 8 3.2923 6.0243 0.0005 9 8 5.1802 5.0827 0.0005 10 6 4.0672 2.5371 0.0048 11 6 3.4446 1.2858 -0.0005 12 6 4.2550 0.0545 -0.0006 13 8 3.7101 -1.0314 0.0048 14 8 5.6002 0.1334 -0.0012 15 6 6.3339 -1.1197 -0.0018 16 6 7.8139 -0.8352 -0.0017 17 8 8.2110 0.3108 -0.0017 18 7 8.6959 -1.8542 -0.0028 19 6 10.1346 -1.5776 -0.0033 20 6 10.8962 -2.8780 -0.0038 21 1 10.3619 -3.8166 -0.0042 22 6 12.2749 -2.8695 -0.0038 23 7 12.9394 -4.0044 -0.0038 24 14 13.1989 -1.2461 -0.0024 25 1 13.4437 -0.8170 1.3980 26 1 14.4975 -1.4150 -0.7026 27 1 12.3900 -0.2156 -0.7017 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.2138 2.3195 0.0005 32 1 1.3302 4.5076 0.0019 33 1 5.1451 2.6049 0.0090 34 1 6.0745 -1.6931 0.8882 35 1 6.0738 -1.6926 -0.8918 36 1 8.3783 -2.7706 -0.0032 37 1 10.3940 -1.0038 -0.8930 38 1 10.3948 -1.0049 0.8869 39 1 13.9095 -3.9984 -0.0034 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019285038.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:07 Heat of formation + Delta-G solvation = -146.695451 kcal Electronic energy + Delta-G solvation = -27980.804821 eV Core-core repulsion = 23471.293565 eV Total energy + Delta-G solvation = -4509.511256 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.31633 -42.19819 -41.20797 -40.31723 -38.89920 -37.69857 -37.59742 -36.22379 -34.47962 -33.38782 -32.45769 -31.12710 -29.05932 -28.68560 -27.04111 -25.89507 -24.17114 -23.42815 -22.53192 -21.75704 -20.51962 -19.84142 -19.52536 -19.29083 -18.78386 -18.64156 -18.14726 -17.96030 -17.42257 -17.15548 -17.01310 -16.80200 -16.23805 -16.08240 -15.73083 -15.19818 -14.87066 -14.75177 -14.59158 -14.37515 -14.14237 -13.87464 -13.71649 -13.44401 -13.09836 -12.75621 -12.72233 -12.58228 -12.45140 -12.35584 -12.31835 -11.99077 -11.94469 -11.83951 -11.67648 -11.00641 -10.93266 -10.80834 -10.08518 -10.05944 -8.41068 -6.48413 -1.31525 -0.82640 0.11542 0.28002 1.03100 1.11613 1.32916 1.36168 1.47151 1.49542 1.81051 2.07449 2.27286 2.36358 2.94479 3.03920 3.20414 3.29744 3.50566 3.61169 3.78264 4.00194 4.01450 4.02408 4.23639 4.26882 4.37465 4.45085 4.56074 4.73816 4.78396 4.84402 4.99275 5.02970 5.20039 5.22677 5.38093 5.89263 6.04438 6.39462 6.42406 6.51492 6.69598 7.10346 7.25851 8.73407 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014064 B = 0.002425 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.459943 B =11544.241683 C =13508.951027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.293 6.293 3 C 0.246 3.754 4 C -0.194 4.194 5 C 0.034 3.966 6 C -0.110 4.110 7 N 0.036 4.964 8 O -0.137 6.137 9 O -0.223 6.223 10 C 0.040 3.960 11 C -0.179 4.179 12 C 0.513 3.487 13 O -0.497 6.497 14 O -0.345 6.345 15 C 0.061 3.939 16 C 0.503 3.497 17 O -0.577 6.577 18 N -0.696 5.696 19 C 0.232 3.768 20 C -0.547 4.547 21 H 0.063 0.937 22 C 0.028 3.972 23 N -0.930 5.930 24 Si 0.935 3.065 25 H -0.265 1.265 26 H -0.274 1.274 27 H -0.260 1.260 28 H 0.119 0.881 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.211 0.789 32 H 0.195 0.805 33 H 0.157 0.843 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.414 0.586 37 H 0.017 0.983 38 H 0.016 0.984 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.373 11.740 0.015 36.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.202 6.202 3 C 0.195 3.805 4 C -0.213 4.213 5 C 0.015 3.985 6 C -0.194 4.194 7 N 0.550 4.450 8 O -0.363 6.363 9 O -0.423 6.423 10 C 0.021 3.979 11 C -0.182 4.182 12 C 0.358 3.642 13 O -0.385 6.385 14 O -0.261 6.261 15 C -0.015 4.015 16 C 0.289 3.711 17 O -0.457 6.457 18 N -0.347 5.347 19 C 0.109 3.891 20 C -0.585 4.585 21 H 0.081 0.919 22 C -0.173 4.173 23 N -0.568 5.568 24 Si 0.759 3.241 25 H -0.190 1.190 26 H -0.199 1.199 27 H -0.184 1.184 28 H 0.137 0.863 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.227 0.773 32 H 0.213 0.787 33 H 0.174 0.826 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.250 0.750 37 H 0.035 0.965 38 H 0.034 0.966 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -34.160 11.198 0.017 35.949 hybrid contribution 1.264 0.174 0.013 1.276 sum -32.896 11.372 0.030 34.806 Atomic orbital electron populations 1.23836 0.74150 1.07039 1.04374 1.86409 1.25288 1.24756 1.83764 1.19462 0.89626 0.87053 0.84354 1.21670 1.03402 0.87944 1.08269 1.21458 0.89747 1.01647 0.85605 1.20955 0.94491 0.81504 1.22485 1.43749 1.00995 1.03358 0.96848 1.94467 1.64307 1.25816 1.51665 1.94656 0.96494 1.94183 1.57009 1.21091 1.02339 0.88898 0.85589 1.18180 0.90834 0.90257 1.18896 1.20785 0.80698 0.89326 0.73382 1.90897 1.72693 1.29288 1.45663 1.86573 1.19432 1.35919 1.84173 1.22788 0.86945 0.84262 1.07551 1.20569 0.88517 0.85245 0.76755 1.90704 1.81147 1.22572 1.51276 1.45834 1.06668 1.09498 1.72711 1.19178 0.77692 0.96129 0.96147 1.21261 0.92117 0.92344 1.52783 0.91914 1.25570 0.98382 0.99755 0.93582 1.69974 1.08562 1.27745 1.50551 0.85890 0.78595 0.80142 0.79487 1.18999 1.19864 1.18394 0.86270 0.89192 0.89198 0.77251 0.78749 0.82575 0.85482 0.85482 0.74997 0.96519 0.96636 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.81 113.37 1.11 1.11 16 2 O -0.29 -3.81 8.57 -68.68 -0.59 -4.40 16 3 C 0.25 3.15 6.70 22.86 0.15 3.31 16 4 C -0.19 -0.92 9.03 22.34 0.20 -0.72 16 5 C 0.03 0.28 9.54 22.30 0.21 0.49 16 6 C -0.11 -1.95 6.84 36.34 0.25 -1.70 16 7 N 0.04 0.87 4.45 -46.54 -0.21 0.66 16 8 O -0.14 -3.06 18.43 18.89 0.35 -2.71 16 9 O -0.22 -6.75 18.43 18.89 0.35 -6.40 16 10 C 0.04 0.84 9.11 22.53 0.21 1.04 16 11 C -0.18 -3.54 5.89 -20.02 -0.12 -3.66 16 12 C 0.51 13.03 7.89 70.24 0.55 13.59 16 13 O -0.50 -13.59 14.95 26.83 0.40 -13.18 16 14 O -0.35 -10.08 9.01 -50.21 -0.45 -10.53 16 15 C 0.06 1.65 5.95 71.24 0.42 2.07 16 16 C 0.50 18.66 7.91 87.66 0.69 19.35 16 17 O -0.58 -26.61 16.50 15.75 0.26 -26.35 16 18 N -0.70 -26.95 5.55 -466.78 -2.59 -29.54 16 19 C 0.23 11.21 4.50 85.63 0.38 11.60 16 20 C -0.55 -29.78 9.83 25.60 0.25 -29.53 16 21 H 0.06 3.56 7.84 -2.91 -0.02 3.54 16 22 C 0.03 1.56 5.47 84.66 0.46 2.02 16 23 N -0.93 -55.22 13.96 21.45 0.30 -54.92 16 24 Si 0.94 44.01 27.47 68.60 1.88 45.89 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 26 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 27 H -0.26 -12.13 6.54 99.48 0.65 -11.48 16 28 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 29 H 0.09 -0.28 7.66 -2.39 -0.02 -0.29 16 30 H 0.09 -0.28 7.66 -2.39 -0.02 -0.29 16 31 H 0.21 -1.00 6.30 -2.91 -0.02 -1.02 16 32 H 0.20 0.40 7.59 -2.91 -0.02 0.38 16 33 H 0.16 3.94 7.15 -2.91 -0.02 3.91 16 34 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 36 H 0.41 13.55 8.32 -92.71 -0.77 12.77 16 37 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 38 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 39 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -81.32 356.56 4.80 -76.52 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 0.31 Total: 6.00 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: 4.79 Total: 18.97 kcal Atomic # 7 Polarization: -81.30 SS G_CDS: -2.50 Total: -83.80 kcal Atomic # 8 Polarization: -63.90 SS G_CDS: 0.32 Total: -63.58 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.89 kcal Total: -81.32 4.80 -76.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019285038.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.171 kcal (2) G-P(sol) polarization free energy of solvation -81.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds